Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0005848

Physical Location & Seq

Genomic Coordinates Forward (+)

7733757 .. 7737267

Gene Structure 3511 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG072100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

ATGGAGTCTCTGTGTTCAGTTCTCTTACCAACGACGGTGAAATTCTCTTACCCAAACCTTACTTCAACGGCTACTGTTGCTTCTTTCTCAATCAAGAACGTGGCCTCCGGCCAGCGAAGAGCAGCAGCTAATGTAAAATCCTCTGAAAACCCAGCTAAAACCATCTCTCCAGCTCAACCAGCAAACCCAGTTTCTAGTTCAAAGAGTACAAGCACTGCTGCTTCTCTGCCTCCCAAGAAGGTTCTCGTTCCGATTGGGTTTGGGACTGAAGAAATGGAGGCTGTGATTATGGTGGATGTTCTGCGCCGAGCTGGTGCTGATGTCATTGTGGCCTCGGTGGAGCCGCAGCTCCAAATTGAAGCTTCTTGTGGGACTAAGTTGGTTGCTGATACCTCCATTTCCTCCTGTTCTGATCAAATTTTTGATCTTGTGGCTTTACCGGGAGGAATGCCTGGTTCGGTGAGATTAAGAGACTGCGAAGTTCTTCAGAAAATTACAAGACAACAGGCTGAGGAAAGGAGGTTATATGGAGCTATATGTGCTGCTCCAGCAGTAACACTTCTACCGTGGGGTCTTCTAAGGAGAAAGCAGACAACTTGCCACCCTGCATTCTTCGACAAGCTACCAACCTTCTGGGCAGTCAAATCAAACATTCAAGTTTCTGGAGTACTCACAACAAGCCGTGGCCCTGGAACTTGTTTTGTTTTTGCCCTGTGCCTAGTGGAACAACTATTTGGGGAATCTGTCGCCAAGGAAATTGGAGAGTTGCTGTTGGTGGGTCCTGCTGATGATGAATCTAGAAAGGAGGAGTTCAACAAAGTTGAATGGTCTTTTGATCACATCCCTCGAGTTCTCATTCCAGTTGCAAATGGTTCTGAAGAGATTGAAGTAGTGACTATTGTAGATATTCTGCGGAGAGCAAAGGTGGACATAACTGTTGCTTCAGTTGAAAAATCTGTGCAGATTTTGGCATCTCAAGGCACCAAAATCATAGCTGACAAGTTAATTGGTGTTTCTGCCAAGTCAACATATGATTTAATCATTCTTCCGGTGAGACAAAGCAAATGTATACTGATACAGTTATTTTTTGGTCTGCCTAAAACAACCTATCAGGATATGGAGATCATGTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009536 GO:0009657 GO:0009658 GO:0009987 GO:0016043 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DJ-1_PfpI

Protein Analysis

377

Amino Acids

40.67

Weight (kDa)

7.48

Isoelectric Point (pI)

