Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8413389.1

Orthogroup ID

OG0005848

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1356

Gene Structure 1356 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8413389.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

gaagttcttcagaaaattacaagacaacaggctgaggaaaggaggttatatggagctatatgtgctgctccagcagtaacacttctaccgtggggtcttctaaggagaaaggagacaacttgccaccctgcattcttcgacaagctaccaaccttctgggccgtcaaatcaaacattcaagtttctggagtactcacaacaagccgtggccctggaacttgttttgtttttgccctgtgcctagtggaacagctatttggggaatctgtcgccaaggaaattggagagttgctgttggtgggtcctgctgatgatggatctagaaaggaggagttcaacaaaatggaatggtcttttgatcacatccctcga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009536 GO:0009657 GO:0009658 GO:0009987 GO:0016043 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DJ-1_PfpI

Protein Analysis

124

Amino Acids

13.91

Weight (kDa)

7.0

Isoelectric Point (pI)

54.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005848)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34020 AT4G34020 AT4G34020 AT4G34020
fragaria_vesca	FvH4_2g05880 FvH4_2g05880 FvH4_2g05880 FvH4_2g05880 FvH4_2g05880 FvH4_2g05880
malus_domestica	MD05G1082200.v1.1
prunus_persica	Prupe.8G126700_v2.0.a1 Prupe.8G126700_v2.0.a1
pyrus_communis	pycom03g18750 pycom05g07700
rosa_chinensis	RchiOBHm_Chr6g0257661
rosa_laevigata	RLG00000014715
rosa_multiflora	Rmu_co8071652.1_g000001 Rmu_co8413389.1_g000001 Rmu_sc0026590.1_g000001
rosa_rugosa	Rorug05G0569400 Rorug05G0569500 Rorug05G0569600
rosa_samantha	Rh6AG086100 Rh6BG080200 Rh6CG075200 Rh6DG072100
rosa_wichuraiana	Rw6G007710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	325
AfaI	GTAC	1 cut(s)	192
AgsI	TTSAA	2 cut(s)	179, 337
AjnI	CCWGG	1 cut(s)	211
AjuI	GAANNNNNNNTTGG	2 cut(s)	240, 272
AluBI	AGCT	3 cut(s)	56, 145, 253
AluI	AGCT	3 cut(s)	56, 145, 253
Alw26I	GTCTC	1 cut(s)	107
AlwI	GGATC	1 cut(s)	325
AoxI	GGCC	2 cut(s)	159, 208
ApeKI	GCWGC	1 cut(s)	65
Asp700I	GAANNNNTTC	1 cut(s)	6
AspS9I	GGNCC	3 cut(s)	159, 209, 302
AvaII	GGWCC	1 cut(s)	302
BbsI	GAAGAC	1 cut(s)	89
BbvCI	CCTCAGC	1 cut(s)	33
BbvI	GCAGC	1 cut(s)	52
BccI	CCATC	1 cut(s)	308
BceAI	ACGGC	2 cut(s)	146, 189
BciT130I	CCWGG	1 cut(s)	213
BclI	TGATCA	1 cut(s)	358
BcoDI	GTCTC	1 cut(s)	107
BfaI	CTAG	2 cut(s)	242, 321
BisI	GCNGC	1 cut(s)	66
BlsI	GCNGC	1 cut(s)	67
BmcAI	AGTACT	1 cut(s)	192
Bme1390I	CCNGG	1 cut(s)	213
Bme18I	GGWCC	1 cut(s)	302
BmgT120I	GGNCC	3 cut(s)	159, 209, 302
BmiI	GGNNCC	1 cut(s)	303
BmrFI	CCNGG	1 cut(s)	213
BpiI	GAAGAC	1 cut(s)	89
BpmI	CTGGAG	2 cut(s)	54, 207
Bpu10I	CCTNAGC	1 cut(s)	33
BsaJI	CCNNGG	4 cut(s)	89, 205, 211, 273
BseBI	CCWGG	1 cut(s)	213
BseDI	CCNNGG	4 cut(s)	89, 205, 211, 273
BseGI	GGATG	1 cut(s)	363
BseMII	CTCAG	1 cut(s)	24
BseRI	GAGGAG	1 cut(s)	344
BseXI	GCAGC	1 cut(s)	52
BshFI	GGCC	2 cut(s)	161, 210
BsmAI	GTCTC	1 cut(s)	107
BsmI	GAATGC	1 cut(s)	131
BsnI	GGCC	2 cut(s)	161, 210
Bsp143I	GATC	2 cut(s)	317, 358
BspANI	GGCC	2 cut(s)	161, 210
BspCNI	CTCAG	1 cut(s)	25
BspLI	GGNNCC	1 cut(s)	303
BspPI	GGATC	1 cut(s)	325
BssECI	CCNNGG	4 cut(s)	89, 205, 211, 273
BssMI	GATC	2 cut(s)	317, 358
