FvH4_2g05880

DJ-1/PfpI family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Forward (+)
4868255 .. 4872218
3964 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g05880.t3

Sequence Viewer

Length: 1371 bp
ATGGAGTCTGTGTGTTCAGTTCTCTCCTTCTCTTACCCAAAGCTTACTTCAATGGCTACTCTTCATTCTTCTTTCCGTATCAAGAACGTGGCCTCCTCTGGCCAGAGAGTTGCAGCTACTGTAAAAACATCTGAAATTCCAAATAAAACCCTCAACCCGTTTGAAGTAATTTTGGGTACAAGCACTGCTGCTTCTTTACCTCCCAAGAAGGTTCTGGTGCCGATTGGGTTTGGGACTGAAGAAATGGAGGCTGTGATTATGGTGGATGTTCTGCGGCGAGCGGGTGCTGATGTCACCGTGGCCTCGGTGGAGCCACAGCTCCAAGTTGAAGCTTCTTGTGGGACTAAGTTGGTTGCTGATACCTCCATTTCCTCCTGTTCTGATCAAATTTTTGATCTTGTGGCTTTACCAGGAGGAATGCCTGGCTCGGTGAGATTAAGGGACTGCGAAGTACTTGAGAAAATTACAAGACAACAGGCTGAGAAAAGGAGGTTATATGGAGCTATATGTGCTGCTCCAGCAGTAACACTTCTCCCGTGGGGTCTTCTAAGGAGAAAGCAGACAACTTGCCACCCTGCATTCTTTGACAAGCTACCAACCTTCTGGGCAGTCAAATCAAACATTCAAGTCTCTGGAGTGCTCACAACAAGCCGTGGCCCCGGAACTTGTTTTGTGTTTGCGCTGTGCCTAGTGGAACAGCTATTTGGGGAATCTGTCGCCAAGGAAATTGGAGAGTTGCTGTTGGTGGGACCTGCTGATGATGAATCTAGAAAGGAGGAGTTCAACAAAATTGAATGGTCTTTTGATCACATTCCTCGAGTTCTCATTCCAGTTGCAAATGGTTCTGAAGTGATTGAAGTAGTGACTATTGTAGATATTCTGCGGCGAGCAAAGGTGGACATAACTGTTGCTTCAGTTGAAAAATCTGTGCAGATTTTAGCATCTCAAGGCACCAAAATCATAGCTGACAAGTTAATTGGTGTAGCTGCCAAGTCAACTTATGATTTGATCGTTCTGCCGGGAGGAAATGCTGGGGCTGAGCGGCTAAGCAGATCTAGAATTCTAAAGAGTCTCCTCAAAGAACAAGAACTAGCTGGAAGAATGTATGGAGCAGTATGTTCCTCATCAGCAATTCTACTTAAACAGGGCTTACTGGAGGGTAAGAAAGCCATAGCTCATCCTTCCATTGTGCGCAAACCTACAGATGAGTTGGTGAACAACACCAAAGTAGTAATTGATGGTAACCTGATCACAAGCAGTGGACTTGCCACTGTCGCAGAATTTGCATTGGCTATTGTGAGCAAACTGTATGGTCATGCAAGGGCAAGAAGTGTTGCAGAAGGCCTTGTTTATGAGTACCCGAGGACTTAA

Protein Analysis

457

Amino Acids

48.96

Weight (kDa)

8.74

Isoelectric Point (pI)