53.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DJ-1_PfpI	PF01965	79 - 243	6.8e-39	DJ-1/PfpI family
DJ-1_PfpI	PF01965	283 - 350	4.6e-10	DJ-1/PfpI family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005848)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34020 AT4G34020 AT4G34020 AT4G34020
fragaria_vesca	FvH4_2g05880 FvH4_2g05880 FvH4_2g05880 FvH4_2g05880 FvH4_2g05880 FvH4_2g05880
malus_domestica	MD05G1082200.v1.1
prunus_persica	Prupe.8G126700_v2.0.a1 Prupe.8G126700_v2.0.a1
pyrus_communis	pycom03g18750 pycom05g07700
rosa_chinensis	RchiOBHm_Chr6g0257661
rosa_laevigata	RLG00000014715
rosa_multiflora	Rmu_co8071652.1_g000001 Rmu_co8413389.1_g000001 Rmu_sc0026590.1_g000001
rosa_rugosa	Rorug05G0569400 Rorug05G0569500 Rorug05G0569600
rosa_samantha	Rh6AG086100 Rh6BG080200 Rh6CG075200 Rh6DG072100
rosa_wichuraiana	Rw6G007710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	980
AccI	GTMKAC	1 cut(s)	1069
AciI	CCGC	2 cut(s)	344, 913
AcoI	YGGCCR	1 cut(s)	109
AcsI	RAATTY	2 cut(s)	41, 417
AcuI	CTGAAG	4 cut(s)	288, 470, 897, 927
AfaI	GTAC	2 cut(s)	208, 669
AgsI	TTSAA	8 cut(s)	66, 201, 359, 656, 814, 824, 887, 950
AjnI	CCWGG	2 cut(s)	451, 688
AjuI	GAANNNNNNNTTGG	4 cut(s)	46, 78, 717, 749
AloI	GAACNNNNNNTCC	2 cut(s)	89, 121
AluBI	AGCT	9 cut(s)	128, 155, 173, 311, 349, 362, 533, 622, 995
AluI	AGCT	9 cut(s)	128, 155, 173, 311, 349, 362, 533, 622, 995
Alw26I	GTCTC	3 cut(s)	12, 465, 1048
Ama87I	CYCGRG	1 cut(s)	846
AoxI	GGCC	4 cut(s)	102, 109, 330, 685
ApeKI	GCWGC	5 cut(s)	122, 125, 218, 346, 542
ApoI	RAATTY	2 cut(s)	41, 417
Asp700I	GAANNNNTTC	1 cut(s)	483
AspLEI	GCGC	1 cut(s)	306
AspS9I	GGNCC	2 cut(s)	686, 779
AsuC2I	CCSGG	1 cut(s)	441
AsuHPI	GGTGA	3 cut(s)	49, 472, 1063
AvaI	CYCGRG	1 cut(s)	846
AvaII	GGWCC	1 cut(s)	779
BanI	GGYRCC	1 cut(s)	980
BbsI	GAAGAC	1 cut(s)	566
BbvCI	CCTCAGC	1 cut(s)	510
BbvI	GCAGC	5 cut(s)	134, 137, 205, 358, 529
BccI	CCATC	1 cut(s)	170
BceAI	ACGGC	2 cut(s)	84, 666
BciT130I	CCWGG	2 cut(s)	453, 690
BclI	TGATCA	2 cut(s)	412, 835
BcnI	CCSGG	1 cut(s)	441
BcoDI	GTCTC	3 cut(s)	12, 465, 1048
BfaI	CTAG	3 cut(s)	195, 719, 798
BisI	GCNGC	6 cut(s)	123, 126, 219, 344, 347, 543
BlsI	GCNGC	6 cut(s)	124, 127, 220, 345, 348, 544
BmcAI	AGTACT	1 cut(s)	669
Bme1390I	CCNGG	3 cut(s)	441, 453, 690
Bme18I	GGWCC	1 cut(s)	779
BmeT110I	CYCGRG	1 cut(s)	846
BmgT120I	GGNCC	2 cut(s)	686, 779
