Rw6G006920

Polysaccharide biosynthesis

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0013606
Physical Location & Seq
Reverse (-)
11059972 .. 11061401
1430 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G006920.1

Sequence Viewer

Length: 1020 bp
ATGAAGTCCACCACCACCACCACAACCACTACCGCCAACTCCAACACGAAGCTCATCCTCCTCCACCCTTCCTCCAACTTCCACAAACCCACCACCAATGCCGCCGCTTCCGTCTCCCACCGCCTATGGCTCCTCTTCTTCTTCACCTTCTTCACTCTCGCTTTCGCCCTCGCCCTCATCAACACCACCCTCCCCAACCCCACCTCTCTCTCCCCCACCTCCACTATCCCCCTCCCGCCCTCCGTCGCCGACGCGCTTCTCCACTACGCCATTTCCTCCAACGCCTCGTCCGCATCGTCCCACATGTCCCTCTCCGAAATCACAGCCATCTCCACGGCCCTGACTGCCTGCTCGCACAGGTGTAATTTCCTCGTCTTCGGCCTCACCCACGAGTCCCTCCTCTGGCACGCGCTCAATCTCAACGGCCGTACCGTCTTCCTCGACGACAATGAGTTCCTCATCTCCAAGTTCGAACAGTCACACCCCTACCACGGAATCGAAGCGTACGACGTGTCGTTCGCTACCACGGTCAAGGACTTCAAGTCCCTCCTCTCCTCCACCAAATCTCAAGTGCAAAACGACTGCCGTCCGGTGCAGAACTTGCTATTTTCCGACTGCAAGCTCGGGATCAACGACTTGCCGAATCACATATACCAAGTCCCTTGGGATGTGATTTTGGTCGACGGGCCAAGTGGGTATTCTCCGTCGTCGCCGGGTCGGATGGCGCCGATTTTCACCGCCGGAGTTTTGGCCCGGAGCAAGAAGGGCGGCAGGGACAAGACCCATGTTTTTGTTCACGATTTTTCTAGAGAGGTTGAGAAGATTAGTAGCGACGAGTTTCTTTGCCGGGAAAACCTGGTGCAGGCTGTGGATTTGTTGGGCCATTTTGTTGTGGAGAAAATGGAAGATAACAGATTTGAGTTTTGCAGAAACTCGACATCATCACCATCGTCATCATCATTACGATCTTGGTCTGAATCATCACGGAATGAAGATGGTGATGATGATGAAGATGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Polysacc_synt_4

Protein Analysis

339

Amino Acids

37.42

Weight (kDa)

5.74

Isoelectric Point (pI)

