RLG00000014715

DJ-1/PfpI family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
Physical Location & Seq
Reverse (-)
56761883 .. 56764849
2967 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000014715

Sequence Viewer

Length: 1404 bp
ATGGAGTCTCTGTGTTCAGTTCTCTTACCAACAACGACGGTGAAATTCTCTTACCCAAATCTTACTTCAATGGCTACTGTTGCTTCTTTCTCAATCAAGAACGTGGCCTCTGGCCAGCGAAGAGCAGTAGCTACTGTAAAACCCACTGAAGACCCAGCTAAAACCCTCTACCCAATTCCACCGGCAAACCCAGTTTCTAGTTTAAAGAGTACAAGCACTGCTGCTTCTTTGCCTACCAAGAAGGTTCTGGTTCCGATTGGGTTTGGGACTGAAGAAATGGAGGCTGTGATTATGGTGGATGTTCTGCGCCGAGCTGGTGCTGATGTCATTGTGGCCTCGGTGGAGCCACAGCTCCAGATTGAAGCTTCTTGTGGGACCAAGTTGGTTGCTGATACCTCCATTTCCTCCTGTTCTGATCAAATTTTTGATCTTGTGGCTTTACCGGGAGGAATGCCTGGTTCGGTGAGGTTAAGAGACTGCGAAGTTCTTCAGAAAATTACAAGACAACAGGCTGAGGAAAGGAGGTTATATGGAGCTATATGTGCTGCTCCAGCAGTAACACTTCTACCATGGGGTCTTCTAAGGAGAAAGCAGACAACTTGCCACCCTGCATTCTTTGACAAGCTACCAACCTTCTGGGCAGTCAAATCAAACATTCAAGTTTCTGGAGTACTCACAACAAGCCGTGGCCCTGGAACTTGTTTTGTTTTTGCCCTGTGCCTAGTGGAACAGCTATTTGGGGAATCTGTCGCCAAGGAAATTGGAGAGTTGCTGTTGGTGGGTCCTGCTGATGATGAATCTAGAAAGGAGGAGTTCAACAAAGTTGAATGGTCTTTTGATCACATCCCTCGAGTTCTCATTCCAGTTGCAAATGGTTCTGAAGAGATTGAAGTAGTGACTATTGTAGATATTCTGCGGAGAGCAAAGGTGGACATAACTGTTGCTTCAGTTGAAAAATCTGTGCAGATTTTGGCATCTCAAGGCACCAAAATCATAGCTGACAAGTTAATTGGTGTTGCTGCCAAGTCAACATATGATTTAATCATTCTTCCGGGAGGAAATGCTGGGGCTGAGCGGCTGAGCAAATCTAGAATTCTAAAGAGTCTCCTCAAAGAACAAGAACTAGCGGGAAGAATATATGGAGCAGTCTGTTCCTCATCAGCAATTCTACTTAAGCAGGGCTTACTGCAGGGTAAGAAAGCCACTGCCCATCCTTCCATTGCGAGCAAACCTACAGATGAGTTGGTGAACAACACCAAAGTAGTAATTGATGGTAACCTGATCACAAGCAGGGGACTTGCTACTGTTGCAGAATTTGCATTGGCTATTGTGAGCAAACTATATGGTCATGCGAGGGCAAGAAGTGTTGCAGAAGGCCTTGTTTATGAGTACCCGAAAACTTAG

Protein Analysis

468

Amino Acids

49.94

Weight (kDa)

8.72

Isoelectric Point (pI)