BmiI	GGNNCC	3 cut(s)	342, 780, 982
BmrFI	CCNGG	3 cut(s)	441, 453, 690
BmrI	ACTGGG	1 cut(s)	182
BmsI	GCATC	1 cut(s)	980
BmuI	ACTGGG	1 cut(s)	182
BpiI	GAAGAC	1 cut(s)	566
BpmI	CTGGAG	3 cut(s)	153, 531, 684
Bpu10I	CCTNAGC	1 cut(s)	510
BpuEI	CTTGAG	1 cut(s)	960
BpuMI	CCSGG	1 cut(s)	441
BsaJI	CCNNGG	5 cut(s)	333, 566, 682, 688, 750
BsaWI	WCCGGW	1 cut(s)	1048
BsaXI	ACNNNNNCTCC	6 cut(s)	26, 89, 119, 151, 181, 1112
Bse1I	ACTGG	2 cut(s)	188, 860
BseBI	CCWGG	2 cut(s)	453, 690
BseDI	CCNNGG	5 cut(s)	333, 566, 682, 688, 750
BseGI	GGATG	2 cut(s)	301, 840
BseMII	CTCAG	1 cut(s)	501
BseNI	ACTGG	2 cut(s)	188, 860
BseRI	GAGGAG	1 cut(s)	821
BseXI	GCAGC	5 cut(s)	134, 137, 205, 358, 529
BseYI	CCCAGC	1 cut(s)	151
BsgI	GTGCAG	1 cut(s)	980
BshFI	GGCC	4 cut(s)	104, 111, 332, 687
BshNI	GGYRCC	1 cut(s)	980
BsiHKCI	CYCGRG	1 cut(s)	846
BsiSI	CCGG	3 cut(s)	108, 440, 1049
BslFI	GGGAC	2 cut(s)	277, 385
BsmAI	GTCTC	3 cut(s)	12, 465, 1048
BsmFI	GGGAC	2 cut(s)	277, 385
BsmI	GAATGC	2 cut(s)	453, 608
BsnI	GGCC	4 cut(s)	104, 111, 332, 687
BsoBI	CYCGRG	1 cut(s)	846
Bsp143I	GATC	4 cut(s)	412, 424, 835, 1122
BspACI	CCGC	2 cut(s)	344, 913
BspANI	GGCC	4 cut(s)	104, 111, 332, 687
BspCNI	CTCAG	1 cut(s)	502
BspLI	GGNNCC	3 cut(s)	342, 780, 982
BspQI	GCTCTTC	1 cut(s)	112
BspT107I	GGYRCC	1 cut(s)	980
BsrI	ACTGG	2 cut(s)	188, 860
BssECI	CCNNGG	5 cut(s)	333, 566, 682, 688, 750
BssMI	GATC	4 cut(s)	412, 424, 835, 1122
BssNAI	GTATAC	1 cut(s)	1070
BssT1I	CCWWGG	1 cut(s)	750
Bst1107I	GTATAC	1 cut(s)	1070
Bst2UI	CCWGG	2 cut(s)	453, 690
Bst4CI	ACNGT	5 cut(s)	37, 76, 567, 937, 1080
Bst6I	CTCTTC	2 cut(s)	112, 873
BstC8I	GCNNGC	1 cut(s)	113
BstDEI	CTNAG	3 cut(s)	375, 510, 578
BstDSI	CCRYGG	2 cut(s)	566, 682
BstF5I	GGATG	2 cut(s)	301, 840
BstHHI	GCGC	1 cut(s)	306
BstKTI	GATC	4 cut(s)	415, 427, 838, 1125
BstMAI	GTCTC	3 cut(s)	12, 465, 1048
BstMBI	GATC	4 cut(s)	412, 424, 835, 1122
BstMWI	GCNNNNNNNGC	4 cut(s)	77, 179, 539, 548
BstNI	CCWGG	2 cut(s)	453, 690
BstSCI	CCNGG	3 cut(s)	439, 451, 688
BstV1I	GCAGC	5 cut(s)	134, 137, 205, 358, 529
BstV2I	GAAGAC	1 cut(s)	566
BstXI	CCANNNNNNTGG	1 cut(s)	633
BstZ17I	GTATAC	1 cut(s)	1070
BsuRI	GGCC	4 cut(s)	104, 111, 332, 687
BtgI	CCRYGG	2 cut(s)	566, 682
BtsCI	GGATG	2 cut(s)	301, 840
BtsI	GCAGTG	1 cut(s)	213
BtsIMutI	CAGTG	1 cut(s)	213
Cac8I	GCNNGC	1 cut(s)	113
CfoI	GCGC	1 cut(s)	306
Cfr13I	GGNCC	2 cut(s)	686, 779
Csp6I	GTAC	2 cut(s)	207, 668
