Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0005848

Physical Location & Seq

Genomic Coordinates Reverse (-)

19636602 .. 19639243

Gene Structure 2642 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g18750.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGTTCTGCGGCGAGCTGGGGCCGATGTTACTGTGGCTTCTGTGGAGAAGCAGCTTCGGGTTGATGGTTACCACGGCGTTAAGATCGATCGCTGATGCTTTGATTTCGGATTGTAGCCAAACTGTTTTCGATCTCATCGCTCTACCCGGAGGCATCCCTGGTGCTGCTAATCTTAAGAATAGTGAGGTTCTGGAAAGCTTGGTGAAGAAGCAGGCTGCAGATGGGAAACTCTACGCTGCAATCTGTGCTTCACCTGCAGTGGCACTTGCATCATGGGGCGTGTTGAAGGGACTGAAAGCAACTGGTTATCCACCTTTTATGGAGCAATTAGCATCTGGTGCAATCGCTGTTGAATCAAGAGTGCAGGTGGATGGCAAAGTTGTGACAAGTCGTGGACCTGGTACTACCATGGAGTTTGCTGTTGCACTGGTCGAGCAATTGTATGGGAAAGAAAAAGCTGATGAAGTTTCTGGGCCACTGGTGATGCGGTCCAACCATGGGGATGAATATGTCATAACTGAGCTAAACTCAGTTGAGTGGACTGCCAGTGATTCCCCTAAGATTCTTGTACCTATTGCGAATGGCACAGAGGAAATGGAAGCTATTATAATCATTGATATTCTACGATGGGCCAAAGCAGATGTTGTGGTGGCCTCTGTAGAGGATAAACTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005886 GO:0005911 GO:0006081 GO:0006082 GO:0006089 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009438 GO:0009506 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010035 GO:0010038 GO:0016020 GO:0016053 GO:0016829 GO:0016835 GO:0016836 GO:0019172 GO:0019249 GO:0019752 GO:0030054 GO:0031090 GO:0032787 GO:0042180 GO:0042182 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044248 GO:0044249 GO:0044281 GO:0044282 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046185 GO:0046394 GO:0046686 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051596 GO:0055044 GO:0061727 GO:0065007 GO:0071704 GO:0071944 GO:0072330 GO:0080134 GO:0080135 GO:0098588 GO:0098805 GO:1900407 GO:1900409 GO:1901575 GO:1901576 GO:1901615 GO:1901617 GO:1902882 GO:1902884

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DJ-1_PfpI

Protein Analysis

225

Amino Acids

23.81

Weight (kDa)

4.68

Isoelectric Point (pI)