42.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DJ-1_PfpI PF01965 80 - 244 1.1e-38 DJ-1/PfpI family
DJ-1_PfpI PF01965 284 - 445 1.6e-38 DJ-1/PfpI family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 983
AccBSI CCGCTC 1 cut(s) 1075
AciI CCGC 3 cut(s) 916, 1075, 1127
AcoI YGGCCR 1 cut(s) 112
AcsI RAATTY 4 cut(s) 44, 420, 1092, 1313
AcuI CTGAAG 5 cut(s) 168, 291, 473, 900, 930
AfaI GTAC 3 cut(s) 211, 672, 1391
AflII CTTAAG 1 cut(s) 1172
AgsI TTSAA 7 cut(s) 69, 362, 659, 817, 827, 890, 953
AjnI CCWGG 2 cut(s) 454, 691
AjuI GAANNNNNNNTTGG 4 cut(s) 49, 81, 720, 752
AluBI AGCT 9 cut(s) 131, 158, 314, 352, 365, 536, 625, 733, 998
AluI AGCT 9 cut(s) 131, 158, 314, 352, 365, 536, 625, 733, 998
Alw26I GTCTC 3 cut(s) 12, 468, 1109
Ama87I CYCGRG 1 cut(s) 849
AoxI GGCC 5 cut(s) 105, 112, 333, 688, 1375
ApeKI GCWGC 3 cut(s) 221, 545, 1019
ApoI RAATTY 4 cut(s) 44, 420, 1092, 1313
Asp700I GAANNNNTTC 1 cut(s) 486
AspLEI GCGC 1 cut(s) 309
AspS9I GGNCC 3 cut(s) 375, 689, 782
AsuC2I CCSGG 2 cut(s) 444, 1053
AsuHPI GGTGA 3 cut(s) 52, 475, 1258
AvaI CYCGRG 1 cut(s) 849
AvaII GGWCC 2 cut(s) 375, 782
BalI TGGCCA 1 cut(s) 114
BanI GGYRCC 1 cut(s) 983
BbsI GAAGAC 2 cut(s) 156, 569
BbvCI CCTCAGC 1 cut(s) 513
BbvI GCAGC 3 cut(s) 208, 532, 1006
BccI CCATC 2 cut(s) 1218, 1265
BceAI ACGGC 1 cut(s) 669
BciT130I CCWGG 2 cut(s) 456, 693
BclI TGATCA 3 cut(s) 415, 838, 1281
BcnI CCSGG 2 cut(s) 444, 1053
BcoDI GTCTC 3 cut(s) 12, 468, 1109
BfaI CTAG 5 cut(s) 198, 722, 801, 1089, 1124
BfmI CTRYAG 2 cut(s) 1187, 1233
BfrI CTTAAG 1 cut(s) 1172
BisI GCNGC 4 cut(s) 222, 546, 1020, 1076
BlpI GCTNAGC 2 cut(s) 1071, 1079
BlsI GCNGC 4 cut(s) 223, 547, 1021, 1077
BmcAI AGTACT 1 cut(s) 672
Bme1390I CCNGG 4 cut(s) 444, 456, 693, 1053
Bme18I GGWCC 2 cut(s) 375, 782
BmeT110I CYCGRG 1 cut(s) 849
BmgT120I GGNCC 3 cut(s) 375, 689, 782
BmiI GGNNCC 5 cut(s) 252, 345, 376, 783, 985
BmrFI CCNGG 4 cut(s) 444, 456, 693, 1053
BmrI ACTGGG 1 cut(s) 185
BmsI GCATC 1 cut(s) 983
BmuI ACTGGG 1 cut(s) 185
BpiI GAAGAC 2 cut(s) 156, 569
BpmI CTGGAG 3 cut(s) 338, 534, 687
Bpu10I CCTNAGC 1 cut(s) 513
Bpu1102I GCTNAGC 2 cut(s) 1071, 1079
BpuEI CTTGAG 1 cut(s) 963
BpuMI CCSGG 2 cut(s) 444, 1053
BsaJI CCNNGG 5 cut(s) 336, 569, 685, 691, 753
BsaXI ACNNNNNCTCC 1 cut(s) 26
Bse118I RCCGGY 1 cut(s) 181
Bse1I ACTGG 2 cut(s) 191, 863
Bse3DI GCAATG 1 cut(s) 1218
BseBI CCWGG 2 cut(s) 456, 693
BseDI CCNNGG 5 cut(s) 336, 569, 685, 691, 753
BseGI GGATG 3 cut(s) 304, 843, 1210
BseMI GCAATG 1 cut(s) 1218
BseMII CTCAG 3 cut(s) 504, 1062, 1070
BseNI ACTGG 2 cut(s) 191, 863
BseRI GAGGAG 2 cut(s) 824, 1097
