RchiOBHm_Chr6g0255871

Polysaccharide biosynthesis

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0013606
Physical Location & Seq
Reverse (-)
11299436 .. 11300814
1379 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ22949

Sequence Viewer

Length: 894 bp
ATGGCTCCTCTTCTTCTTCACCTTCTTCACTCTCGCTTTCGCCCTCGCCCTCATCAACACCACCCTCCCCAACCCCACCTCTCTCTCCCCCACCTCCACTATCCCCTCCCGCCCTCCGTCGCGGACGCGCTTCTCCACTACGCCATTTCCTCCAACGCCTCATCGGCATCGTCCCACATGTCCCTCTCCGAAATCACAGCCATCTCCACGGCCCTGACTGCCTGCTCGCACAGGTGTAATTTCCTCGTCTTCGGCCTCACCCACGAGTCCCTCCTCTGGCACGCGCTCAATCTCAACGGCCGTACCGTCTTCCTCGACGACAATGAGTTCCTCATCTCCAAGTTCGAACAGTCACACCCCTACCACGGAATCGAAGCGTACGACGTGTCGTTCGCCACCACGGTCAAGGACTTCAAGTCCCTCCTCTCCTCCACCAAATCTCAAGTGCAAAACGACTGTCGTCCGGTGCAGAACTTGCTATTTTCCGACTGCAAGCTCGGGATCAACGACTTGCCGAATCACATATACCAAGTCCCTTGGGATGTGATTTTGGTCGACGGGCCAAGTGGGTATTCTCCGTCGTCGCCGGGTCGGATGGCGCCGATTTTCACCGCCGGAGTTTTGGCCCGGAGCAAGAAGGGCGGCAGGGACAAGACCCATGTTTTTGTTCACGATTTTTCTAGAGAGGTTGAGAAGATTAGTAGCGACGAGTTTCTTTGCCGGGAAAACCTGGTGCAGGCTGTGGATTTGTTGGGCCATTTTGTTGTGGAGAAAATGGAAGATAACAGATTTGAGTTTTGCAGAAACTCGACATCATCATCATCGTCATCATCATTACGATCTTGGTCTGAATCATCAGGGAATGAAGATGGTGATGATGATGAAGATGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Polysacc_synt_4

Protein Analysis

297

Amino Acids

33.15

Weight (kDa)

5.83

Isoelectric Point (pI)