33.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DJ-1_PfpI	PF01965	30 - 146	1.7e-32	DJ-1/PfpI family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005848)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34020 AT4G34020 AT4G34020 AT4G34020
fragaria_vesca	FvH4_2g05880 FvH4_2g05880 FvH4_2g05880 FvH4_2g05880 FvH4_2g05880 FvH4_2g05880
malus_domestica	MD05G1082200.v1.1
prunus_persica	Prupe.8G126700_v2.0.a1 Prupe.8G126700_v2.0.a1
pyrus_communis	pycom03g18750 pycom05g07700
rosa_chinensis	RchiOBHm_Chr6g0257661
rosa_laevigata	RLG00000014715
rosa_multiflora	Rmu_co8071652.1_g000001 Rmu_co8413389.1_g000001 Rmu_sc0026590.1_g000001
rosa_rugosa	Rorug05G0569400 Rorug05G0569500 Rorug05G0569600
rosa_samantha	Rh6AG086100 Rh6BG080200 Rh6CG075200 Rh6DG072100
rosa_wichuraiana	Rw6G007710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	608
AarI	CACCTGC	2 cut(s)	262, 355
Acc36I	ACCTGC	2 cut(s)	262, 355
AciI	CCGC	2 cut(s)	9, 487
AfaI	GTAC	2 cut(s)	403, 570
AfiI	CCNNNNNNNGG	1 cut(s)	498
AflII	CTTAAG	1 cut(s)	173
AgsI	TTSAA	2 cut(s)	286, 353
AjnI	CCWGG	2 cut(s)	157, 397
AluBI	AGCT	6 cut(s)	16, 54, 198, 458, 523, 602
AluI	AGCT	6 cut(s)	16, 54, 198, 458, 523, 602
AoxI	GGCC	4 cut(s)	20, 473, 630, 651
ApeKI	GCWGC	4 cut(s)	51, 164, 215, 236
AspS9I	GGNCC	5 cut(s)	20, 395, 473, 489, 630
AsuC2I	CCSGG	1 cut(s)	147
AsuHPI	GGTGA	3 cut(s)	214, 243, 493
AvaII	GGWCC	2 cut(s)	395, 489
BbvI	GCAGC	4 cut(s)	63, 151, 202, 223
BccI	CCATC	4 cut(s)	58, 215, 365, 621
BceAI	ACGGC	1 cut(s)	90
BciT130I	CCWGG	2 cut(s)	159, 399
BcnI	CCSGG	1 cut(s)	147
BfmI	CTRYAG	3 cut(s)	216, 255, 657
BfrI	CTTAAG	1 cut(s)	173
BfuAI	ACCTGC	2 cut(s)	262, 355
BisI	GCNGC	5 cut(s)	10, 52, 165, 216, 237
BlsI	GCNGC	5 cut(s)	11, 53, 166, 217, 238
Bme1390I	CCNGG	3 cut(s)	147, 159, 399
Bme18I	GGWCC	2 cut(s)	395, 489
BmgT120I	GGNCC	5 cut(s)	20, 395, 473, 489, 630
BmiI	GGNNCC	1 cut(s)	21
BmrFI	CCNGG	3 cut(s)	147, 159, 399
BmsI	GCATC	5 cut(s)	85, 162, 278, 341, 474
BplI	GAGNNNNNCTC	2 cut(s)	512, 544
BpuMI	CCSGG	1 cut(s)	147
Bsa29I	ATCGAT	1 cut(s)	86
BsaJI	CCNNGG	4 cut(s)	72, 157, 408, 496
Bsc4I	CCNNNNNNNGG	1 cut(s)	498
Bse1I	ACTGG	4 cut(s)	307, 432, 483, 546
BseBI	CCWGG	2 cut(s)	159, 399
BseCI	ATCGAT	1 cut(s)	86
BseDI	CCNNGG	4 cut(s)	72, 157, 408, 496
BseGI	GGATG	3 cut(s)	153, 376, 508
BseLI	CCNNNNNNNGG	1 cut(s)	498
BseMII	CTCAG	2 cut(s)	510, 543
BseNI	ACTGG	4 cut(s)	307, 432, 483, 546
BseXI	GCAGC	4 cut(s)	63, 151, 202, 223
BseYI	CCCAGC	1 cut(s)	16
BsgI	GTGCAG	1 cut(s)	383
Bsh1285I	CGRYCG	1 cut(s)	90
BshFI	GGCC	4 cut(s)	22, 475, 632, 653
BshVI	ATCGAT	1 cut(s)	86
BsiEI	CGRYCG	1 cut(s)	90
BsiSI	CCGG	1 cut(s)	147