CviAII	CATG	1 cut(s)	1126
CviQI	GTAC	2 cut(s)	207, 668
DdeI	CTNAG	3 cut(s)	375, 510, 578
DpnI	GATC	4 cut(s)	414, 426, 837, 1124
DpnII	GATC	4 cut(s)	412, 424, 835, 1122
EaeI	YGGCCR	1 cut(s)	109
Eam1104I	CTCTTC	2 cut(s)	112, 873
EarI	CTCTTC	2 cut(s)	112, 873
Eco130I	CCWWGG	1 cut(s)	750
Eco47I	GGWCC	1 cut(s)	779
Eco57I	CTGAAG	4 cut(s)	288, 470, 897, 927
Eco88I	CYCGRG	1 cut(s)	846
EcoO109I	RGGNCCY	1 cut(s)	779
EcoRII	CCWGG	2 cut(s)	451, 688
EcoT14I	CCWWGG	1 cut(s)	750
ErhI	CCWWGG	1 cut(s)	750
FaeI	CATG	1 cut(s)	1129
FaqI	GGGAC	2 cut(s)	277, 385
FatI	CATG	1 cut(s)	1125
FauNDI	CATATG	1 cut(s)	1030
FbaI	TGATCA	2 cut(s)	412, 835
FblI	GTMKAC	1 cut(s)	1069
Fnu4HI	GCNGC	6 cut(s)	123, 126, 219, 344, 347, 543
FokI	GGATG	2 cut(s)	308, 827
Fsp4HI	GCNGC	6 cut(s)	123, 126, 219, 344, 347, 543
FspBI	CTAG	3 cut(s)	195, 719, 798
GlaI	GCGC	1 cut(s)	305
GluI	GCNGC	6 cut(s)	123, 126, 219, 344, 347, 543
GsaI	CCCAGC	1 cut(s)	155
GsuI	CTGGAG	3 cut(s)	153, 531, 684
HaeIII	GGCC	4 cut(s)	104, 111, 332, 687
HapII	CCGG	3 cut(s)	108, 440, 1049
HhaI	GCGC	1 cut(s)	306
Hin1II	CATG	1 cut(s)	1129
Hin6I	GCGC	1 cut(s)	304
HinP1I	GCGC	1 cut(s)	304
HincII	GTYRAC	1 cut(s)	1026
HindII	GTYRAC	1 cut(s)	1026
HindIII	AAGCTT	1 cut(s)	360
HinfI	GANTC	3 cut(s)	5, 740, 794
HpaII	CCGG	3 cut(s)	108, 440, 1049
HphI	GGTGA	3 cut(s)	49, 472, 1063
Hpy166II	GTNNAC	3 cut(s)	928, 1026, 1070
Hpy188I	TCNGA	5 cut(s)	145, 252, 412, 489, 877
Hpy188III	TCNNGA	4 cut(s)	94, 663, 798, 1112
Hpy8I	GTNNAC	3 cut(s)	928, 1026, 1070
Hpy99I	CGWCG	1 cut(s)	37
HpyAV	CCTTC	2 cut(s)	232, 640
HpyCH4III	ACNGT	5 cut(s)	37, 76, 567, 937, 1080
HpyCH4IV	ACGT	1 cut(s)	99
HpyCH4V	TGCA	3 cut(s)	608, 866, 961
HpyF10VI	GCNNNNNNNGC	4 cut(s)	77, 179, 539, 548
HpyF3I	CTNAG	3 cut(s)	375, 510, 578
HpySE526I	ACGT	1 cut(s)	99
Hsp92II	CATG	1 cut(s)	1129
HspAI	GCGC	1 cut(s)	304
Ksp22I	TGATCA	2 cut(s)	412, 835
Kzo9I	GATC	4 cut(s)	412, 424, 835, 1122
LguI	GCTCTTC	1 cut(s)	112
LmnI	GCTCC	4 cut(s)	340, 354, 530, 550
Lsp1109I	GCAGC	5 cut(s)	134, 137, 205, 358, 529
LweI	GCATC	1 cut(s)	980
MaeI	CTAG	3 cut(s)	195, 719, 798
MaeII	ACGT	1 cut(s)	99
MaeIII	GTNAC	2 cut(s)	553, 892
MalI	GATC	4 cut(s)	414, 426, 837, 1124
MboI	GATC	4 cut(s)	412, 424, 835, 1122
MboII	GAAGA	7 cut(s)	129, 281, 476, 566, 604, 890, 1037
MluCI	AATT	6 cut(s)	41, 354, 417, 492, 756, 1005
MlyI	GAGTC	1 cut(s)	14