54.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IRX15_IRX15L_GXM PF21729 64 - 254 2.4e-76 IRX15/IRX15L/GXM
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013606)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g05560
malus_domestica MD05G1091700.v1.1
prunus_persica Prupe.8G131100_v2.0.a1
pyrus_communis pycom05g08580 pycom14g01040
rosa_chinensis RchiOBHm_Chr6g0255871
rosa_laevigata RLG00000014807
rosa_multiflora Rmu_sc0001738.1_g000001 Rmu_sc0001738.1_g000002
rosa_roxburghii Rroxscaffold_7G00209580
rosa_rugosa Rorug05G0500200 Rorug05G0561900
rosa_samantha Rh6AG080200 Rh6CG005900 Rh6CG071000 Rh6DG006100 Rh6DG068300
rosa_wichuraiana Rw6G006920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 598
AccI GTMKAC 1 cut(s) 555
AccII CGCG 3 cut(s) 122, 128, 284
AciI CCGC 4 cut(s) 110, 122, 612, 642
AclWI GGATC 1 cut(s) 509
AcoI YGGCCR 1 cut(s) 298
AcyI GRCGYC 1 cut(s) 599
AfaI GTAC 2 cut(s) 304, 380
AfiI CCNNNNNNNGG 3 cut(s) 276, 365, 736
AflIII ACRYGT 2 cut(s) 177, 384
AgsI TTSAA 1 cut(s) 415
AhdI GACNNNNNGTC 1 cut(s) 415
AjiI CACGTC 1 cut(s) 385
AjnI CCWGG 1 cut(s) 729
AjuI GAANNNNNNNTTGG 2 cut(s) 556, 588
AluBI AGCT 1 cut(s) 496
AluI AGCT 1 cut(s) 496
AlwI GGATC 1 cut(s) 509
Ama87I CYCGRG 1 cut(s) 497
AoxI GGCC 6 cut(s) 210, 253, 298, 560, 624, 754
ArsI GACNNNNNNTTYG 4 cut(s) 374, 406, 442, 474
AspLEI GCGC 3 cut(s) 130, 286, 601
AspS9I GGNCC 4 cut(s) 211, 560, 625, 754
AsuC2I CCSGG 3 cut(s) 588, 628, 722
AsuHPI GGTGA 4 cut(s) 11, 250, 601, 884
AsuII TTCGAA 1 cut(s) 345
AvaI CYCGRG 1 cut(s) 497
BaeI ACNNNNGTAYC 2 cut(s) 286, 319
BanI GGYRCC 1 cut(s) 598
BauI CACGAG 1 cut(s) 263
BbsI GAAGAC 2 cut(s) 241, 301
BccI CCATC 3 cut(s) 209, 589, 863
BceAI ACGGC 3 cut(s) 225, 285, 313
BciT130I CCWGG 1 cut(s) 731
BcnI CCSGG 3 cut(s) 588, 628, 722
BfaI CTAG 1 cut(s) 681
BfoI RGCGCY 1 cut(s) 602
BglI GCCNNNNNGGC 1 cut(s) 164
BisI GCNGC 1 cut(s) 643
BlsI GCNGC 1 cut(s) 644
Bme1390I CCNGG 4 cut(s) 588, 628, 722, 731
BmeRI GACNNNNNGTC 1 cut(s) 415
BmeT110I CYCGRG 1 cut(s) 497
BmgBI CACGTC 1 cut(s) 385
BmgT120I GGNCC 4 cut(s) 211, 560, 625, 754
BmiI GGNNCC 2 cut(s) 6, 600
BmrFI CCNGG 4 cut(s) 588, 628, 722, 731
BmsI GCATC 1 cut(s) 176
BoxI GACNNNNGTC 1 cut(s) 459
BpiI GAAGAC 2 cut(s) 241, 301
Bpu14I TTCGAA 1 cut(s) 345
BpuEI CTTGAG 1 cut(s) 426