BslFI	GGGAC	1 cut(s)	303
BslI	CCNNNNNNNGG	1 cut(s)	498
BsmFI	GGGAC	1 cut(s)	303
BsnI	GGCC	4 cut(s)	22, 475, 632, 653
Bsp143I	GATC	3 cut(s)	83, 87, 130
Bsp19I	CCATGG	2 cut(s)	408, 496
BspACI	CCGC	2 cut(s)	9, 487
BspANI	GGCC	4 cut(s)	22, 475, 632, 653
BspCNI	CTCAG	2 cut(s)	511, 542
BspDI	ATCGAT	1 cut(s)	86
BspLI	GGNNCC	1 cut(s)	21
BspMAI	CTGCAG	2 cut(s)	220, 259
BspMI	ACCTGC	2 cut(s)	262, 355
BspTI	CTTAAG	1 cut(s)	173
BsrI	ACTGG	4 cut(s)	307, 432, 483, 546
BssECI	CCNNGG	4 cut(s)	72, 157, 408, 496
BssMI	GATC	3 cut(s)	83, 87, 130
BssT1I	CCWWGG	2 cut(s)	408, 496
Bst2UI	CCWGG	2 cut(s)	159, 399
Bst4CI	ACNGT	2 cut(s)	33, 124
BstAFI	CTTAAG	1 cut(s)	173
BstAPI	GCANNNNNTGC	2 cut(s)	245, 338
BstC8I	GCNNGC	2 cut(s)	14, 213
BstDEI	CTNAG	3 cut(s)	519, 529, 558
BstDSI	CCRYGG	3 cut(s)	72, 408, 496
BstEII	GGTNACC	1 cut(s)	67
BstF5I	GGATG	3 cut(s)	153, 376, 508
BstKTI	GATC	3 cut(s)	86, 90, 133
BstMBI	GATC	3 cut(s)	83, 87, 130
BstMCI	CGRYCG	1 cut(s)	90
BstMWI	GCNNNNNNNGC	3 cut(s)	245, 254, 338
BstNI	CCWGG	2 cut(s)	159, 399
BstPI	GGTNACC	1 cut(s)	67
BstSCI	CCNGG	3 cut(s)	145, 157, 397
BstSFI	CTRYAG	3 cut(s)	216, 255, 657
BstV1I	GCAGC	4 cut(s)	63, 151, 202, 223
Bsu15I	ATCGAT	1 cut(s)	86
BsuRI	GGCC	4 cut(s)	22, 475, 632, 653
BsuTUI	ATCGAT	1 cut(s)	86
BtgI	CCRYGG	3 cut(s)	72, 408, 496
BtgZI	GCGATG	1 cut(s)	121
BtsCI	GGATG	3 cut(s)	153, 376, 508
BtsI	GCAGTG	1 cut(s)	264
BtsIMutI	CAGTG	4 cut(s)	264, 425, 476, 553
BveI	ACCTGC	2 cut(s)	262, 355
Cac8I	GCNNGC	2 cut(s)	14, 213
Cfr13I	GGNCC	5 cut(s)	20, 395, 473, 489, 630
ClaI	ATCGAT	1 cut(s)	86
CsiI	ACCWGGT	1 cut(s)	397
Csp6I	GTAC	2 cut(s)	402, 569
CviAII	CATG	3 cut(s)	273, 409, 497
CviQI	GTAC	2 cut(s)	402, 569
DdeI	CTNAG	3 cut(s)	519, 529, 558
DpnI	GATC	3 cut(s)	85, 89, 132
DpnII	GATC	3 cut(s)	83, 87, 130
Eco130I	CCWWGG	2 cut(s)	408, 496
Eco47I	GGWCC	2 cut(s)	395, 489
Eco91I	GGTNACC	1 cut(s)	67
EcoO65I	GGTNACC	1 cut(s)	67
EcoRII	CCWGG	2 cut(s)	157, 397
EcoT14I	CCWWGG	2 cut(s)	408, 496
ErhI	CCWWGG	2 cut(s)	408, 496
FaeI	CATG	3 cut(s)	276, 412, 500
FaiI	YATR	9 cut(s)	274, 320, 410, 444, 498, 510, 515, 608, 673
FaqI	GGGAC	1 cut(s)	303
FatI	CATG	3 cut(s)	272, 408, 496
Fnu4HI	GCNGC	5 cut(s)	10, 52, 165, 216, 237
FokI	GGATG	3 cut(s)	140, 383, 515
Fsp4HI	GCNGC	5 cut(s)	10, 52, 165, 216, 237
GluI	GCNGC	5 cut(s)	10, 52, 165, 216, 237
GsaI	CCCAGC	1 cut(s)	20
HaeIII	GGCC	4 cut(s)	22, 475, 632, 653
HapII	CCGG	1 cut(s)	147
Hin1II	CATG	3 cut(s)	276, 412, 500
HindIII	AAGCTT	1 cut(s)	196
HinfI	GANTC	3 cut(s)	353, 551, 562
HpaII	CCGG	1 cut(s)	147
HphI	GGTGA	3 cut(s)	214, 243, 493
Hpy166II	GTNNAC	2 cut(s)	395, 540
Hpy188I	TCNGA	1 cut(s)	109
Hpy188III	TCNNGA	2 cut(s)	191, 357
