Rh6CG071000

Polysaccharide biosynthesis

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0013606
Physical Location & Seq
Reverse (-)
7055137 .. 7057175
2039 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG071000.1

Sequence Viewer

Length: 1023 bp
ATGAAGACCACCACCACCACCACCACCACAACCACCACCGCCAACTCCAACACCAAGCTTATCCTCCTCCACCCTTCCTCCAACTTCCACAAACCCACCACCAATGCCGCCGCTTCCGTCTCCCACCGCCTATGGCTCCTCTTCTTCTTCACTTTCTTCACTCTCGCTTTCGCCCTCGCCCTCATCAACACCACCCTCCCCAACCCAACCACTCTCTCCCCCACCTCCACTATCCCCCTCCCGCCCTCCATCGCAGACGCCCTTCTTCACTACGCCATTTCCTCCAACGCCTCATCCGCATCGTCCCACATGTCCCTCTCCGAAATCACAGCCATCTCCACGGCCCTGACTGCCTGCTCGCACAGGTGTAATTTCCTCATCTTCGGCCTCACCCACGAGTCCCTCCTCTGGCACGCGCTCAATCTCAACGGCCGTACCGTCTTCCTCGACGACAACGAGTTCCTCATCTCCAAGTTCGAACAGTCACACCCCTATCACGGAATCGAAGCGTACGACGTGTCGTTCGCCACCACGGTCAAGGACTTCAAGTCCCTCCTCTCCGCCACCAAGTCTCAAGTCCAAAACGACTGTCGTCCGGTGCAGAACTTGCTGTTTTCCGACTGCAAGCTCGGGATCAACGACTTGCCGAATCACATATACCAAGTCCCTTGGGATGTGATTTTGGTCGACGGGCCAAGTGGGTATTCTCCGGCGTCGCCGGGTCGGATGGCGCCGATTTTCACCGCCGGAGTTTTGGCCCGGAGCAAGAAGGGCGGCGGGGACAAGACCCATGTTTTTGTTCACGATTTTTCTAGAGAGGTTGAGAAGATTAGTAGCGACGAGTTTCTTTGCCGGGAAAACCTGGTGCAGGCTGTGGATTTGTTGGGCCATTTTGTTGTGGAGAAAATGGAAGATAACAGATTTGAGTTTTGCAGAAACTCGACATCATCATCATCATCATCATTACGATCTTCGTCTGAATCATCAGGGAATGAAGACGGTGATGATGATGAAGATGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Polysacc_synt_4

Protein Analysis

340

Amino Acids

37.25

Weight (kDa)

5.55

Isoelectric Point (pI)