BpuMI CCSGG 3 cut(s) 588, 628, 722
BsaHI GRCGYC 1 cut(s) 599
BsaJI CCNNGG 4 cut(s) 207, 364, 399, 536
BsaWI WCCGGW 1 cut(s) 463
Bsc4I CCNNNNNNNGG 3 cut(s) 276, 365, 736
BseBI CCWGG 1 cut(s) 731
BseDI CCNNGG 4 cut(s) 207, 364, 399, 536
BseGI GGATG 2 cut(s) 547, 600
BseLI CCNNNNNNNGG 3 cut(s) 276, 365, 736
BseRI GAGGAG 3 cut(s) 263, 413, 418
BseX3I CGGCCG 1 cut(s) 298
BsgI GTGCAG 2 cut(s) 488, 755
Bsh1236I CGCG 3 cut(s) 122, 128, 284
Bsh1285I CGRYCG 1 cut(s) 301
BshFI GGCC 6 cut(s) 212, 255, 300, 562, 626, 756
BshNI GGYRCC 1 cut(s) 598
BsiEI CGRYCG 1 cut(s) 301
BsiHKCI CYCGRG 1 cut(s) 497
BsiSI CCGG 5 cut(s) 464, 587, 615, 628, 721
BsiWI CGTACG 1 cut(s) 378
BslFI GGGAC 6 cut(s) 157, 166, 253, 403, 518, 662
BslI CCNNNNNNNGG 3 cut(s) 276, 365, 736
BsmFI GGGAC 6 cut(s) 157, 166, 253, 403, 518, 662
BsnI GGCC 6 cut(s) 212, 255, 300, 562, 626, 756
BsoBI CYCGRG 1 cut(s) 497
Bsp119I TTCGAA 1 cut(s) 345
Bsp143I GATC 2 cut(s) 501, 839
BspACI CCGC 4 cut(s) 110, 122, 612, 642
BspANI GGCC 6 cut(s) 212, 255, 300, 562, 626, 756
BspFNI CGCG 3 cut(s) 122, 128, 284
BspLI GGNNCC 2 cut(s) 6, 600
BspPI GGATC 1 cut(s) 509
BspT104I TTCGAA 1 cut(s) 345
BspT107I GGYRCC 1 cut(s) 598
BssECI CCNNGG 4 cut(s) 207, 364, 399, 536
BssMI GATC 2 cut(s) 501, 839
BssNI GRCGYC 1 cut(s) 599
BssSI CACGAG 1 cut(s) 263
BssT1I CCWWGG 1 cut(s) 536
Bst2BI CACGAG 1 cut(s) 263
Bst2UI CCWGG 1 cut(s) 731
Bst4CI ACNGT 4 cut(s) 307, 351, 403, 458
Bst6I CTCTTC 1 cut(s) 15
BstACI GRCGYC 1 cut(s) 599
BstAPI GCANNNNNTGC 1 cut(s) 475
BstBI TTCGAA 1 cut(s) 345
BstC8I GCNNGC 5 cut(s) 223, 227, 282, 494, 738
BstDSI CCRYGG 3 cut(s) 207, 364, 399
BstENI CCTNNNNNAGG 1 cut(s) 734
BstF5I GGATG 2 cut(s) 547, 600
BstFNI CGCG 3 cut(s) 122, 128, 284
BstH2I RGCGCY 1 cut(s) 602
BstHHI GCGC 3 cut(s) 130, 286, 601
BstKTI GATC 2 cut(s) 504, 842
BstMBI GATC 2 cut(s) 501, 839
BstMCI CGRYCG 1 cut(s) 301
BstMWI GCNNNNNNNGC 4 cut(s) 164, 218, 475, 639
BstNI CCWGG 1 cut(s) 731
BstNSI RCATGY 1 cut(s) 181
BstPAI GACNNNNGTC 1 cut(s) 459
BstSCI CCNGG 4 cut(s) 586, 626, 720, 729
BstUI CGCG 3 cut(s) 122, 128, 284
BstV2I GAAGAC 2 cut(s) 241, 301
BstZI CGGCCG 1 cut(s) 298
BsuRI GGCC 6 cut(s) 212, 255, 300, 562, 626, 756
BtgI CCRYGG 3 cut(s) 207, 364, 399
BtrI CACGTC 1 cut(s) 385
BtsCI GGATG 2 cut(s) 547, 600
Cac8I GCNNGC 5 cut(s) 223, 227, 282, 494, 738