Hpy8I	GTNNAC	2 cut(s)	395, 540
HpyAV	CCTTC	1 cut(s)	280
HpyCH4III	ACNGT	2 cut(s)	33, 124
HpyCH4V	TGCA	7 cut(s)	218, 239, 257, 269, 341, 364, 425
HpyF10VI	GCNNNNNNNGC	3 cut(s)	245, 254, 338
HpyF3I	CTNAG	3 cut(s)	519, 529, 558
Hsp92II	CATG	3 cut(s)	276, 412, 500
Kzo9I	GATC	3 cut(s)	83, 87, 130
LmnI	GCTCC	1 cut(s)	322
Lsp1109I	GCAGC	4 cut(s)	63, 151, 202, 223
LweI	GCATC	5 cut(s)	85, 162, 278, 341, 474
MabI	ACCWGGT	1 cut(s)	397
MaeIII	GTNAC	3 cut(s)	27, 67, 382
MalI	GATC	3 cut(s)	85, 89, 132
MboI	GATC	3 cut(s)	83, 87, 130
MboII	GAAGA	1 cut(s)	217
MfeI	CAATTG	1 cut(s)	437
MluCI	AATT	2 cut(s)	326, 437
MmeI	TCCRAC	1 cut(s)	516
MnlI	CCTC	5 cut(s)	143, 178, 583, 655, 664
MseI	TTAA	2 cut(s)	80, 174
MslI	CAYNNNNRTG	1 cut(s)	501
MspCI	CTTAAG	1 cut(s)	173
MspI	CCGG	1 cut(s)	147
MspR9I	CCNGG	3 cut(s)	147, 159, 399
MunI	CAATTG	1 cut(s)	437
MvaI	CCWGG	2 cut(s)	159, 399
MwoI	GCNNNNNNNGC	3 cut(s)	245, 254, 338
NciI	CCSGG	1 cut(s)	147
NcoI	CCATGG	2 cut(s)	408, 496
NdeII	GATC	3 cut(s)	83, 87, 130
NlaIII	CATG	3 cut(s)	276, 412, 500
NlaIV	GGNNCC	1 cut(s)	21
NmuCI	GTSAC	1 cut(s)	382
PaqCI	CACCTGC	2 cut(s)	262, 355
PfeI	GAWTC	3 cut(s)	353, 551, 562
PkrI	GCNGC	5 cut(s)	11, 53, 166, 217, 238
Ple19I	CGATCG	1 cut(s)	90
PsiI	TTATAA	1 cut(s)	608
Psp6I	CCWGG	2 cut(s)	157, 397
PspEI	GGTNACC	1 cut(s)	67
PspFI	CCCAGC	1 cut(s)	16
PspGI	CCWGG	2 cut(s)	157, 397
PspN4I	GGNNCC	1 cut(s)	21
PspPI	GGNCC	5 cut(s)	20, 395, 473, 489, 630
PstI	CTGCAG	2 cut(s)	220, 259
PvuI	CGATCG	1 cut(s)	90
RsaI	GTAC	2 cut(s)	403, 570
RsaNI	GTAC	2 cut(s)	402, 569
RseI	CAYNNNNRTG	1 cut(s)	501
SaqAI	TTAA	2 cut(s)	80, 174
SatI	GCNGC	5 cut(s)	10, 52, 165, 216, 237
Sau3AI	GATC	3 cut(s)	83, 87, 130
Sau96I	GGNCC	5 cut(s)	20, 395, 473, 489, 630
ScrFI	CCNGG	3 cut(s)	147, 159, 399
SexAI	ACCWGGT	1 cut(s)	397
SfaNI	GCATC	5 cut(s)	85, 162, 278, 341, 474
SfcI	CTRYAG	3 cut(s)	216, 255, 657
SinI	GGWCC	2 cut(s)	395, 489
SmiMI	CAYNNNNRTG	1 cut(s)	501
SmlI	CTYRAG	1 cut(s)	173
SmoI	CTYRAG	1 cut(s)	173
Sse9I	AATT	2 cut(s)	326, 437
SsiI	CCGC	2 cut(s)	9, 487
StyD4I	CCNGG	3 cut(s)	145, 157, 397
StyI	CCWWGG	2 cut(s)	408, 496
TaaI	ACNGT	2 cut(s)	33, 124
TaqI	TCGA	3 cut(s)	86, 129, 432
TasI	AATT	2 cut(s)	326, 437
TauI	GCSGC	1 cut(s)	12
TfiI	GAWTC	3 cut(s)	353, 551, 562
Tru1I	TTAA	2 cut(s)	80, 174
Tru9I	TTAA	2 cut(s)	80, 174
TscAI	CASTG	4 cut(s)	264, 432, 483, 553
TseFI	GTSAC	1 cut(s)	382
TseI	GCWGC	4 cut(s)	51, 164, 215, 236
Tsp45I	GTSAC	1 cut(s)	382
TspDTI	ATGAA	2 cut(s)	477, 519
TspRI	CASTG	4 cut(s)	264, 432, 483, 553
Vha464I	CTTAAG	1 cut(s)	173
VpaK11BI	GGWCC	2 cut(s)	395, 489

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.