BseXI GCAGC 3 cut(s) 208, 532, 1006
BseYI CCCAGC 2 cut(s) 154, 1064
BsgI GTGCAG 1 cut(s) 983
BshFI GGCC 5 cut(s) 107, 114, 335, 690, 1377
BshNI GGYRCC 1 cut(s) 983
BsiHKCI CYCGRG 1 cut(s) 849
BsiSI CCGG 3 cut(s) 182, 443, 1052
BslFI GGGAC 3 cut(s) 280, 388, 1308
BsmAI GTCTC 3 cut(s) 12, 468, 1109
BsmFI GGGAC 3 cut(s) 280, 388, 1308
BsmI GAATGC 2 cut(s) 456, 611
BsnI GGCC 5 cut(s) 107, 114, 335, 690, 1377
BsoBI CYCGRG 1 cut(s) 849
Bsp143I GATC 4 cut(s) 415, 427, 838, 1281
Bsp1720I GCTNAGC 2 cut(s) 1071, 1079
Bsp19I CCATGG 1 cut(s) 569
BspACI CCGC 3 cut(s) 916, 1075, 1127
BspANI GGCC 5 cut(s) 107, 114, 335, 690, 1377
BspCNI CTCAG 3 cut(s) 505, 1063, 1071
BspLI GGNNCC 5 cut(s) 252, 345, 376, 783, 985
BspMAI CTGCAG 1 cut(s) 1191
BspQI GCTCTTC 1 cut(s) 115
BspT107I GGYRCC 1 cut(s) 983
BspTI CTTAAG 1 cut(s) 1172
BsrBI CCGCTC 1 cut(s) 1075
BsrDI GCAATG 1 cut(s) 1218
BsrFI RCCGGY 1 cut(s) 181
BsrI ACTGG 2 cut(s) 191, 863
BssAI RCCGGY 1 cut(s) 181
BssECI CCNNGG 5 cut(s) 336, 569, 685, 691, 753
BssMI GATC 4 cut(s) 415, 427, 838, 1281
BssT1I CCWWGG 2 cut(s) 569, 753
Bst2UI CCWGG 2 cut(s) 456, 693
Bst4CI ACNGT 5 cut(s) 40, 79, 136, 940, 1306
Bst6I CTCTTC 2 cut(s) 115, 876
BstAFI CTTAAG 1 cut(s) 1172
BstAPI GCANNNNNTGC 1 cut(s) 1316
BstC8I GCNNGC 2 cut(s) 116, 1225
BstDEI CTNAG 5 cut(s) 513, 581, 1071, 1079, 1401
BstDSI CCRYGG 2 cut(s) 569, 685
BstEII GGTNACC 1 cut(s) 1274
BstF5I GGATG 3 cut(s) 304, 843, 1210
BstHHI GCGC 1 cut(s) 309
BstKTI GATC 4 cut(s) 418, 430, 841, 1284
BstMAI GTCTC 3 cut(s) 12, 468, 1109
BstMBI GATC 4 cut(s) 415, 427, 838, 1281
BstMWI GCNNNNNNNGC 5 cut(s) 80, 542, 551, 1307, 1316
BstNI CCWGG 2 cut(s) 456, 693
BstPI GGTNACC 1 cut(s) 1274
BstSCI CCNGG 4 cut(s) 442, 454, 691, 1051
BstSFI CTRYAG 2 cut(s) 1187, 1233
BstV1I GCAGC 3 cut(s) 208, 532, 1006
BstV2I GAAGAC 2 cut(s) 156, 569
BstXI CCANNNNNNTGG 1 cut(s) 636
BsuRI GGCC 5 cut(s) 107, 114, 335, 690, 1377
BtgI CCRYGG 2 cut(s) 569, 685
BtsCI GGATG 3 cut(s) 304, 843, 1210
BtsI GCAGTG 2 cut(s) 216, 1203
BtsIMutI CAGTG 3 cut(s) 144, 216, 1203
Cac8I GCNNGC 2 cut(s) 116, 1225
CfoI GCGC 1 cut(s) 309
Cfr10I RCCGGY 1 cut(s) 181
Cfr13I GGNCC 3 cut(s) 375, 689, 782
Csp6I GTAC 3 cut(s) 210, 671, 1390
CviAII CATG 2 cut(s) 570, 1349
CviQI GTAC 3 cut(s) 210, 671, 1390
DdeI CTNAG 5 cut(s) 513, 581, 1071, 1079, 1401
DpnI GATC 4 cut(s) 417, 429, 840, 1283
DpnII GATC 4 cut(s) 415, 427, 838, 1281
DraI TTTAAA 1 cut(s) 204
EaeI YGGCCR 1 cut(s) 112
Eam1104I CTCTTC 2 cut(s) 115, 876
EarI CTCTTC 2 cut(s) 115, 876
Eco130I CCWWGG 2 cut(s) 569, 753
Eco147I AGGCCT 1 cut(s) 1377