CfoI GCGC 3 cut(s) 130, 286, 601
Cfr13I GGNCC 4 cut(s) 211, 560, 625, 754
CseI GACGC 1 cut(s) 134
CsiI ACCWGGT 1 cut(s) 729
Csp6I GTAC 2 cut(s) 303, 379
CviAII CATG 2 cut(s) 178, 659
CviQI GTAC 2 cut(s) 303, 379
DinI GGCGCC 1 cut(s) 600
DpnI GATC 2 cut(s) 503, 841
DpnII GATC 2 cut(s) 501, 839
DriI GACNNNNNGTC 1 cut(s) 415
EaeI YGGCCR 1 cut(s) 298
EagI CGGCCG 1 cut(s) 298
Eam1104I CTCTTC 1 cut(s) 15
Eam1105I GACNNNNNGTC 1 cut(s) 415
EarI CTCTTC 1 cut(s) 15
EclXI CGGCCG 1 cut(s) 298
Eco130I CCWWGG 1 cut(s) 536
Eco52I CGGCCG 1 cut(s) 298
Eco88I CYCGRG 1 cut(s) 497
EcoNI CCTNNNNNAGG 1 cut(s) 734
EcoRII CCWGG 1 cut(s) 729
EcoT14I CCWWGG 1 cut(s) 536
EgeI GGCGCC 1 cut(s) 600
EheI GGCGCC 1 cut(s) 600
ErhI CCWWGG 1 cut(s) 536
FaeI CATG 2 cut(s) 181, 662
FaiI YATR 4 cut(s) 179, 524, 526, 660
FaqI GGGAC 6 cut(s) 157, 166, 253, 403, 518, 662
FatI CATG 2 cut(s) 177, 658
FauI CCCGC 1 cut(s) 117
FblI GTMKAC 1 cut(s) 555
Fnu4HI GCNGC 1 cut(s) 643
FokI GGATG 2 cut(s) 554, 607
Fsp4HI GCNGC 1 cut(s) 643
FspBI CTAG 1 cut(s) 681
GlaI GCGC 3 cut(s) 129, 285, 600
GluI GCNGC 1 cut(s) 643
HaeII RGCGCY 1 cut(s) 602
HaeIII GGCC 6 cut(s) 212, 255, 300, 562, 626, 756
HapII CCGG 5 cut(s) 464, 587, 615, 628, 721
HgaI GACGC 1 cut(s) 134
HhaI GCGC 3 cut(s) 130, 286, 601
Hin1I GRCGYC 1 cut(s) 599
Hin1II CATG 2 cut(s) 181, 662
Hin6I GCGC 3 cut(s) 128, 284, 599
HinP1I GCGC 3 cut(s) 128, 284, 599
HincII GTYRAC 1 cut(s) 556
HindII GTYRAC 1 cut(s) 556
HinfI GANTC 4 cut(s) 266, 369, 517, 851
HpaII CCGG 5 cut(s) 464, 587, 615, 628, 721
HphI GGTGA 4 cut(s) 11, 250, 601, 884
Hpy166II GTNNAC 2 cut(s) 556, 670
Hpy188I TCNGA 4 cut(s) 190, 487, 594, 850
Hpy188III TCNNGA 3 cut(s) 499, 671, 681
Hpy8I GTNNAC 2 cut(s) 556, 670
Hpy99I CGWCG 7 cut(s) 122, 320, 386, 560, 583, 586, 710
HpyAV CCTTC 2 cut(s) 32, 631
HpyCH4III ACNGT 4 cut(s) 307, 351, 403, 458
HpyCH4IV ACGT 1 cut(s) 384
HpyCH4V TGCA 5 cut(s) 448, 469, 492, 736, 801
HpyF10VI GCNNNNNNNGC 4 cut(s) 164, 218, 475, 639
HpySE526I ACGT 1 cut(s) 384
Hsp92I GRCGYC 1 cut(s) 599
Hsp92II CATG 2 cut(s) 181, 662
HspAI GCGC 3 cut(s) 128, 284, 599
KasI GGCGCC 1 cut(s) 598
Kzo9I GATC 2 cut(s) 501, 839
LmnI GCTCC 2 cut(s) 10, 630
LweI GCATC 1 cut(s) 176
MabI ACCWGGT 1 cut(s) 729
MaeI CTAG 1 cut(s) 681
MaeII ACGT 1 cut(s) 384
