Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0005848

Physical Location & Seq

Genomic Coordinates Reverse (-)

76271288 .. 76271938

Gene Structure 651 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0569500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGAGCAATGGCTCTCTAGCAACCTTCCTCTTTGGAGAGTCAAGACCAAACTGGAATAAAAGGAAAAAAATTGCCTTGGGAACTGCAAGAGGGCTCTTGTATTTGCATGAGGAGTGCAGCAGCCAAATCATACATTGTGACATTAAGCCTCAAAACATTCTTCTCGACGATTCTTTCACAGCAAGAATAGCTGATTTTGGAGTATCCAAGCTTTTGAAATCTGACCAAACTCGAACAACTACTAGAATCAGAGGCACAAAAGGTTATGTCGCCCCTGAATGGTTCAAAAGTTTGCCCGTCACAGTGAAGGTTGATGTCTATAGCTATGGCATTGTGTTGTTAGAGATTGTTTGCTGCAGGAAAAACTATGAAGCACAAGCACCAGCTGAAGATCAAATGATATTAGCCGACTGGGCATACAATTGCTATGAGCAAAAGAAACTGCATCTGTTGTTGCAGAATGTCAGTGACGATCAGGCAATGGATGGCATCAAGGAGTTGGAGAAGTACTTGATGATTGCATTTTGGTGCATTCAAGAGGATCCATCAGTAAGACCTACCATAAAGAAAGTGATACAGATGCTTGAAGGCACTGTTGAAGTCTCAGTGCCTCCAATGAACCCCTCCTCATTATATGTTCAATCTAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009536 GO:0009657 GO:0009658 GO:0009987 GO:0016043 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DJ-1_PfpI

Protein Analysis

216

Amino Acids

24.54

Weight (kDa)

7.56

Isoelectric Point (pI)