40.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DJ-1_PfpI PF01965 3 - 94 8.8e-17 DJ-1/PfpI family
DJ-1_PfpI PF01965 134 - 295 2.6e-35 DJ-1/PfpI family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1193
Acc36I ACCTGC 1 cut(s) 760
AccB1I GGYRCC 2 cut(s) 217, 950
AccBSI CCGCTC 2 cut(s) 281, 1042
AciI CCGC 4 cut(s) 274, 281, 883, 1042
AcoI YGGCCR 1 cut(s) 100
AcsI RAATTY 4 cut(s) 135, 387, 1059, 1280
AcuI CTGAAG 3 cut(s) 258, 867, 897
AfaI GTAC 3 cut(s) 178, 453, 1358
AgsI TTSAA 8 cut(s) 51, 164, 329, 626, 784, 794, 857, 920
AjnI CCWGG 2 cut(s) 409, 421
AjuI GAANNNNNNNTTGG 4 cut(s) 31, 63, 687, 719
AloI GAACNNNNNNTCC 2 cut(s) 77, 109
Alw21I GWGCWC 1 cut(s) 642
Alw26I GTCTC 2 cut(s) 634, 1076
AlwNI CAGNNNCTG 1 cut(s) 119
Ama87I CYCGRG 2 cut(s) 816, 1360
AoxI GGCC 5 cut(s) 90, 100, 300, 655, 1342
ApeKI GCWGC 4 cut(s) 113, 188, 512, 986
ApoI RAATTY 4 cut(s) 135, 387, 1059, 1280
AspLEI GCGC 2 cut(s) 682, 1194
AspS9I GGNCC 2 cut(s) 656, 749
AsuC2I CCSGG 2 cut(s) 660, 1020
AsuHPI GGTGA 3 cut(s) 286, 442, 1225
AvaI CYCGRG 2 cut(s) 816, 1360
AvaII GGWCC 1 cut(s) 749
BalI TGGCCA 1 cut(s) 102
BanI GGYRCC 2 cut(s) 217, 950
BbsI GAAGAC 1 cut(s) 536
Bbv12I GWGCWC 1 cut(s) 642
BbvI GCAGC 4 cut(s) 125, 175, 499, 973
BccI CCATC 1 cut(s) 1232
BceAI ACGGC 1 cut(s) 636
BciT130I CCWGG 2 cut(s) 411, 423
BclI TGATCA 3 cut(s) 382, 805, 1248
BcnI CCSGG 2 cut(s) 660, 1020
BcoDI GTCTC 2 cut(s) 634, 1076
BfaI CTAG 4 cut(s) 689, 768, 1056, 1091
BfmI CTRYAG 1 cut(s) 1200
BfuAI ACCTGC 1 cut(s) 760
BglII AGATCT 1 cut(s) 1052
BisI GCNGC 7 cut(s) 114, 189, 275, 513, 884, 987, 1043
BlpI GCTNAGC 2 cut(s) 1038, 1046
BlsI GCNGC 7 cut(s) 115, 190, 276, 514, 885, 988, 1044
BmcAI AGTACT 1 cut(s) 453
Bme1390I CCNGG 4 cut(s) 411, 423, 660, 1020
Bme18I GGWCC 1 cut(s) 749
BmeT110I CYCGRG 2 cut(s) 816, 1360
BmgT120I GGNCC 2 cut(s) 656, 749
BmiI GGNNCC 5 cut(s) 219, 312, 658, 750, 952
BmrFI CCNGG 4 cut(s) 411, 423, 660, 1020
BmsI GCATC 1 cut(s) 950
BpiI GAAGAC 1 cut(s) 536
BpmI CTGGAG 3 cut(s) 501, 654, 1175
Bpu1102I GCTNAGC 2 cut(s) 1038, 1046
BpuEI CTTGAG 2 cut(s) 476, 930
BpuMI CCSGG 2 cut(s) 660, 1020
BsaJI CCNNGG 7 cut(s) 297, 303, 536, 652, 658, 720, 1361
BsaXI ACNNNNNCTCC 3 cut(s) 26, 77, 107
Bse1I ACTGG 2 cut(s) 830, 1158
BseBI CCWGG 2 cut(s) 411, 423
BseDI CCNNGG 7 cut(s) 297, 303, 536, 652, 658, 720, 1361
BseGI GGATG 2 cut(s) 271, 1177
BseMII CTCAG 2 cut(s) 471, 1029
BseNI ACTGG 2 cut(s) 830, 1158
BseRI GAGGAG 3 cut(s) 85, 791, 1064
BseXI GCAGC 4 cut(s) 125, 175, 499, 973