Eco47I GGWCC 2 cut(s) 375, 782
Eco57I CTGAAG 5 cut(s) 168, 291, 473, 900, 930
Eco88I CYCGRG 1 cut(s) 849
Eco91I GGTNACC 1 cut(s) 1274
EcoO109I RGGNCCY 1 cut(s) 782
EcoO65I GGTNACC 1 cut(s) 1274
EcoRI GAATTC 1 cut(s) 1092
EcoRII CCWGG 2 cut(s) 454, 691
EcoT14I CCWWGG 2 cut(s) 569, 753
ErhI CCWWGG 2 cut(s) 569, 753
FaeI CATG 2 cut(s) 573, 1352
FalI AAGNNNNNCTT 2 cut(s) 1166, 1198
FaqI GGGAC 3 cut(s) 280, 388, 1308
FatI CATG 2 cut(s) 569, 1348
FauI CCCGC 1 cut(s) 1120
FauNDI CATATG 1 cut(s) 1033
FbaI TGATCA 3 cut(s) 415, 838, 1281
Fnu4HI GCNGC 4 cut(s) 222, 546, 1020, 1076
FokI GGATG 3 cut(s) 311, 830, 1197
Fsp4HI GCNGC 4 cut(s) 222, 546, 1020, 1076
FspBI CTAG 5 cut(s) 198, 722, 801, 1089, 1124
GlaI GCGC 1 cut(s) 308
GluI GCNGC 4 cut(s) 222, 546, 1020, 1076
GsaI CCCAGC 2 cut(s) 158, 1068
GsuI CTGGAG 3 cut(s) 338, 534, 687
HaeIII GGCC 5 cut(s) 107, 114, 335, 690, 1377
HapII CCGG 3 cut(s) 182, 443, 1052
HhaI GCGC 1 cut(s) 309
Hin1II CATG 2 cut(s) 573, 1352
Hin6I GCGC 1 cut(s) 307
HinP1I GCGC 1 cut(s) 307
HincII GTYRAC 1 cut(s) 1029
HindII GTYRAC 1 cut(s) 1029
HindIII AAGCTT 1 cut(s) 363
HinfI GANTC 4 cut(s) 5, 743, 797, 1102
HpaII CCGG 3 cut(s) 182, 443, 1052
HphI GGTGA 3 cut(s) 52, 475, 1258
Hpy166II GTNNAC 3 cut(s) 931, 1029, 1249
Hpy188I TCNGA 4 cut(s) 255, 415, 492, 880
Hpy188III TCNNGA 5 cut(s) 97, 355, 666, 801, 1089
Hpy8I GTNNAC 3 cut(s) 931, 1029, 1249
Hpy99I CGWCG 1 cut(s) 40
HpyAV CCTTC 4 cut(s) 235, 643, 1224, 1367
HpyCH4III ACNGT 5 cut(s) 40, 79, 136, 940, 1306
HpyCH4IV ACGT 1 cut(s) 102
HpyCH4V TGCA 7 cut(s) 611, 869, 964, 1189, 1310, 1319, 1370
HpyF10VI GCNNNNNNNGC 5 cut(s) 80, 542, 551, 1307, 1316
HpyF3I CTNAG 5 cut(s) 513, 581, 1071, 1079, 1401
HpySE526I ACGT 1 cut(s) 102
Hsp92II CATG 2 cut(s) 573, 1352
HspAI GCGC 1 cut(s) 307
Ksp22I TGATCA 3 cut(s) 415, 838, 1281
Kzo9I GATC 4 cut(s) 415, 427, 838, 1281
LguI GCTCTTC 1 cut(s) 115
LmnI GCTCC 5 cut(s) 343, 357, 533, 553, 1142
Lsp1109I GCAGC 3 cut(s) 208, 532, 1006
LweI GCATC 1 cut(s) 983
MaeI CTAG 5 cut(s) 198, 722, 801, 1089, 1124
MaeII ACGT 1 cut(s) 102
MaeIII GTNAC 3 cut(s) 556, 895, 1274
MalI GATC 4 cut(s) 417, 429, 840, 1283
MbiI CCGCTC 1 cut(s) 1075
MboI GATC 4 cut(s) 415, 427, 838, 1281
MboII GAAGA 8 cut(s) 132, 161, 284, 479, 569, 893, 1040, 1143
MlsI TGGCCA 1 cut(s) 114
MluNI TGGCCA 1 cut(s) 114
MlyI GAGTC 2 cut(s) 14, 1111
Mox20I TGGCCA 1 cut(s) 114
MroXI GAANNNNTTC 1 cut(s) 486
MscI TGGCCA 1 cut(s) 114
MseI TTAA 5 cut(s) 203, 470, 1007, 1040, 1173
Msp20I TGGCCA 1 cut(s) 114
MspCI CTTAAG 1 cut(s) 1172
MspI CCGG 3 cut(s) 182, 443, 1052
MspR9I CCNGG 4 cut(s) 444, 456, 693, 1053