33.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	1 - 195	2.8e-25	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	2 - 193	1.1e-32	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005848)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34020 AT4G34020 AT4G34020 AT4G34020
fragaria_vesca	FvH4_2g05880 FvH4_2g05880 FvH4_2g05880 FvH4_2g05880 FvH4_2g05880 FvH4_2g05880
malus_domestica	MD05G1082200.v1.1
prunus_persica	Prupe.8G126700_v2.0.a1 Prupe.8G126700_v2.0.a1
pyrus_communis	pycom03g18750 pycom05g07700
rosa_chinensis	RchiOBHm_Chr6g0257661
rosa_laevigata	RLG00000014715
rosa_multiflora	Rmu_co8071652.1_g000001 Rmu_co8413389.1_g000001 Rmu_sc0026590.1_g000001
rosa_rugosa	Rorug05G0569400 Rorug05G0569500 Rorug05G0569600
rosa_samantha	Rh6AG086100 Rh6BG080200 Rh6CG075200 Rh6DG072100
rosa_wichuraiana	Rw6G007710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	536, 549
AcuI	CTGAAG	1 cut(s)	408
AfaI	GTAC	1 cut(s)	509
AfiI	CCNNNNNNNGG	1 cut(s)	279
AgsI	TTSAA	6 cut(s)	217, 286, 536, 587, 599, 641
AluBI	AGCT	4 cut(s)	191, 211, 324, 386
AluI	AGCT	4 cut(s)	191, 211, 324, 386
Alw26I	GTCTC	1 cut(s)	607
AlwI	GGATC	2 cut(s)	536, 549
ApeKI	GCWGC	3 cut(s)	117, 120, 354
BamHI	GGATCC	1 cut(s)	541
BanII	GRGCYC	1 cut(s)	96
BbvI	GCAGC	3 cut(s)	129, 132, 341
BccI	CCATC	2 cut(s)	479, 553
BciVI	GTATCC	1 cut(s)	214
BcoDI	GTCTC	1 cut(s)	607
BfaI	CTAG	2 cut(s)	17, 243
BfmI	CTRYAG	2 cut(s)	319, 355
BfuI	GTATCC	1 cut(s)	214
BglI	GCCNNNNNGGC	1 cut(s)	413
BisI	GCNGC	3 cut(s)	118, 121, 355
BlsI	GCNGC	3 cut(s)	119, 122, 356
BmcAI	AGTACT	1 cut(s)	509
BmiI	GGNNCC	1 cut(s)	543
BmrI	ACTGGG	1 cut(s)	421
BmsI	GCATC	3 cut(s)	454, 498, 570
BmuI	ACTGGG	1 cut(s)	421
BsaJI	CCNNGG	1 cut(s)	75
Bsc4I	CCNNNNNNNGG	1 cut(s)	279
Bse1I	ACTGG	2 cut(s)	56, 416
Bse3DI	GCAATG	2 cut(s)	13, 486
BseDI	CCNNGG	1 cut(s)	75
BseGI	GGATG	1 cut(s)	490
BseLI	CCNNNNNNNGG	1 cut(s)	279
BseMI	GCAATG	2 cut(s)	13, 486
BseMII	CTCAG	1 cut(s)	618
BseNI	ACTGG	2 cut(s)	56, 416
BseRI	GAGGAG	2 cut(s)	125, 616
BseXI	GCAGC	3 cut(s)	129, 132, 341
BsgI	GTGCAG	1 cut(s)	136
BslI	CCNNNNNNNGG	1 cut(s)	279
BsmAI	GTCTC	1 cut(s)	607
BsmI	GAATGC	1 cut(s)	531
Bsp1286I	GDGCHC	1 cut(s)	96
Bsp143I	GATC	3 cut(s)	391, 472, 541
BspCNI	CTCAG	1 cut(s)	617
BspLI	GGNNCC	1 cut(s)	543
BspMAI	CTGCAG	1 cut(s)	359
BspPI	GGATC	2 cut(s)	536, 549
BsrDI	GCAATG	2 cut(s)	13, 486
BsrI	ACTGG	2 cut(s)	56, 416
BssECI	CCNNGG	1 cut(s)	75
BssMI	GATC	3 cut(s)	391, 472, 541
BssT1I	CCWWGG	1 cut(s)	75
Bst4CI	ACNGT	2 cut(s)	304, 595
BstDEI	CTNAG	2 cut(s)	604, 645
BstF5I	GGATG	1 cut(s)	490
BstKTI	GATC	3 cut(s)	394, 475, 544
BstMAI	GTCTC	1 cut(s)	607
BstMBI	GATC	3 cut(s)	391, 472, 541
BstMWI	GCNNNNNNNGC	2 cut(s)	188, 413
BstSFI	CTRYAG	2 cut(s)	319, 355
BstV1I	GCAGC	3 cut(s)	129, 132, 341
BstX2I	RGATCY	1 cut(s)	541
BstYI	RGATCY	1 cut(s)	541
BsuI	GTATCC	1 cut(s)	214
BtsCI	GGATG	1 cut(s)	490
BtsIMutI	CAGTG	4 cut(s)	309, 472, 591, 612
Csp6I	GTAC	1 cut(s)	508
CviAII	CATG	1 cut(s)	107
CviJI	RGCY	9 cut(s)	12, 94, 123, 148, 191, 211, 324, 386, 407