BssT1I	CCWWGG	1 cut(s)	273
Bst2UI	CCWGG	1 cut(s)	213
Bst4CI	ACNGT	1 cut(s)	90
BstDEI	CTNAG	2 cut(s)	33, 101
BstDSI	CCRYGG	2 cut(s)	89, 205
BstF5I	GGATG	1 cut(s)	363
BstKTI	GATC	2 cut(s)	320, 361
BstMAI	GTCTC	1 cut(s)	107
BstMBI	GATC	2 cut(s)	317, 358
BstMWI	GCNNNNNNNGC	2 cut(s)	62, 71
BstNI	CCWGG	1 cut(s)	213
BstSCI	CCNGG	1 cut(s)	211
BstV1I	GCAGC	1 cut(s)	52
BstV2I	GAAGAC	1 cut(s)	89
BstX2I	RGATCY	1 cut(s)	317
BstXI	CCANNNNNNTGG	1 cut(s)	156
BstYI	RGATCY	1 cut(s)	317
BsuRI	GGCC	2 cut(s)	161, 210
BtgI	CCRYGG	2 cut(s)	89, 205
BtsCI	GGATG	1 cut(s)	363
Cfr13I	GGNCC	3 cut(s)	159, 209, 302
Csp6I	GTAC	1 cut(s)	191
CviJI	RGCY	7 cut(s)	32, 56, 145, 161, 204, 210, 253
CviKI_1	RGCY	7 cut(s)	32, 56, 145, 161, 204, 210, 253
CviQI	GTAC	1 cut(s)	191
DdeI	CTNAG	2 cut(s)	33, 101
DpnI	GATC	2 cut(s)	319, 360
DpnII	GATC	2 cut(s)	317, 358
Eco130I	CCWWGG	1 cut(s)	273
Eco47I	GGWCC	1 cut(s)	302
EcoO109I	RGGNCCY	1 cut(s)	302
EcoRII	CCWGG	1 cut(s)	211
EcoT14I	CCWWGG	1 cut(s)	273
ErhI	CCWWGG	1 cut(s)	273
FaiI	YATR	4 cut(s)	49, 51, 59, 61
FbaI	TGATCA	1 cut(s)	358
Fnu4HI	GCNGC	1 cut(s)	66
FokI	GGATG	1 cut(s)	350
Fsp4HI	GCNGC	1 cut(s)	66
FspBI	CTAG	2 cut(s)	242, 321
GluI	GCNGC	1 cut(s)	66
GsuI	CTGGAG	2 cut(s)	54, 207
HaeIII	GGCC	2 cut(s)	161, 210
HinfI	GANTC	1 cut(s)	263
Hpy188I	TCNGA	1 cut(s)	12
Hpy188III	TCNNGA	2 cut(s)	186, 321
HpyAV	CCTTC	1 cut(s)	163
HpyCH4III	ACNGT	1 cut(s)	90
HpyCH4V	TGCA	1 cut(s)	131
HpyF10VI	GCNNNNNNNGC	2 cut(s)	62, 71
HpyF3I	CTNAG	2 cut(s)	33, 101
Ksp22I	TGATCA	1 cut(s)	358
Kzo9I	GATC	2 cut(s)	317, 358
LmnI	GCTCC	2 cut(s)	53, 73
LpnPI	CCDG	9 cut(s)	14, 84, 141, 142, 171, 198, 225, 248, 318
Lsp1109I	GCAGC	1 cut(s)	52
MaeI	CTAG	2 cut(s)	242, 321
MaeIII	GTNAC	1 cut(s)	76
MalI	GATC	2 cut(s)	319, 360
MboI	GATC	2 cut(s)	317, 358
MboII	GAAGA	2 cut(s)	89, 127
MflI	RGATCY	1 cut(s)	317
MluCI	AATT	2 cut(s)	15, 279
MnlI	CCTC	3 cut(s)	28, 36, 322
MroXI	GAANNNNTTC	1 cut(s)	6
MspR9I	CCNGG	1 cut(s)	213
Mva1269I	GAATGC	1 cut(s)	131
MvaI	CCWGG	1 cut(s)	213
MwoI	GCNNNNNNNGC	2 cut(s)	62, 71
NdeII	GATC	2 cut(s)	317, 358
NlaIV	GGNNCC	1 cut(s)	303
PctI	GAATGC	1 cut(s)	131
PdmI	GAANNNNTTC	1 cut(s)	6
PfeI	GAWTC	1 cut(s)	263
PkrI	GCNGC	1 cut(s)	67
PpuMI	RGGWCCY	1 cut(s)	302
Psp5II	RGGWCCY	1 cut(s)	302
Psp6I	CCWGG	1 cut(s)	211
PspGI	CCWGG	1 cut(s)	211
PspN4I	GGNNCC	1 cut(s)	303
PspPI	GGNCC	3 cut(s)	159, 209, 302
PspPPI	RGGWCCY	1 cut(s)	302
PsuI	RGATCY	1 cut(s)	317
RsaI	GTAC	1 cut(s)	192
RsaNI	GTAC	1 cut(s)	191
SatI	GCNGC	1 cut(s)	66
Sau3AI	GATC	2 cut(s)	317, 358
Sau96I	GGNCC	3 cut(s)	159, 209, 302
ScaI	AGTACT	1 cut(s)	192
ScrFI	CCNGG	1 cut(s)	213
SetI	ASST	5 cut(s)	47, 58, 147, 155, 255
SinI	GGWCC	1 cut(s)	302
Sse9I	AATT	2 cut(s)	15, 279
SspMI	CTAG	2 cut(s)	242, 321
StyD4I	CCNGG	1 cut(s)	211
StyI	CCWWGG	1 cut(s)	273
TaaI	ACNGT	1 cut(s)	90
TaqI	TCGA	2 cut(s)	138, 370
TasI	AATT	2 cut(s)	15, 279
TatI	WGTACW	1 cut(s)	190
TfiI	GAWTC	1 cut(s)	263
TseI	GCWGC	1 cut(s)	65
VpaK11BI	GGWCC	1 cut(s)	302
XbaI	TCTAGA	1 cut(s)	320
XmnI	GAANNNNTTC	1 cut(s)	6
XspI	CTAG	2 cut(s)	242, 321
ZrmI	AGTACT	1 cut(s)	192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.