Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8071652.1

Orthogroup ID

OG0005848

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 553

Gene Structure 553 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8071652.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 347 bp

gaaatagtggggctgagcggctgagcaaatctagaattctaaagagtctcctcaaagaacaagaactagctggaagaatatatggagcagtctgttcctcatcagcaattctacttaagcagggcttactgaagggtaagaaagccactgcccatccttccattgcgagcaaacctacagatgagttggtgaacaacaccaaagtagtaattgatggtaacctgatcacaagcaggggacttgctactgttgcagaatttgcattggctattgtgagcaaactatatggtcatgcgagggcaagaagtgttgcagaaggccttgtttacgagtacccgaaaacttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009536 GO:0009657 GO:0009658 GO:0009987 GO:0016043 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DJ-1_PfpI

Protein Analysis

114

Amino Acids

12.12

Weight (kDa)

9.83

Isoelectric Point (pI)

17.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005848)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34020 AT4G34020 AT4G34020 AT4G34020
fragaria_vesca	FvH4_2g05880 FvH4_2g05880 FvH4_2g05880 FvH4_2g05880 FvH4_2g05880 FvH4_2g05880
malus_domestica	MD05G1082200.v1.1
prunus_persica	Prupe.8G126700_v2.0.a1 Prupe.8G126700_v2.0.a1
pyrus_communis	pycom03g18750 pycom05g07700
rosa_chinensis	RchiOBHm_Chr6g0257661
rosa_laevigata	RLG00000014715
rosa_multiflora	Rmu_co8071652.1_g000001 Rmu_co8413389.1_g000001 Rmu_sc0026590.1_g000001
rosa_rugosa	Rorug05G0569400 Rorug05G0569500 Rorug05G0569600
rosa_samantha	Rh6AG086100 Rh6BG080200 Rh6CG075200 Rh6DG072100
rosa_wichuraiana	Rw6G007710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	18
AciI	CCGC	1 cut(s)	18
AcsI	RAATTY	2 cut(s)	35, 256
AcuI	CTGAAG	1 cut(s)	151
AfaI	GTAC	1 cut(s)	334
AflII	CTTAAG	1 cut(s)	115
AluBI	AGCT	1 cut(s)	70
AluI	AGCT	1 cut(s)	70
Alw26I	GTCTC	1 cut(s)	52
AoxI	GGCC	1 cut(s)	318
ApoI	RAATTY	2 cut(s)	35, 256
AsuHPI	GGTGA	1 cut(s)	201
BccI	CCATC	2 cut(s)	161, 208
BclI	TGATCA	1 cut(s)	224
BcoDI	GTCTC	1 cut(s)	52
BfaI	CTAG	2 cut(s)	32, 67
BfmI	CTRYAG	1 cut(s)	176
BfrI	CTTAAG	1 cut(s)	115
BisI	GCNGC	1 cut(s)	19
BlpI	GCTNAGC	2 cut(s)	14, 22
BlsI	GCNGC	1 cut(s)	20
Bpu1102I	GCTNAGC	2 cut(s)	14, 22
Bse3DI	GCAATG	1 cut(s)	161
BseGI	GGATG	1 cut(s)	153
BseMI	GCAATG	1 cut(s)	161
BseMII	CTCAG	2 cut(s)	5, 13
BseRI	GAGGAG	1 cut(s)	40
BshFI	GGCC	1 cut(s)	320
BslFI	GGGAC	1 cut(s)	251
BsmAI	GTCTC	1 cut(s)	52
BsmFI	GGGAC	1 cut(s)	251
BsnI	GGCC	1 cut(s)	320
Bsp143I	GATC	1 cut(s)	224
Bsp1720I	GCTNAGC	2 cut(s)	14, 22
BspACI	CCGC	1 cut(s)	18
BspANI	GGCC	1 cut(s)	320
BspCNI	CTCAG	2 cut(s)	6, 14
BspTI	CTTAAG	1 cut(s)	115
BsrBI	CCGCTC	1 cut(s)	18
BsrDI	GCAATG	1 cut(s)	161
BssMI	GATC	1 cut(s)	224
Bst4CI	ACNGT	1 cut(s)	249
BstAFI	CTTAAG	1 cut(s)	115
BstAPI	GCANNNNNTGC	1 cut(s)	259
BstC8I	GCNNGC	1 cut(s)	168