CviKI_1	RGCY	9 cut(s)	12, 94, 123, 148, 191, 211, 324, 386, 407
CviQI	GTAC	1 cut(s)	508
DdeI	CTNAG	2 cut(s)	604, 645
DpnI	GATC	3 cut(s)	393, 474, 543
DpnII	GATC	3 cut(s)	391, 472, 541
Eco130I	CCWWGG	1 cut(s)	75
Eco24I	GRGCYC	1 cut(s)	96
Eco57I	CTGAAG	1 cut(s)	408
EcoT14I	CCWWGG	1 cut(s)	75
EcoT38I	GRGCYC	1 cut(s)	96
ErhI	CCWWGG	1 cut(s)	75
FaeI	CATG	1 cut(s)	110
FatI	CATG	1 cut(s)	106
Fnu4HI	GCNGC	3 cut(s)	118, 121, 355
FokI	GGATG	1 cut(s)	497
FriOI	GRGCYC	1 cut(s)	96
Fsp4HI	GCNGC	3 cut(s)	118, 121, 355
FspBI	CTAG	2 cut(s)	17, 243
GluI	GCNGC	3 cut(s)	118, 121, 355
Hin1II	CATG	1 cut(s)	110
HindIII	AAGCTT	1 cut(s)	209
HinfI	GANTC	3 cut(s)	38, 170, 246
Hpy188I	TCNGA	2 cut(s)	223, 251
Hpy188III	TCNNGA	3 cut(s)	42, 164, 536
Hpy99I	CGWCG	1 cut(s)	170
HpyAV	CCTTC	3 cut(s)	34, 301, 581
HpyCH4III	ACNGT	2 cut(s)	304, 595
HpyCH4V	TGCA	8 cut(s)	86, 106, 117, 357, 445, 457, 521, 531
HpyF10VI	GCNNNNNNNGC	2 cut(s)	188, 413
HpyF3I	CTNAG	2 cut(s)	604, 645
Hsp92II	CATG	1 cut(s)	110
Kzo9I	GATC	3 cut(s)	391, 472, 541
LpnPI	CCDG	6 cut(s)	37, 288, 343, 396, 397, 461
Lsp1109I	GCAGC	3 cut(s)	129, 132, 341
LweI	GCATC	3 cut(s)	454, 498, 570
MaeI	CTAG	2 cut(s)	17, 243
MaeIII	GTNAC	3 cut(s)	137, 298, 467
MalI	GATC	3 cut(s)	393, 474, 543
MboI	GATC	3 cut(s)	391, 472, 541
MboII	GAAGA	2 cut(s)	152, 401
MfeI	CAATTG	1 cut(s)	421
MflI	RGATCY	1 cut(s)	541
MhlI	GDGCHC	1 cut(s)	96
MluCI	AATT	2 cut(s)	69, 421
MlyI	GAGTC	1 cut(s)	47
MmeI	TCCRAC	1 cut(s)	480
MnlI	CCTC	9 cut(s)	38, 83, 103, 159, 245, 532, 621, 634, 637
MseI	TTAA	1 cut(s)	144
MslI	CAYNNNNRTG	1 cut(s)	526
MspA1I	CMGCKG	1 cut(s)	386
MunI	CAATTG	1 cut(s)	421
Mva1269I	GAATGC	1 cut(s)	531
MwoI	GCNNNNNNNGC	2 cut(s)	188, 413
NdeII	GATC	3 cut(s)	391, 472, 541
NlaIII	CATG	1 cut(s)	110
NlaIV	GGNNCC	1 cut(s)	543
NmuCI	GTSAC	3 cut(s)	137, 298, 467
PctI	GAATGC	1 cut(s)	531
PfeI	GAWTC	2 cut(s)	170, 246
PkrI	GCNGC	3 cut(s)	119, 122, 356
PleI	GAGTC	1 cut(s)	46
PpsI	GAGTC	1 cut(s)	46
PspN4I	GGNNCC	1 cut(s)	543
PstI	CTGCAG	1 cut(s)	359
PsuI	RGATCY	1 cut(s)	541
PvuII	CAGCTG	1 cut(s)	386
RsaI	GTAC	1 cut(s)	509
RsaNI	GTAC	1 cut(s)	508
RseI	CAYNNNNRTG	1 cut(s)	526
SaqAI	TTAA	1 cut(s)	144
SatI	GCNGC	3 cut(s)	118, 121, 355
Sau3AI	GATC	3 cut(s)	391, 472, 541
ScaI	AGTACT	1 cut(s)	509
SchI	GAGTC	1 cut(s)	47
SduI	GDGCHC	1 cut(s)	96
SetI	ASST	8 cut(s)	26, 193, 213, 265, 312, 326, 388, 559
SfaNI	GCATC	3 cut(s)	454, 498, 570
SfcI	CTRYAG	2 cut(s)	319, 355
SmiMI	CAYNNNNRTG	1 cut(s)	526
Sse9I	AATT	2 cut(s)	69, 421
SspMI	CTAG	2 cut(s)	17, 243
StyI	CCWWGG	1 cut(s)	75
TaaI	ACNGT	2 cut(s)	304, 595
TaqI	TCGA	2 cut(s)	165, 232
TasI	AATT	2 cut(s)	69, 421
TatI	WGTACW	1 cut(s)	507
TfiI	GAWTC	2 cut(s)	170, 246
Tru1I	TTAA	1 cut(s)	144
Tru9I	TTAA	1 cut(s)	144
TscAI	CASTG	4 cut(s)	309, 472, 598, 612
TseFI	GTSAC	3 cut(s)	137, 298, 467
TseI	GCWGC	3 cut(s)	117, 120, 354
Tsp45I	GTSAC	3 cut(s)	137, 298, 467
TspDTI	ATGAA	2 cut(s)	384, 632
TspRI	CASTG	4 cut(s)	309, 472, 598, 612
XspI	CTAG	2 cut(s)	17, 243
ZrmI	AGTACT	1 cut(s)	509

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.