BseYI CCCAGC 1 cut(s) 1031
BsgI GTGCAG 1 cut(s) 950
BshFI GGCC 5 cut(s) 92, 102, 302, 657, 1344
BshNI GGYRCC 2 cut(s) 217, 950
BsiHKAI GWGCWC 1 cut(s) 642
BsiHKCI CYCGRG 2 cut(s) 816, 1360
BsiSI CCGG 2 cut(s) 660, 1019
BslFI GGGAC 4 cut(s) 247, 355, 455, 762
BsmAI GTCTC 2 cut(s) 634, 1076
BsmFI GGGAC 4 cut(s) 247, 355, 455, 762
BsmI GAATGC 2 cut(s) 423, 578
BsnI GGCC 5 cut(s) 92, 102, 302, 657, 1344
BsoBI CYCGRG 2 cut(s) 816, 1360
Bsp1286I GDGCHC 1 cut(s) 642
Bsp143I GATC 6 cut(s) 382, 394, 805, 1008, 1052, 1248
Bsp1720I GCTNAGC 2 cut(s) 1038, 1046
BspACI CCGC 4 cut(s) 274, 281, 883, 1042
BspANI GGCC 5 cut(s) 92, 102, 302, 657, 1344
BspCNI CTCAG 2 cut(s) 472, 1030
BspLI GGNNCC 5 cut(s) 219, 312, 658, 750, 952
BspMI ACCTGC 1 cut(s) 760
BspT107I GGYRCC 2 cut(s) 217, 950
BsrBI CCGCTC 2 cut(s) 281, 1042
BsrI ACTGG 2 cut(s) 830, 1158
BssECI CCNNGG 7 cut(s) 297, 303, 536, 652, 658, 720, 1361
BssMI GATC 6 cut(s) 382, 394, 805, 1008, 1052, 1248
BssT1I CCWWGG 1 cut(s) 720
Bst2UI CCWGG 2 cut(s) 411, 423
Bst4CI ACNGT 5 cut(s) 121, 298, 907, 1273, 1308
Bst6I CTCTTC 1 cut(s) 66
BstAPI GCANNNNNTGC 1 cut(s) 1283
BstC8I GCNNGC 2 cut(s) 279, 888
BstDEI CTNAG 5 cut(s) 345, 480, 548, 1038, 1046
BstDSI CCRYGG 3 cut(s) 297, 536, 652
BstEII GGTNACC 1 cut(s) 1241
BstF5I GGATG 2 cut(s) 271, 1177
BstHHI GCGC 2 cut(s) 682, 1194
BstKTI GATC 6 cut(s) 385, 397, 808, 1011, 1055, 1251
BstMAI GTCTC 2 cut(s) 634, 1076
BstMBI GATC 6 cut(s) 382, 394, 805, 1008, 1052, 1248
BstMWI GCNNNNNNNGC 4 cut(s) 509, 518, 1274, 1283
BstNI CCWGG 2 cut(s) 411, 423
BstPI GGTNACC 1 cut(s) 1241
BstSCI CCNGG 4 cut(s) 409, 421, 658, 1018
BstSFI CTRYAG 1 cut(s) 1200
BstV1I GCAGC 4 cut(s) 125, 175, 499, 973
BstV2I GAAGAC 1 cut(s) 536
BstX2I RGATCY 1 cut(s) 1052
BstXI CCANNNNNNTGG 1 cut(s) 603
BstYI RGATCY 1 cut(s) 1052
BsuRI GGCC 5 cut(s) 92, 102, 302, 657, 1344
BtgI CCRYGG 3 cut(s) 297, 536, 652
BtsCI GGATG 2 cut(s) 271, 1177
BtsI GCAGTG 2 cut(s) 183, 1264
BtsIMutI CAGTG 3 cut(s) 183, 1264, 1269
BveI ACCTGC 1 cut(s) 760
Cac8I GCNNGC 2 cut(s) 279, 888
CaiI CAGNNNCTG 1 cut(s) 119
CfoI GCGC 2 cut(s) 682, 1194
Cfr13I GGNCC 2 cut(s) 656, 749
Csp6I GTAC 3 cut(s) 177, 452, 1357
CviAII CATG 1 cut(s) 1316
CviQI GTAC 3 cut(s) 177, 452, 1357
DdeI CTNAG 5 cut(s) 345, 480, 548, 1038, 1046
DpnI GATC 6 cut(s) 384, 396, 807, 1010, 1054, 1250
DpnII GATC 6 cut(s) 382, 394, 805, 1008, 1052, 1248
EaeI YGGCCR 1 cut(s) 100
Eam1104I CTCTTC 1 cut(s) 66
EarI CTCTTC 1 cut(s) 66
Eco130I CCWWGG 1 cut(s) 720
Eco147I AGGCCT 1 cut(s) 1344