Mva1269I GAATGC 2 cut(s) 456, 611
MvaI CCWGG 2 cut(s) 456, 693
MwoI GCNNNNNNNGC 5 cut(s) 80, 542, 551, 1307, 1316
NciI CCSGG 2 cut(s) 444, 1053
NcoI CCATGG 1 cut(s) 569
NdeI CATATG 1 cut(s) 1033
NdeII GATC 4 cut(s) 415, 427, 838, 1281
NlaIII CATG 2 cut(s) 573, 1352
NlaIV GGNNCC 5 cut(s) 252, 345, 376, 783, 985
NmeAIII GCCGAG 1 cut(s) 335
NmuCI GTSAC 1 cut(s) 895
PaeR7I CTCGAG 1 cut(s) 849
PceI AGGCCT 1 cut(s) 1377
PciSI GCTCTTC 1 cut(s) 115
PctI GAATGC 2 cut(s) 456, 611
PdmI GAANNNNTTC 1 cut(s) 486
PfeI GAWTC 2 cut(s) 743, 797
PfoI TCCNGGA 1 cut(s) 1051
PkrI GCNGC 4 cut(s) 223, 547, 1021, 1077
PleI GAGTC 2 cut(s) 13, 1110
PpsI GAGTC 2 cut(s) 13, 1110
PpuMI RGGWCCY 1 cut(s) 782
Psp5II RGGWCCY 1 cut(s) 782
Psp6I CCWGG 2 cut(s) 454, 691
PspEI GGTNACC 1 cut(s) 1274
PspFI CCCAGC 2 cut(s) 154, 1064
PspGI CCWGG 2 cut(s) 454, 691
PspN4I GGNNCC 5 cut(s) 252, 345, 376, 783, 985
PspPI GGNCC 3 cut(s) 375, 689, 782
PspPPI RGGWCCY 1 cut(s) 782
PspXI VCTCGAGB 1 cut(s) 849
PstI CTGCAG 1 cut(s) 1191
RsaI GTAC 3 cut(s) 211, 672, 1391
RsaNI GTAC 3 cut(s) 210, 671, 1390
SapI GCTCTTC 1 cut(s) 115
SaqAI TTAA 5 cut(s) 203, 470, 1007, 1040, 1173
SatI GCNGC 4 cut(s) 222, 546, 1020, 1076
Sau3AI GATC 4 cut(s) 415, 427, 838, 1281
Sau96I GGNCC 3 cut(s) 375, 689, 782
ScaI AGTACT 1 cut(s) 672
SchI GAGTC 2 cut(s) 14, 1111
ScrFI CCNGG 4 cut(s) 444, 456, 693, 1053
SfaNI GCATC 1 cut(s) 983
SfcI CTRYAG 2 cut(s) 1187, 1233
Sfr274I CTCGAG 1 cut(s) 849
SinI GGWCC 2 cut(s) 375, 782
SlaI CTCGAG 1 cut(s) 849
SmlI CTYRAG 3 cut(s) 849, 978, 1172
SmoI CTYRAG 3 cut(s) 849, 978, 1172
SseBI AGGCCT 1 cut(s) 1377
SsiI CCGC 3 cut(s) 916, 1075, 1127
SspMI CTAG 5 cut(s) 198, 722, 801, 1089, 1124
StuI AGGCCT 1 cut(s) 1377
StyD4I CCNGG 4 cut(s) 442, 454, 691, 1051
StyI CCWWGG 2 cut(s) 569, 753
TaaI ACNGT 5 cut(s) 40, 79, 136, 940, 1306
TaiI ACGT 1 cut(s) 105
TaqI TCGA 1 cut(s) 850
TatI WGTACW 2 cut(s) 209, 670
TauI GCSGC 1 cut(s) 1078
TfiI GAWTC 2 cut(s) 743, 797
Tru1I TTAA 5 cut(s) 203, 470, 1007, 1040, 1173
Tru9I TTAA 5 cut(s) 203, 470, 1007, 1040, 1173
TscAI CASTG 3 cut(s) 151, 223, 1210
TseFI GTSAC 1 cut(s) 895
TseI GCWGC 3 cut(s) 221, 545, 1019
Tsp45I GTSAC 1 cut(s) 895
TspDTI ATGAA 1 cut(s) 810
TspRI CASTG 3 cut(s) 151, 223, 1210
Vha464I CTTAAG 1 cut(s) 1172
VpaK11BI GGWCC 2 cut(s) 375, 782
XapI RAATTY 4 cut(s) 44, 420, 1092, 1313
XbaI TCTAGA 2 cut(s) 800, 1088
XcmI CCANNNNNNNNNTGG 1 cut(s) 244
XhoI CTCGAG 1 cut(s) 849
XmnI GAANNNNTTC 1 cut(s) 486
XspI CTAG 5 cut(s) 198, 722, 801, 1089, 1124
ZrmI AGTACT 1 cut(s) 672
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.