45.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IRX15_IRX15L_GXM PF21729 108 - 298 3.6e-76 IRX15/IRX15L/GXM
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013606)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g05560
malus_domestica MD05G1091700.v1.1
prunus_persica Prupe.8G131100_v2.0.a1
pyrus_communis pycom05g08580 pycom14g01040
rosa_chinensis RchiOBHm_Chr6g0255871
rosa_laevigata RLG00000014807
rosa_multiflora Rmu_sc0001738.1_g000001 Rmu_sc0001738.1_g000002
rosa_roxburghii Rroxscaffold_7G00209580
rosa_rugosa Rorug05G0500200 Rorug05G0561900
rosa_samantha Rh6AG080200 Rh6CG005900 Rh6CG071000 Rh6DG006100 Rh6DG068300
rosa_wichuraiana Rw6G006920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 730
AccI GTMKAC 1 cut(s) 687
AccII CGCG 1 cut(s) 416
AclWI GGATC 1 cut(s) 641
AcoI YGGCCR 1 cut(s) 430
AcyI GRCGYC 3 cut(s) 258, 713, 731
AfaI GTAC 2 cut(s) 436, 512
AfiI CCNNNNNNNGG 3 cut(s) 408, 497, 868
AflIII ACRYGT 2 cut(s) 309, 516
AgsI TTSAA 1 cut(s) 547
AhdI GACNNNNNGTC 1 cut(s) 547
AjiI CACGTC 1 cut(s) 517
AjnI CCWGG 1 cut(s) 861
AjuI GAANNNNNNNTTGG 2 cut(s) 688, 720
AluBI AGCT 2 cut(s) 58, 628
AluI AGCT 2 cut(s) 58, 628
Alw26I GTCTC 2 cut(s) 124, 576
AlwI GGATC 1 cut(s) 641
Ama87I CYCGRG 1 cut(s) 629
AoxI GGCC 6 cut(s) 342, 385, 430, 692, 756, 886
ArsI GACNNNNNNTTYG 4 cut(s) 506, 538, 574, 606
AspLEI GCGC 2 cut(s) 418, 733
AspS9I GGNCC 4 cut(s) 343, 692, 757, 886
AsuC2I CCSGG 3 cut(s) 720, 760, 854
AsuHPI GGTGA 3 cut(s) 382, 733, 1013
AsuII TTCGAA 1 cut(s) 477
AvaI CYCGRG 1 cut(s) 629
BaeI ACNNNNGTAYC 2 cut(s) 418, 451
BanI GGYRCC 1 cut(s) 730
BauI CACGAG 1 cut(s) 395
BbsI GAAGAC 3 cut(s) 11, 433, 1002
BccI CCATC 3 cut(s) 257, 341, 721
BceAI ACGGC 3 cut(s) 357, 417, 445
BciT130I CCWGG 1 cut(s) 863
BcnI CCSGG 3 cut(s) 720, 760, 854
BcoDI GTCTC 2 cut(s) 124, 576
BfaI CTAG 1 cut(s) 813
BfoI RGCGCY 1 cut(s) 734
BisI GCNGC 3 cut(s) 108, 111, 775
BlsI GCNGC 3 cut(s) 109, 112, 776
Bme1390I CCNGG 4 cut(s) 720, 760, 854, 863
BmeRI GACNNNNNGTC 1 cut(s) 547
BmeT110I CYCGRG 1 cut(s) 629
BmgBI CACGTC 1 cut(s) 517
BmgT120I GGNCC 4 cut(s) 343, 692, 757, 886
BmiI GGNNCC 2 cut(s) 137, 732
BmrFI CCNGG 4 cut(s) 720, 760, 854, 863
BmsI GCATC 1 cut(s) 308
BoxI GACNNNNGTC 1 cut(s) 591
BpiI GAAGAC 3 cut(s) 11, 433, 1002
Bpu14I TTCGAA 1 cut(s) 477
BpuEI CTTGAG 1 cut(s) 558
BpuMI CCSGG 3 cut(s) 720, 760, 854