47.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IRX15_IRX15L_GXM PF21729 106 - 296 3.5e-76 IRX15/IRX15L/GXM
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013606)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g05560
malus_domestica MD05G1091700.v1.1
prunus_persica Prupe.8G131100_v2.0.a1
pyrus_communis pycom05g08580 pycom14g01040
rosa_chinensis RchiOBHm_Chr6g0255871
rosa_laevigata RLG00000014807
rosa_multiflora Rmu_sc0001738.1_g000001 Rmu_sc0001738.1_g000002
rosa_roxburghii Rroxscaffold_7G00209580
rosa_rugosa Rorug05G0500200 Rorug05G0561900
rosa_samantha Rh6AG080200 Rh6CG005900 Rh6CG071000 Rh6DG006100 Rh6DG068300
rosa_wichuraiana Rw6G006920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 724
AccI GTMKAC 1 cut(s) 681
AccII CGCG 2 cut(s) 254, 410
AciI CCGC 8 cut(s) 33, 102, 105, 121, 236, 291, 738, 768
AclWI GGATC 1 cut(s) 635
AcoI YGGCCR 1 cut(s) 424
AcyI GRCGYC 1 cut(s) 725
AfaI GTAC 2 cut(s) 430, 506
AfiI CCNNNNNNNGG 3 cut(s) 402, 491, 862
AflIII ACRYGT 2 cut(s) 303, 510
AgsI TTSAA 1 cut(s) 541
AhdI GACNNNNNGTC 1 cut(s) 541
AjiI CACGTC 1 cut(s) 511
AjnI CCWGG 1 cut(s) 855
AjuI GAANNNNNNNTTGG 2 cut(s) 682, 714
AluBI AGCT 2 cut(s) 52, 622
AluI AGCT 2 cut(s) 52, 622
Alw26I GTCTC 1 cut(s) 118
AlwI GGATC 1 cut(s) 635
Ama87I CYCGRG 1 cut(s) 623
AoxI GGCC 6 cut(s) 336, 379, 424, 686, 750, 880
ArsI GACNNNNNNTTYG 2 cut(s) 500, 532
AspLEI GCGC 3 cut(s) 256, 412, 727
AspS9I GGNCC 4 cut(s) 337, 686, 751, 880
AsuC2I CCSGG 3 cut(s) 714, 754, 848
AsuHPI GGTGA 5 cut(s) 136, 376, 727, 936, 1010
AsuII TTCGAA 1 cut(s) 471
AvaI CYCGRG 1 cut(s) 623
BaeI ACNNNNGTAYC 2 cut(s) 412, 445
BanI GGYRCC 1 cut(s) 724
BauI CACGAG 1 cut(s) 389
BbsI GAAGAC 2 cut(s) 367, 427
BccI CCATC 4 cut(s) 335, 715, 955, 989
BceAI ACGGC 4 cut(s) 351, 411, 439, 570
BciT130I CCWGG 1 cut(s) 857
BcnI CCSGG 3 cut(s) 714, 754, 848
BcoDI GTCTC 1 cut(s) 118
BfaI CTAG 1 cut(s) 807
BfoI RGCGCY 1 cut(s) 728
BisI GCNGC 3 cut(s) 102, 105, 769
BlsI GCNGC 3 cut(s) 103, 106, 770
Bme1390I CCNGG 4 cut(s) 714, 754, 848, 857
BmeRI GACNNNNNGTC 1 cut(s) 541
BmeT110I CYCGRG 1 cut(s) 623
BmgBI CACGTC 1 cut(s) 511
BmgT120I GGNCC 4 cut(s) 337, 686, 751, 880
BmiI GGNNCC 2 cut(s) 131, 726
BmrFI CCNGG 4 cut(s) 714, 754, 848, 857
BmsI GCATC 1 cut(s) 302
BoxI GACNNNNGTC 1 cut(s) 585
BpiI GAAGAC 2 cut(s) 367, 427
Bpu14I TTCGAA 1 cut(s) 471
BpuEI CTTGAG 1 cut(s) 552
BpuMI CCSGG 3 cut(s) 714, 754, 848