MaeIII GTNAC 1 cut(s) 351
MalI GATC 2 cut(s) 503, 841
MboI GATC 2 cut(s) 501, 839
MboII GAAGA 8 cut(s) 5, 8, 17, 241, 301, 706, 791, 878
MluCI AATT 1 cut(s) 238
Mly113I GGCGCC 1 cut(s) 599
MlyI GAGTC 1 cut(s) 275
MmeI TCCRAC 3 cut(s) 177, 510, 572
MseI TTAA 1 cut(s) 892
MspI CCGG 5 cut(s) 464, 587, 615, 628, 721
MspR9I CCNGG 4 cut(s) 588, 628, 722, 731
MvaI CCWGG 1 cut(s) 731
MvnI CGCG 3 cut(s) 122, 128, 284
MwoI GCNNNNNNNGC 4 cut(s) 164, 218, 475, 639
NarI GGCGCC 1 cut(s) 599
NciI CCSGG 3 cut(s) 588, 628, 722
NdeII GATC 2 cut(s) 501, 839
NlaIII CATG 2 cut(s) 181, 662
NlaIV GGNNCC 2 cut(s) 6, 600
NmuCI GTSAC 1 cut(s) 351
NspI RCATGY 1 cut(s) 181
NspV TTCGAA 1 cut(s) 345
PciI ACATGT 1 cut(s) 177
PcsI WCGNNNNNNNCGW 3 cut(s) 303, 378, 504
PfeI GAWTC 3 cut(s) 369, 517, 851
Pfl23II CGTACG 1 cut(s) 378
PkrI GCNGC 1 cut(s) 644
PleI GAGTC 1 cut(s) 274
PluTI GGCGCC 1 cut(s) 602
PpsI GAGTC 1 cut(s) 274
PscI ACATGT 1 cut(s) 177
PshAI GACNNNNGTC 1 cut(s) 459
Psp6I CCWGG 1 cut(s) 729
PspGI CCWGG 1 cut(s) 729
PspLI CGTACG 1 cut(s) 378
PspN4I GGNNCC 2 cut(s) 6, 600
PspPI GGNCC 4 cut(s) 211, 560, 625, 754
RsaI GTAC 2 cut(s) 304, 380
RsaNI GTAC 2 cut(s) 303, 379
SalI GTCGAC 1 cut(s) 554
SaqAI TTAA 1 cut(s) 892
SatI GCNGC 1 cut(s) 643
Sau3AI GATC 2 cut(s) 501, 839
Sau96I GGNCC 4 cut(s) 211, 560, 625, 754
SchI GAGTC 1 cut(s) 275
ScrFI CCNGG 4 cut(s) 588, 628, 722, 731
SetI ASST 8 cut(s) 24, 81, 96, 236, 387, 498, 690, 732
SexAI ACCWGGT 1 cut(s) 729
SfaNI GCATC 1 cut(s) 176
SfoI GGCGCC 1 cut(s) 600
SfuI TTCGAA 1 cut(s) 345
SmlI CTYRAG 1 cut(s) 441
SmoI CTYRAG 1 cut(s) 441
Sse9I AATT 1 cut(s) 238
SsiI CCGC 4 cut(s) 110, 122, 612, 642
SspDI GGCGCC 1 cut(s) 598
SspMI CTAG 1 cut(s) 681
StyD4I CCNGG 4 cut(s) 586, 626, 720, 729
StyI CCWWGG 1 cut(s) 536
TaaI ACNGT 4 cut(s) 307, 351, 403, 458
TaiI ACGT 1 cut(s) 387
TaqI TCGA 5 cut(s) 315, 345, 372, 555, 809
TasI AATT 1 cut(s) 238
TauI GCSGC 1 cut(s) 645
TfiI GAWTC 3 cut(s) 369, 517, 851
Tru1I TTAA 1 cut(s) 892
Tru9I TTAA 1 cut(s) 892
TseFI GTSAC 1 cut(s) 351
Tsp45I GTSAC 1 cut(s) 351
TspDTI ATGAA 1 cut(s) 879
TspGWI ACGGA 3 cut(s) 106, 381, 567
XagI CCTNNNNNAGG 1 cut(s) 734
XbaI TCTAGA 1 cut(s) 680
XceI RCATGY 1 cut(s) 181
XmiI GTMKAC 1 cut(s) 555
XspI CTAG 1 cut(s) 681
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.