Eco47I GGWCC 1 cut(s) 749
Eco57I CTGAAG 3 cut(s) 258, 867, 897
Eco88I CYCGRG 2 cut(s) 816, 1360
Eco91I GGTNACC 1 cut(s) 1241
EcoO109I RGGNCCY 1 cut(s) 749
EcoO65I GGTNACC 1 cut(s) 1241
EcoRI GAATTC 1 cut(s) 1059
EcoRII CCWGG 2 cut(s) 409, 421
EcoT14I CCWWGG 1 cut(s) 720
ErhI CCWWGG 1 cut(s) 720
FaeI CATG 1 cut(s) 1319
FaqI GGGAC 4 cut(s) 247, 355, 455, 762
FatI CATG 1 cut(s) 1315
FauI CCCGC 1 cut(s) 274
FbaI TGATCA 3 cut(s) 382, 805, 1248
Fnu4HI GCNGC 7 cut(s) 114, 189, 275, 513, 884, 987, 1043
FokI GGATG 2 cut(s) 278, 1164
Fsp4HI GCNGC 7 cut(s) 114, 189, 275, 513, 884, 987, 1043
FspBI CTAG 4 cut(s) 689, 768, 1056, 1091
FspI TGCGCA 1 cut(s) 1193
GlaI GCGC 2 cut(s) 681, 1193
GluI GCNGC 7 cut(s) 114, 189, 275, 513, 884, 987, 1043
GsaI CCCAGC 1 cut(s) 1035
GsuI CTGGAG 3 cut(s) 501, 654, 1175
HaeIII GGCC 5 cut(s) 92, 102, 302, 657, 1344
HapII CCGG 2 cut(s) 660, 1019
HhaI GCGC 2 cut(s) 682, 1194
Hin1II CATG 1 cut(s) 1319
Hin6I GCGC 2 cut(s) 680, 1192
HinP1I GCGC 2 cut(s) 680, 1192
HincII GTYRAC 1 cut(s) 996
HindII GTYRAC 1 cut(s) 996
HindIII AAGCTT 2 cut(s) 41, 330
HinfI GANTC 4 cut(s) 5, 710, 764, 1069
HpaII CCGG 2 cut(s) 660, 1019
HphI GGTGA 3 cut(s) 286, 442, 1225
Hpy166II GTNNAC 4 cut(s) 898, 996, 1216, 1262
Hpy188I TCNGA 3 cut(s) 133, 382, 847
Hpy188III TCNNGA 4 cut(s) 82, 633, 768, 1056
Hpy8I GTNNAC 4 cut(s) 898, 996, 1216, 1262
HpyAV CCTTC 5 cut(s) 37, 202, 610, 1191, 1334
HpyCH4III ACNGT 5 cut(s) 121, 298, 907, 1273, 1308
HpyCH4IV ACGT 1 cut(s) 87
HpyCH4V TGCA 7 cut(s) 113, 578, 836, 931, 1286, 1319, 1337
HpyF10VI GCNNNNNNNGC 4 cut(s) 509, 518, 1274, 1283
HpyF3I CTNAG 5 cut(s) 345, 480, 548, 1038, 1046
HpySE526I ACGT 1 cut(s) 87
Hsp92II CATG 1 cut(s) 1319
HspAI GCGC 2 cut(s) 680, 1192
Ksp22I TGATCA 3 cut(s) 382, 805, 1248
Kzo9I GATC 6 cut(s) 382, 394, 805, 1008, 1052, 1248
LmnI GCTCC 5 cut(s) 310, 324, 500, 520, 1109
Lsp1109I GCAGC 4 cut(s) 125, 175, 499, 973
LweI GCATC 1 cut(s) 950
MaeI CTAG 4 cut(s) 689, 768, 1056, 1091
MaeII ACGT 1 cut(s) 87
MaeIII GTNAC 4 cut(s) 292, 523, 862, 1241
MalI GATC 6 cut(s) 384, 396, 807, 1010, 1054, 1250
MbiI CCGCTC 2 cut(s) 281, 1042
MboI GATC 6 cut(s) 382, 394, 805, 1008, 1052, 1248
MboII GAAGA 5 cut(s) 53, 60, 251, 536, 1110
MflI RGATCY 1 cut(s) 1052
MhlI GDGCHC 1 cut(s) 642
MlsI TGGCCA 1 cut(s) 102
MluNI TGGCCA 1 cut(s) 102
MlyI GAGTC 2 cut(s) 14, 1078
Mox20I TGGCCA 1 cut(s) 102
MscI TGGCCA 1 cut(s) 102
MseI TTAA 4 cut(s) 437, 974, 1140, 1369
Msp20I TGGCCA 1 cut(s) 102
MspI CCGG 2 cut(s) 660, 1019