BsaHI GRCGYC 1 cut(s) 725
BsaJI CCNNGG 4 cut(s) 333, 490, 525, 662
BsaWI WCCGGW 1 cut(s) 589
BsaXI ACNNNNNCTCC 2 cut(s) 56, 86
Bsc4I CCNNNNNNNGG 3 cut(s) 402, 491, 862
BseBI CCWGG 1 cut(s) 857
BseDI CCNNGG 4 cut(s) 333, 490, 525, 662
BseGI GGATG 3 cut(s) 54, 673, 726
BseLI CCNNNNNNNGG 3 cut(s) 402, 491, 862
BseRI GAGGAG 5 cut(s) 50, 122, 389, 539, 544
BseX3I CGGCCG 1 cut(s) 424
BsgI GTGCAG 2 cut(s) 614, 881
Bsh1236I CGCG 2 cut(s) 254, 410
Bsh1285I CGRYCG 1 cut(s) 427
BshFI GGCC 6 cut(s) 338, 381, 426, 688, 752, 882
BshNI GGYRCC 1 cut(s) 724
BsiEI CGRYCG 1 cut(s) 427
BsiHKCI CYCGRG 1 cut(s) 623
BsiSI CCGG 5 cut(s) 590, 713, 741, 754, 847
BsiWI CGTACG 1 cut(s) 504
BslFI GGGAC 6 cut(s) 283, 292, 379, 529, 644, 788
BslI CCNNNNNNNGG 3 cut(s) 402, 491, 862
BsmAI GTCTC 1 cut(s) 118
BsmBI CGTCTC 1 cut(s) 118
BsmFI GGGAC 6 cut(s) 283, 292, 379, 529, 644, 788
BsnI GGCC 6 cut(s) 338, 381, 426, 688, 752, 882
BsoBI CYCGRG 1 cut(s) 623
Bsp119I TTCGAA 1 cut(s) 471
Bsp143I GATC 2 cut(s) 627, 965
BspACI CCGC 8 cut(s) 33, 102, 105, 121, 236, 291, 738, 768
BspANI GGCC 6 cut(s) 338, 381, 426, 688, 752, 882
BspFNI CGCG 2 cut(s) 254, 410
BspLI GGNNCC 2 cut(s) 131, 726
BspPI GGATC 1 cut(s) 635
BspT104I TTCGAA 1 cut(s) 471
BspT107I GGYRCC 1 cut(s) 724
BssECI CCNNGG 4 cut(s) 333, 490, 525, 662
BssMI GATC 2 cut(s) 627, 965
BssNI GRCGYC 1 cut(s) 725
BssSI CACGAG 1 cut(s) 389
BssT1I CCWWGG 1 cut(s) 662
Bst2BI CACGAG 1 cut(s) 389
Bst2UI CCWGG 1 cut(s) 857
Bst4CI ACNGT 3 cut(s) 433, 477, 529
Bst6I CTCTTC 1 cut(s) 140
BstACI GRCGYC 1 cut(s) 725
BstAPI GCANNNNNTGC 1 cut(s) 601
BstBI TTCGAA 1 cut(s) 471
BstC8I GCNNGC 5 cut(s) 349, 353, 408, 620, 864
BstDSI CCRYGG 3 cut(s) 333, 490, 525
BstENI CCTNNNNNAGG 1 cut(s) 860
BstF5I GGATG 3 cut(s) 54, 673, 726
BstFNI CGCG 2 cut(s) 254, 410
BstH2I RGCGCY 1 cut(s) 728
BstHHI GCGC 3 cut(s) 256, 412, 727
BstKTI GATC 2 cut(s) 630, 968
BstMAI GTCTC 1 cut(s) 118
BstMBI GATC 2 cut(s) 627, 965
BstMCI CGRYCG 1 cut(s) 427
BstMWI GCNNNNNNNGC 4 cut(s) 290, 344, 601, 765
BstNI CCWGG 1 cut(s) 857
BstNSI RCATGY 1 cut(s) 307
BstPAI GACNNNNGTC 1 cut(s) 585
BstSCI CCNGG 4 cut(s) 712, 752, 846, 855
BstUI CGCG 2 cut(s) 254, 410
BstV2I GAAGAC 2 cut(s) 367, 427
BstZI CGGCCG 1 cut(s) 424
BsuRI GGCC 6 cut(s) 338, 381, 426, 688, 752, 882
BtgI CCRYGG 3 cut(s) 333, 490, 525
BtrI CACGTC 1 cut(s) 511
BtsCI GGATG 3 cut(s) 54, 673, 726