BsaHI GRCGYC 3 cut(s) 258, 713, 731
BsaJI CCNNGG 3 cut(s) 339, 531, 668
BsaWI WCCGGW 1 cut(s) 595
BsaXI ACNNNNNCTCC 2 cut(s) 62, 92
Bsc4I CCNNNNNNNGG 3 cut(s) 408, 497, 868
BseBI CCWGG 1 cut(s) 863
BseDI CCNNGG 3 cut(s) 339, 531, 668
BseGI GGATG 3 cut(s) 293, 679, 732
BseLI CCNNNNNNNGG 3 cut(s) 408, 497, 868
BseRI GAGGAG 4 cut(s) 56, 128, 395, 545
BseX3I CGGCCG 1 cut(s) 430
BsgI GTGCAG 2 cut(s) 620, 887
Bsh1236I CGCG 1 cut(s) 416
Bsh1285I CGRYCG 1 cut(s) 433
BshFI GGCC 6 cut(s) 344, 387, 432, 694, 758, 888
BshNI GGYRCC 1 cut(s) 730
BsiEI CGRYCG 1 cut(s) 433
BsiHKCI CYCGRG 1 cut(s) 629
BsiSI CCGG 6 cut(s) 596, 710, 719, 747, 760, 853
BsiWI CGTACG 1 cut(s) 510
BslFI GGGAC 6 cut(s) 289, 298, 385, 535, 650, 794
BslI CCNNNNNNNGG 3 cut(s) 408, 497, 868
BsmAI GTCTC 2 cut(s) 124, 576
BsmBI CGTCTC 1 cut(s) 124
BsmFI GGGAC 6 cut(s) 289, 298, 385, 535, 650, 794
BsnI GGCC 6 cut(s) 344, 387, 432, 694, 758, 888
BsoBI CYCGRG 1 cut(s) 629
Bsp119I TTCGAA 1 cut(s) 477
Bsp143I GATC 2 cut(s) 633, 968
BspANI GGCC 6 cut(s) 344, 387, 432, 694, 758, 888
BspFNI CGCG 1 cut(s) 416
BspLI GGNNCC 2 cut(s) 137, 732
BspPI GGATC 1 cut(s) 641
BspT104I TTCGAA 1 cut(s) 477
BspT107I GGYRCC 1 cut(s) 730
BssECI CCNNGG 3 cut(s) 339, 531, 668
BssMI GATC 2 cut(s) 633, 968
BssNI GRCGYC 3 cut(s) 258, 713, 731
BssSI CACGAG 1 cut(s) 395
BssT1I CCWWGG 1 cut(s) 668
Bst2BI CACGAG 1 cut(s) 395
Bst2UI CCWGG 1 cut(s) 863
Bst4CI ACNGT 5 cut(s) 439, 483, 535, 590, 1001
Bst6I CTCTTC 1 cut(s) 146
BstACI GRCGYC 3 cut(s) 258, 713, 731
BstAPI GCANNNNNTGC 1 cut(s) 607
BstBI TTCGAA 1 cut(s) 477
BstC8I GCNNGC 5 cut(s) 355, 359, 414, 626, 870
BstDSI CCRYGG 2 cut(s) 339, 531
BstENI CCTNNNNNAGG 1 cut(s) 866
BstF5I GGATG 3 cut(s) 293, 679, 732
BstFNI CGCG 1 cut(s) 416
BstH2I RGCGCY 1 cut(s) 734
BstHHI GCGC 2 cut(s) 418, 733
BstKTI GATC 2 cut(s) 636, 971
BstMAI GTCTC 2 cut(s) 124, 576
BstMBI GATC 2 cut(s) 633, 968
BstMCI CGRYCG 1 cut(s) 433
BstMWI GCNNNNNNNGC 4 cut(s) 296, 350, 607, 771
BstNI CCWGG 1 cut(s) 863
BstNSI RCATGY 1 cut(s) 313
BstPAI GACNNNNGTC 1 cut(s) 591
BstSCI CCNGG 4 cut(s) 718, 758, 852, 861
BstUI CGCG 1 cut(s) 416
BstV2I GAAGAC 3 cut(s) 11, 433, 1002
BstZI CGGCCG 1 cut(s) 430
BsuRI GGCC 6 cut(s) 344, 387, 432, 694, 758, 888
BtgI CCRYGG 2 cut(s) 339, 531
BtgZI GCGATG 1 cut(s) 235
BtrI CACGTC 1 cut(s) 517
BtsCI GGATG 3 cut(s) 293, 679, 732