MroXI	GAANNNNTTC	1 cut(s)	483
MseI	TTAA	3 cut(s)	467, 1004, 1037
MspI	CCGG	3 cut(s)	108, 440, 1049
MspR9I	CCNGG	3 cut(s)	441, 453, 690
Mva1269I	GAATGC	2 cut(s)	453, 608
MvaI	CCWGG	2 cut(s)	453, 690
MwoI	GCNNNNNNNGC	4 cut(s)	77, 179, 539, 548
NciI	CCSGG	1 cut(s)	441
NdeI	CATATG	1 cut(s)	1030
NdeII	GATC	4 cut(s)	412, 424, 835, 1122
NlaIII	CATG	1 cut(s)	1129
NlaIV	GGNNCC	3 cut(s)	342, 780, 982
NmeAIII	GCCGAG	1 cut(s)	332
NmuCI	GTSAC	1 cut(s)	892
PaeR7I	CTCGAG	1 cut(s)	846
PciSI	GCTCTTC	1 cut(s)	112
PctI	GAATGC	2 cut(s)	453, 608
PdmI	GAANNNNTTC	1 cut(s)	483
PfeI	GAWTC	2 cut(s)	740, 794
PkrI	GCNGC	6 cut(s)	124, 127, 220, 345, 348, 544
PleI	GAGTC	1 cut(s)	13
PpsI	GAGTC	1 cut(s)	13
PpuMI	RGGWCCY	1 cut(s)	779
Psp5II	RGGWCCY	1 cut(s)	779
Psp6I	CCWGG	2 cut(s)	451, 688
PspFI	CCCAGC	1 cut(s)	151
PspGI	CCWGG	2 cut(s)	451, 688
PspN4I	GGNNCC	3 cut(s)	342, 780, 982
PspPI	GGNCC	2 cut(s)	686, 779
PspPPI	RGGWCCY	1 cut(s)	779
PspXI	VCTCGAGB	1 cut(s)	846
RsaI	GTAC	2 cut(s)	208, 669
RsaNI	GTAC	2 cut(s)	207, 668
SapI	GCTCTTC	1 cut(s)	112
SaqAI	TTAA	3 cut(s)	467, 1004, 1037
SatI	GCNGC	6 cut(s)	123, 126, 219, 344, 347, 543
Sau3AI	GATC	4 cut(s)	412, 424, 835, 1122
Sau96I	GGNCC	2 cut(s)	686, 779
ScaI	AGTACT	1 cut(s)	669
SchI	GAGTC	1 cut(s)	14
ScrFI	CCNGG	3 cut(s)	441, 453, 690
SfaNI	GCATC	1 cut(s)	980
Sfr274I	CTCGAG	1 cut(s)	846
SinI	GGWCC	1 cut(s)	779
SlaI	CTCGAG	1 cut(s)	846
SmlI	CTYRAG	2 cut(s)	846, 975
SmoI	CTYRAG	2 cut(s)	846, 975
Sse9I	AATT	6 cut(s)	41, 354, 417, 492, 756, 1005
SsiI	CCGC	2 cut(s)	344, 913
SspMI	CTAG	3 cut(s)	195, 719, 798
StyD4I	CCNGG	3 cut(s)	439, 451, 688
StyI	CCWWGG	1 cut(s)	750
TaaI	ACNGT	5 cut(s)	37, 76, 567, 937, 1080
TaiI	ACGT	1 cut(s)	102
TaqI	TCGA	2 cut(s)	615, 847
TasI	AATT	6 cut(s)	41, 354, 417, 492, 756, 1005
TatI	WGTACW	2 cut(s)	206, 667
TauI	GCSGC	1 cut(s)	346
TfiI	GAWTC	2 cut(s)	740, 794
Tru1I	TTAA	3 cut(s)	467, 1004, 1037
Tru9I	TTAA	3 cut(s)	467, 1004, 1037
TscAI	CASTG	1 cut(s)	220
TseFI	GTSAC	1 cut(s)	892
TseI	GCWGC	5 cut(s)	122, 125, 218, 346, 542
Tsp45I	GTSAC	1 cut(s)	892
TspDTI	ATGAA	1 cut(s)	807
TspRI	CASTG	1 cut(s)	220
VpaK11BI	GGWCC	1 cut(s)	779
XapI	RAATTY	2 cut(s)	41, 417
XbaI	TCTAGA	1 cut(s)	797
XhoI	CTCGAG	1 cut(s)	846
XmiI	GTMKAC	1 cut(s)	1069
XmnI	GAANNNNTTC	1 cut(s)	483
XspI	CTAG	3 cut(s)	195, 719, 798
ZrmI	AGTACT	1 cut(s)	669

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.