Cac8I GCNNGC 5 cut(s) 349, 353, 408, 620, 864
CfoI GCGC 3 cut(s) 256, 412, 727
Cfr13I GGNCC 4 cut(s) 337, 686, 751, 880
CseI GACGC 1 cut(s) 260
CsiI ACCWGGT 1 cut(s) 855
Csp6I GTAC 2 cut(s) 429, 505
CviAII CATG 2 cut(s) 304, 785
CviQI GTAC 2 cut(s) 429, 505
DinI GGCGCC 1 cut(s) 726
DpnI GATC 2 cut(s) 629, 967
DpnII GATC 2 cut(s) 627, 965
DriI GACNNNNNGTC 1 cut(s) 541
EaeI YGGCCR 1 cut(s) 424
EagI CGGCCG 1 cut(s) 424
Eam1104I CTCTTC 1 cut(s) 140
Eam1105I GACNNNNNGTC 1 cut(s) 541
EarI CTCTTC 1 cut(s) 140
EclXI CGGCCG 1 cut(s) 424
Eco130I CCWWGG 1 cut(s) 662
Eco52I CGGCCG 1 cut(s) 424
Eco88I CYCGRG 1 cut(s) 623
EcoNI CCTNNNNNAGG 1 cut(s) 860
EcoRII CCWGG 1 cut(s) 855
EcoT14I CCWWGG 1 cut(s) 662
EgeI GGCGCC 1 cut(s) 726
EheI GGCGCC 1 cut(s) 726
ErhI CCWWGG 1 cut(s) 662
Esp3I CGTCTC 1 cut(s) 118
FaeI CATG 2 cut(s) 307, 788
FaiI YATR 5 cut(s) 127, 305, 650, 652, 786
FaqI GGGAC 6 cut(s) 283, 292, 379, 529, 644, 788
FatI CATG 2 cut(s) 303, 784
FauI CCCGC 1 cut(s) 243
FblI GTMKAC 1 cut(s) 681
Fnu4HI GCNGC 3 cut(s) 102, 105, 769
FokI GGATG 3 cut(s) 41, 680, 733
Fsp4HI GCNGC 3 cut(s) 102, 105, 769
FspBI CTAG 1 cut(s) 807
GlaI GCGC 3 cut(s) 255, 411, 726
GluI GCNGC 3 cut(s) 102, 105, 769
HaeII RGCGCY 1 cut(s) 728
HaeIII GGCC 6 cut(s) 338, 381, 426, 688, 752, 882
HapII CCGG 5 cut(s) 590, 713, 741, 754, 847
HgaI GACGC 1 cut(s) 260
HhaI GCGC 3 cut(s) 256, 412, 727
Hin1I GRCGYC 1 cut(s) 725
Hin1II CATG 2 cut(s) 307, 788
Hin6I GCGC 3 cut(s) 254, 410, 725
HinP1I GCGC 3 cut(s) 254, 410, 725
HincII GTYRAC 1 cut(s) 682
HindII GTYRAC 1 cut(s) 682
HinfI GANTC 4 cut(s) 392, 495, 643, 977
HpaII CCGG 5 cut(s) 590, 713, 741, 754, 847
HphI GGTGA 5 cut(s) 136, 376, 727, 936, 1010
Hpy166II GTNNAC 3 cut(s) 9, 682, 796
Hpy188I TCNGA 4 cut(s) 316, 613, 720, 976
Hpy188III TCNNGA 3 cut(s) 625, 797, 807
Hpy8I GTNNAC 3 cut(s) 9, 682, 796
Hpy99I CGWCG 8 cut(s) 248, 254, 446, 512, 686, 709, 712, 836
HpyAV CCTTC 3 cut(s) 78, 157, 757
HpyCH4III ACNGT 3 cut(s) 433, 477, 529
HpyCH4IV ACGT 1 cut(s) 510
HpyCH4V TGCA 5 cut(s) 574, 595, 618, 862, 927
HpyF10VI GCNNNNNNNGC 4 cut(s) 290, 344, 601, 765
HpySE526I ACGT 1 cut(s) 510
Hsp92I GRCGYC 1 cut(s) 725
Hsp92II CATG 2 cut(s) 307, 788
HspAI GCGC 3 cut(s) 254, 410, 725
KasI GGCGCC 1 cut(s) 724
Kzo9I GATC 2 cut(s) 627, 965
LmnI GCTCC 2 cut(s) 135, 756
LweI GCATC 1 cut(s) 302
MabI ACCWGGT 1 cut(s) 855
MaeI CTAG 1 cut(s) 807
MaeII ACGT 1 cut(s) 510