MspR9I CCNGG 4 cut(s) 411, 423, 660, 1020
Mva1269I GAATGC 2 cut(s) 423, 578
MvaI CCWGG 2 cut(s) 411, 423
MwoI GCNNNNNNNGC 4 cut(s) 509, 518, 1274, 1283
NciI CCSGG 2 cut(s) 660, 1020
NdeII GATC 6 cut(s) 382, 394, 805, 1008, 1052, 1248
NlaIII CATG 1 cut(s) 1319
NlaIV GGNNCC 5 cut(s) 219, 312, 658, 750, 952
NmuCI GTSAC 2 cut(s) 292, 862
NsbI TGCGCA 1 cut(s) 1193
PaeR7I CTCGAG 1 cut(s) 816
PceI AGGCCT 1 cut(s) 1344
PctI GAATGC 2 cut(s) 423, 578
PfeI GAWTC 2 cut(s) 710, 764
PkrI GCNGC 7 cut(s) 115, 190, 276, 514, 885, 988, 1044
PleI GAGTC 2 cut(s) 13, 1077
PpsI GAGTC 2 cut(s) 13, 1077
PpuMI RGGWCCY 1 cut(s) 749
Psp5II RGGWCCY 1 cut(s) 749
Psp6I CCWGG 2 cut(s) 409, 421
PspEI GGTNACC 1 cut(s) 1241
PspFI CCCAGC 1 cut(s) 1031
PspGI CCWGG 2 cut(s) 409, 421
PspN4I GGNNCC 5 cut(s) 219, 312, 658, 750, 952
PspPI GGNCC 2 cut(s) 656, 749
PspPPI RGGWCCY 1 cut(s) 749
PspXI VCTCGAGB 1 cut(s) 816
PstNI CAGNNNCTG 1 cut(s) 119
PsuI RGATCY 1 cut(s) 1052
RsaI GTAC 3 cut(s) 178, 453, 1358
RsaNI GTAC 3 cut(s) 177, 452, 1357
SaqAI TTAA 4 cut(s) 437, 974, 1140, 1369
SatI GCNGC 7 cut(s) 114, 189, 275, 513, 884, 987, 1043
Sau3AI GATC 6 cut(s) 382, 394, 805, 1008, 1052, 1248
Sau96I GGNCC 2 cut(s) 656, 749
ScaI AGTACT 1 cut(s) 453
SchI GAGTC 2 cut(s) 14, 1078
ScrFI CCNGG 4 cut(s) 411, 423, 660, 1020
SduI GDGCHC 1 cut(s) 642
SfaNI GCATC 1 cut(s) 950
SfcI CTRYAG 1 cut(s) 1200
Sfr274I CTCGAG 1 cut(s) 816
SinI GGWCC 1 cut(s) 749
SlaI CTCGAG 1 cut(s) 816
SmlI CTYRAG 3 cut(s) 455, 816, 945
SmoI CTYRAG 3 cut(s) 455, 816, 945
SseBI AGGCCT 1 cut(s) 1344
SsiI CCGC 4 cut(s) 274, 281, 883, 1042
SspMI CTAG 4 cut(s) 689, 768, 1056, 1091
StuI AGGCCT 1 cut(s) 1344
StyD4I CCNGG 4 cut(s) 409, 421, 658, 1018
StyI CCWWGG 1 cut(s) 720
TaaI ACNGT 5 cut(s) 121, 298, 907, 1273, 1308
TaiI ACGT 1 cut(s) 90
TaqI TCGA 1 cut(s) 817
TatI WGTACW 1 cut(s) 451
TauI GCSGC 3 cut(s) 277, 886, 1045
TfiI GAWTC 2 cut(s) 710, 764
Tru1I TTAA 4 cut(s) 437, 974, 1140, 1369
Tru9I TTAA 4 cut(s) 437, 974, 1140, 1369
TscAI CASTG 3 cut(s) 190, 1264, 1276
TseFI GTSAC 2 cut(s) 292, 862
TseI GCWGC 4 cut(s) 113, 188, 512, 986
Tsp45I GTSAC 2 cut(s) 292, 862
TspDTI ATGAA 2 cut(s) 53, 777
TspGWI ACGGA 1 cut(s) 65
TspRI CASTG 3 cut(s) 190, 1264, 1276
VpaK11BI GGWCC 1 cut(s) 749
XapI RAATTY 4 cut(s) 135, 387, 1059, 1280
XbaI TCTAGA 2 cut(s) 767, 1055
XcmI CCANNNNNNNNNTGG 1 cut(s) 211
XhoI CTCGAG 1 cut(s) 816
XspI CTAG 4 cut(s) 689, 768, 1056, 1091
ZrmI AGTACT 1 cut(s) 453
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.