Cac8I GCNNGC 5 cut(s) 355, 359, 414, 626, 870
CfoI GCGC 2 cut(s) 418, 733
Cfr13I GGNCC 4 cut(s) 343, 692, 757, 886
CseI GACGC 2 cut(s) 266, 702
CsiI ACCWGGT 1 cut(s) 861
Csp6I GTAC 2 cut(s) 435, 511
CviAII CATG 2 cut(s) 310, 791
CviQI GTAC 2 cut(s) 435, 511
DinI GGCGCC 1 cut(s) 732
DpnI GATC 2 cut(s) 635, 970
DpnII GATC 2 cut(s) 633, 968
DriI GACNNNNNGTC 1 cut(s) 547
EaeI YGGCCR 1 cut(s) 430
EagI CGGCCG 1 cut(s) 430
Eam1104I CTCTTC 1 cut(s) 146
Eam1105I GACNNNNNGTC 1 cut(s) 547
EarI CTCTTC 1 cut(s) 146
EciI GGCGGA 1 cut(s) 550
EclXI CGGCCG 1 cut(s) 430
Eco130I CCWWGG 1 cut(s) 668
Eco52I CGGCCG 1 cut(s) 430
Eco88I CYCGRG 1 cut(s) 629
EcoNI CCTNNNNNAGG 1 cut(s) 866
EcoRII CCWGG 1 cut(s) 861
EcoT14I CCWWGG 1 cut(s) 668
EgeI GGCGCC 1 cut(s) 732
EheI GGCGCC 1 cut(s) 732
ErhI CCWWGG 1 cut(s) 668
Esp3I CGTCTC 1 cut(s) 124
FaeI CATG 2 cut(s) 313, 794
FaiI YATR 5 cut(s) 133, 311, 656, 658, 792
FaqI GGGAC 6 cut(s) 289, 298, 385, 535, 650, 794
FatI CATG 2 cut(s) 309, 790
FauI CCCGC 2 cut(s) 249, 770
FblI GTMKAC 1 cut(s) 687
Fnu4HI GCNGC 3 cut(s) 108, 111, 775
FokI GGATG 3 cut(s) 280, 686, 739
Fsp4HI GCNGC 3 cut(s) 108, 111, 775
FspBI CTAG 1 cut(s) 813
GlaI GCGC 2 cut(s) 417, 732
GluI GCNGC 3 cut(s) 108, 111, 775
HaeII RGCGCY 1 cut(s) 734
HaeIII GGCC 6 cut(s) 344, 387, 432, 694, 758, 888
HapII CCGG 6 cut(s) 596, 710, 719, 747, 760, 853
HgaI GACGC 2 cut(s) 266, 702
HhaI GCGC 2 cut(s) 418, 733
Hin1I GRCGYC 3 cut(s) 258, 713, 731
Hin1II CATG 2 cut(s) 313, 794
Hin6I GCGC 2 cut(s) 416, 731
HinP1I GCGC 2 cut(s) 416, 731
HincII GTYRAC 1 cut(s) 688
HindII GTYRAC 1 cut(s) 688
HindIII AAGCTT 1 cut(s) 56
HinfI GANTC 4 cut(s) 398, 501, 649, 980
HpaII CCGG 6 cut(s) 596, 710, 719, 747, 760, 853
HphI GGTGA 3 cut(s) 382, 733, 1013
Hpy166II GTNNAC 2 cut(s) 688, 802
Hpy188I TCNGA 4 cut(s) 322, 619, 726, 979
Hpy188III TCNNGA 3 cut(s) 631, 803, 813
Hpy8I GTNNAC 2 cut(s) 688, 802
Hpy99I CGWCG 5 cut(s) 452, 518, 692, 718, 842
HpyAV CCTTC 3 cut(s) 84, 272, 763
HpyCH4III ACNGT 5 cut(s) 439, 483, 535, 590, 1001
HpyCH4IV ACGT 1 cut(s) 516
HpyCH4V TGCA 4 cut(s) 601, 624, 868, 933
HpyF10VI GCNNNNNNNGC 4 cut(s) 296, 350, 607, 771
HpySE526I ACGT 1 cut(s) 516
Hsp92I GRCGYC 3 cut(s) 258, 713, 731
Hsp92II CATG 2 cut(s) 313, 794
HspAI GCGC 2 cut(s) 416, 731
KasI GGCGCC 1 cut(s) 730
Kzo9I GATC 2 cut(s) 633, 968
LmnI GCTCC 2 cut(s) 141, 762