MaeIII GTNAC 1 cut(s) 477
MalI GATC 2 cut(s) 629, 967
MboI GATC 2 cut(s) 627, 965
MboII GAAGA 9 cut(s) 127, 130, 133, 142, 367, 427, 832, 917, 1004
MluCI AATT 1 cut(s) 364
Mly113I GGCGCC 1 cut(s) 725
MlyI GAGTC 1 cut(s) 401
MmeI TCCRAC 5 cut(s) 66, 99, 303, 636, 698
MseI TTAA 1 cut(s) 1018
MspI CCGG 5 cut(s) 590, 713, 741, 754, 847
MspR9I CCNGG 4 cut(s) 714, 754, 848, 857
MvaI CCWGG 1 cut(s) 857
MvnI CGCG 2 cut(s) 254, 410
MwoI GCNNNNNNNGC 4 cut(s) 290, 344, 601, 765
NarI GGCGCC 1 cut(s) 725
NciI CCSGG 3 cut(s) 714, 754, 848
NdeII GATC 2 cut(s) 627, 965
NlaIII CATG 2 cut(s) 307, 788
NlaIV GGNNCC 2 cut(s) 131, 726
NmuCI GTSAC 1 cut(s) 477
NspI RCATGY 1 cut(s) 307
NspV TTCGAA 1 cut(s) 471
PciI ACATGT 1 cut(s) 303
PcsI WCGNNNNNNNCGW 4 cut(s) 293, 429, 504, 630
PfeI GAWTC 3 cut(s) 495, 643, 977
Pfl23II CGTACG 1 cut(s) 504
PkrI GCNGC 3 cut(s) 103, 106, 770
PleI GAGTC 1 cut(s) 400
PluTI GGCGCC 1 cut(s) 728
PpsI GAGTC 1 cut(s) 400
PscI ACATGT 1 cut(s) 303
PshAI GACNNNNGTC 1 cut(s) 585
Psp6I CCWGG 1 cut(s) 855
PspGI CCWGG 1 cut(s) 855
PspLI CGTACG 1 cut(s) 504
PspN4I GGNNCC 2 cut(s) 131, 726
PspPI GGNCC 4 cut(s) 337, 686, 751, 880
RsaI GTAC 2 cut(s) 430, 506
RsaNI GTAC 2 cut(s) 429, 505
SalI GTCGAC 1 cut(s) 680
SaqAI TTAA 1 cut(s) 1018
SatI GCNGC 3 cut(s) 102, 105, 769
Sau3AI GATC 2 cut(s) 627, 965
Sau96I GGNCC 4 cut(s) 337, 686, 751, 880
SchI GAGTC 1 cut(s) 401
ScrFI CCNGG 4 cut(s) 714, 754, 848, 857
SetI ASST 9 cut(s) 54, 149, 206, 221, 362, 513, 624, 816, 858
SexAI ACCWGGT 1 cut(s) 855
SfaNI GCATC 1 cut(s) 302
SfoI GGCGCC 1 cut(s) 726
SfuI TTCGAA 1 cut(s) 471
SmlI CTYRAG 1 cut(s) 567
SmoI CTYRAG 1 cut(s) 567
Sse9I AATT 1 cut(s) 364
SsiI CCGC 8 cut(s) 33, 102, 105, 121, 236, 291, 738, 768
SspDI GGCGCC 1 cut(s) 724
SspMI CTAG 1 cut(s) 807
StyD4I CCNGG 4 cut(s) 712, 752, 846, 855
StyI CCWWGG 1 cut(s) 662
TaaI ACNGT 3 cut(s) 433, 477, 529
TaiI ACGT 1 cut(s) 513
TaqI TCGA 5 cut(s) 441, 471, 498, 681, 935
TasI AATT 1 cut(s) 364
TauI GCSGC 3 cut(s) 104, 107, 771
TfiI GAWTC 3 cut(s) 495, 643, 977
Tru1I TTAA 1 cut(s) 1018
Tru9I TTAA 1 cut(s) 1018
TseFI GTSAC 1 cut(s) 477
Tsp45I GTSAC 1 cut(s) 477
TspDTI ATGAA 2 cut(s) 17, 1005
TspGWI ACGGA 5 cut(s) 100, 232, 507, 693, 1000
XagI CCTNNNNNAGG 1 cut(s) 860
XbaI TCTAGA 1 cut(s) 806
XceI RCATGY 1 cut(s) 307
XmiI GTMKAC 1 cut(s) 681
XspI CTAG 1 cut(s) 807
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.