BstDEI	CTNAG	3 cut(s)	14, 22, 344
BstEII	GGTNACC	1 cut(s)	217
BstF5I	GGATG	1 cut(s)	153
BstKTI	GATC	1 cut(s)	227
BstMAI	GTCTC	1 cut(s)	52
BstMBI	GATC	1 cut(s)	224
BstMWI	GCNNNNNNNGC	2 cut(s)	250, 259
BstPI	GGTNACC	1 cut(s)	217
BstSFI	CTRYAG	1 cut(s)	176
BsuRI	GGCC	1 cut(s)	320
BtsCI	GGATG	1 cut(s)	153
BtsI	GCAGTG	1 cut(s)	146
BtsIMutI	CAGTG	1 cut(s)	146
Cac8I	GCNNGC	1 cut(s)	168
Csp6I	GTAC	1 cut(s)	333
CviAII	CATG	1 cut(s)	292
CviJI	RGCY	7 cut(s)	13, 21, 70, 125, 145, 268, 320
CviKI_1	RGCY	7 cut(s)	13, 21, 70, 125, 145, 268, 320
CviQI	GTAC	1 cut(s)	333
DdeI	CTNAG	3 cut(s)	14, 22, 344
DpnI	GATC	1 cut(s)	226
DpnII	GATC	1 cut(s)	224
Eco147I	AGGCCT	1 cut(s)	320
Eco57I	CTGAAG	1 cut(s)	151
Eco91I	GGTNACC	1 cut(s)	217
EcoO65I	GGTNACC	1 cut(s)	217
EcoRI	GAATTC	1 cut(s)	35
FaeI	CATG	1 cut(s)	295
FaiI	YATR	5 cut(s)	81, 83, 285, 287, 293
FalI	AAGNNNNNCTT	2 cut(s)	109, 141
FaqI	GGGAC	1 cut(s)	251
FatI	CATG	1 cut(s)	291
FbaI	TGATCA	1 cut(s)	224
Fnu4HI	GCNGC	1 cut(s)	19
FokI	GGATG	1 cut(s)	140
Fsp4HI	GCNGC	1 cut(s)	19
FspBI	CTAG	2 cut(s)	32, 67
GluI	GCNGC	1 cut(s)	19
HaeIII	GGCC	1 cut(s)	320
Hin1II	CATG	1 cut(s)	295
HinfI	GANTC	1 cut(s)	45
HphI	GGTGA	1 cut(s)	201
Hpy166II	GTNNAC	2 cut(s)	192, 327
Hpy188III	TCNNGA	1 cut(s)	32
Hpy8I	GTNNAC	2 cut(s)	192, 327
HpyAV	CCTTC	3 cut(s)	126, 167, 310
HpyCH4III	ACNGT	1 cut(s)	249
HpyCH4V	TGCA	3 cut(s)	253, 262, 313
HpyF10VI	GCNNNNNNNGC	2 cut(s)	250, 259
HpyF3I	CTNAG	3 cut(s)	14, 22, 344
Hsp92II	CATG	1 cut(s)	295
Ksp22I	TGATCA	1 cut(s)	224
Kzo9I	GATC	1 cut(s)	224
LmnI	GCTCC	1 cut(s)	85
LpnPI	CCDG	4 cut(s)	56, 106, 219, 235
MaeI	CTAG	2 cut(s)	32, 67
MaeIII	GTNAC	1 cut(s)	217
MalI	GATC	1 cut(s)	226
MbiI	CCGCTC	1 cut(s)	18
MboI	GATC	1 cut(s)	224
MboII	GAAGA	1 cut(s)	86
MluCI	AATT	4 cut(s)	35, 107, 209, 256
MlyI	GAGTC	1 cut(s)	54
MnlI	CCTC	3 cut(s)	61, 108, 290
MseI	TTAA	1 cut(s)	116
MspCI	CTTAAG	1 cut(s)	115
MwoI	GCNNNNNNNGC	2 cut(s)	250, 259
NdeII	GATC	1 cut(s)	224
NlaIII	CATG	1 cut(s)	295
PceI	AGGCCT	1 cut(s)	320
PkrI	GCNGC	1 cut(s)	20
PleI	GAGTC	1 cut(s)	53
PpsI	GAGTC	1 cut(s)	53
PspEI	GGTNACC	1 cut(s)	217
RsaI	GTAC	1 cut(s)	334
RsaNI	GTAC	1 cut(s)	333
SaqAI	TTAA	1 cut(s)	116
SatI	GCNGC	1 cut(s)	19
Sau3AI	GATC	1 cut(s)	224
SchI	GAGTC	1 cut(s)	54
SetI	ASST	3 cut(s)	72, 177, 224
SfcI	CTRYAG	1 cut(s)	176
SmlI	CTYRAG	1 cut(s)	115
SmoI	CTYRAG	1 cut(s)	115
Sse9I	AATT	4 cut(s)	35, 107, 209, 256
SseBI	AGGCCT	1 cut(s)	320
SsiI	CCGC	1 cut(s)	18
SspMI	CTAG	2 cut(s)	32, 67
StuI	AGGCCT	1 cut(s)	320
TaaI	ACNGT	1 cut(s)	249
TasI	AATT	4 cut(s)	35, 107, 209, 256
TauI	GCSGC	1 cut(s)	21
Tru1I	TTAA	1 cut(s)	116
Tru9I	TTAA	1 cut(s)	116
TscAI	CASTG	1 cut(s)	153
TspRI	CASTG	1 cut(s)	153
Vha464I	CTTAAG	1 cut(s)	115
XapI	RAATTY	2 cut(s)	35, 256
XbaI	TCTAGA	1 cut(s)	31
XspI	CTAG	2 cut(s)	32, 67

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.