LweI GCATC 1 cut(s) 308
MabI ACCWGGT 1 cut(s) 861
MaeI CTAG 1 cut(s) 813
MaeII ACGT 1 cut(s) 516
MaeIII GTNAC 1 cut(s) 483
MalI GATC 2 cut(s) 635, 970
MboI GATC 2 cut(s) 633, 968
MluCI AATT 1 cut(s) 370
Mly113I GGCGCC 1 cut(s) 731
MlyI GAGTC 1 cut(s) 407
MmeI TCCRAC 5 cut(s) 72, 105, 309, 642, 704
MseI TTAA 1 cut(s) 1021
MspI CCGG 6 cut(s) 596, 710, 719, 747, 760, 853
MspR9I CCNGG 4 cut(s) 720, 760, 854, 863
MvaI CCWGG 1 cut(s) 863
MvnI CGCG 1 cut(s) 416
MwoI GCNNNNNNNGC 4 cut(s) 296, 350, 607, 771
NarI GGCGCC 1 cut(s) 731
NciI CCSGG 3 cut(s) 720, 760, 854
NdeII GATC 2 cut(s) 633, 968
NlaIII CATG 2 cut(s) 313, 794
NlaIV GGNNCC 2 cut(s) 137, 732
NmuCI GTSAC 1 cut(s) 483
NspI RCATGY 1 cut(s) 313
NspV TTCGAA 1 cut(s) 477
PciI ACATGT 1 cut(s) 309
PcsI WCGNNNNNNNCGW 4 cut(s) 435, 453, 510, 636
PfeI GAWTC 3 cut(s) 501, 649, 980
Pfl23II CGTACG 1 cut(s) 510
PkrI GCNGC 3 cut(s) 109, 112, 776
PleI GAGTC 1 cut(s) 406
PluTI GGCGCC 1 cut(s) 734
PpsI GAGTC 1 cut(s) 406
PscI ACATGT 1 cut(s) 309
PshAI GACNNNNGTC 1 cut(s) 591
Psp6I CCWGG 1 cut(s) 861
PspGI CCWGG 1 cut(s) 861
PspLI CGTACG 1 cut(s) 510
PspN4I GGNNCC 2 cut(s) 137, 732
PspPI GGNCC 4 cut(s) 343, 692, 757, 886
RsaI GTAC 2 cut(s) 436, 512
RsaNI GTAC 2 cut(s) 435, 511
SalI GTCGAC 1 cut(s) 686
SaqAI TTAA 1 cut(s) 1021
SatI GCNGC 3 cut(s) 108, 111, 775
Sau3AI GATC 2 cut(s) 633, 968
Sau96I GGNCC 4 cut(s) 343, 692, 757, 886
SchI GAGTC 1 cut(s) 407
ScrFI CCNGG 4 cut(s) 720, 760, 854, 863
SetI ASST 7 cut(s) 60, 227, 368, 519, 630, 822, 864
SexAI ACCWGGT 1 cut(s) 861
SfaNI GCATC 1 cut(s) 308
SfoI GGCGCC 1 cut(s) 732
SfuI TTCGAA 1 cut(s) 477
SmlI CTYRAG 1 cut(s) 573
SmoI CTYRAG 1 cut(s) 573
Sse9I AATT 1 cut(s) 370
SspDI GGCGCC 1 cut(s) 730
SspMI CTAG 1 cut(s) 813
StyD4I CCNGG 4 cut(s) 718, 758, 852, 861
StyI CCWWGG 1 cut(s) 668
TaaI ACNGT 5 cut(s) 439, 483, 535, 590, 1001
TaiI ACGT 1 cut(s) 519
TaqI TCGA 5 cut(s) 447, 477, 504, 687, 941
TasI AATT 1 cut(s) 370
TauI GCSGC 3 cut(s) 110, 113, 777
TfiI GAWTC 3 cut(s) 501, 649, 980
Tru1I TTAA 1 cut(s) 1021
Tru9I TTAA 1 cut(s) 1021
TseFI GTSAC 1 cut(s) 483
Tsp45I GTSAC 1 cut(s) 483
TspDTI ATGAA 2 cut(s) 17, 1008
TspGWI ACGGA 2 cut(s) 106, 513
XagI CCTNNNNNAGG 1 cut(s) 866
XbaI TCTAGA 1 cut(s) 812
XceI RCATGY 1 cut(s) 313
XmiI GTMKAC 1 cut(s) 687
XspI CTAG 1 cut(s) 813
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.