Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0005453

Physical Location & Seq

Genomic Coordinates Forward (+)

4903471 .. 4906350

Gene Structure 2880 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g05910.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2373 bp

ATGTTCAGTTTGGTGCCCACCTGCAAAGATGGCTTTGGAAATGAGACCAGAAGAGTTGATATCGGTCATCTATTTCAATCCTGCACAAAACTTCACCATGCAAAGCGTCTCCATGCTCTTCTTGTGGTGTCAGGAAAAGCTCAAGATATCTTTCTTTCTGCCAAACTTGTCAATCAGTATGCTTACCTTGGTGATGTCTCATTCTCACGCCGCGCTTTTGATTCGATGCCTAGAAAGGATGTCTATACCTGGAATTCGATGGTATCAGCATATGTTCGCAGCGGACGTTTCCAAGAAGCTGTTGATTGTTTCTCTCAATTTTTGGTAACCTCTGGTCTTCGACCTGATTTCTACACATTCCCTCCTGTCTTGAAAGCATGTGGGAATCTAAATGTTGGGAAGAAGATCCACAGTTGGCTCATAAAGCTGGGTTTGGAATGGGATGTTTTTGTGGCTGCTTCCTTGATCCATATGTATTCACGGTCTGGATTGATTAGCGTTGCTCGTAAATTGTTTGATGAGATGCCATCCCGGGATATGGGTTGTTGGAATGCAATGATTTCTGGGTTTTGTCAGAATGGGAATGCAGCGGATGCATTAGGTGTCTTGATTGAAATGAGATCGGAGGGTGTAAAGATGGATCCTATTACTGTTGCAAGTCTACTGACTGCTTGTGCACAATCAGATGATTCCTTAAGTGGGATCCTGATCCATCTGTATGTTGTAAAGCATGGACTAGAGTTTGATCAGTTTGTATGCAATGCCTTGATTAACATGTATGCTAAATTTGGTTGCTTGGGACGTGCCCAGAGGGTTTTTTATGAAATGGAGGTAAGAGATTTGGTGTCATGGAACTCAATAATTGCTGCAAATGAGCAGAATGGTGAGCCAATGGCTGCGCTAGGATTCTTCAACAGGATGCAACTATCTGGAGTTAAGCCTGATTACTTGACAGTAGTGAGTTTGGCTTCGATTATAGCTCAATTAAGTGATGCTGAAATGGGTAGGTCTGTTCATGGATTTATTTTGAGGAGAGACTGGTTCAAGGAAGATGTTGTTATTGGGAATGCAGTTGTGGACATGTATGCAAAGTTGGGTGCTATAGATTCTGCACGTACTGTCTTTGAAAGACTTCCTGTCAGGGATGTGGTTTCGTGGAATACTTTAATCACGGGTTACACTCAAAATGGCCTTGCAAGTGAGGCAAATGAAGTTTACTGTATGATGCAAGAGTGCGAAGAAATAATTCCAAACCAAGGAACTTGGGTTAGCATTCTACCTGCACATACCCATTTAGGGGCCTTGCAACAAGGGATGAAAATTCATGGGCGGGTGATCAAGAACCGTCTTTACTTGGATGTATTTGTGGGTACATGCTTGATTGACATGTATGGAAAATGTGGGAGGCTAGATGATGCATTGTCGTTATTCTACCAAGTGCCCAGATGTCCGGTCGCTTGGAATGCCATGATTTCCTGTCTTGGCGTTCATGGGCATGGCGAGAAAGCTGTGAAGTTATTCAAAGATATGATTGATGAGGGGGTTAAGCCAGATCACATAACCTTTGTATCTCTATTGGCAGCTTGTAGTCATTCAGGTTTGGTCAATAAGGGTGAATTGTACTTCCATATGATGCAGAAAGAGTATGGAATCAAGCCTGGTTTAAATCACTATGGCTGCATGGTAGATTTGCTTGGCAGAGCTGGGCATTTAGACAAGGCATATAGTTTTATTAAGACTATGCCTGTACAGCCTGATGCTTCTGTATGGGGGGCACTACTTGGTGCTTGTAGAATACATGGTAATGCTGAATTGGGGAAAGTTGCTTCAGAGGGCTTGTTTGCTGTTGATTCGGAGAATGTGGGCTACTATGTTTTGTTGTCAAATATATACGCAACAACCGGGAAATGGGAAGGTGTGGACAAAGTGAGATCTATGGCTAGAAACCGCGGACTGAGGAAGACTCCTGGGTGGAGCTCAATAGAAGTTAACAATAAAGTTGATGTCTTTTATAATGGGAACCAAACGCATCCACTATGCGAACAGATATACCAGAAGTTGGGGGAACTAACTGAGAAAATGAAGAGCCTTGGTTATGTTCCTGACTTCAGCTTTGTGTTGCAGGATGTCGAGGATGACGAAAAGGAGCATATCCTCAACAGTCATAGCGAGAGATTGGCAATTGCTTTTGGAATCATTAGCACACCTCCTAAAACCCCTATCCGAATCTTCAAAAACCTGAGGGTTTGCGGTGATTGCCACACTGTGACGAAACTCATATCAGTAATTACAGAGCGGGAGATCATTGTGAGAGATTCAAACCGCTTTCACCATTTCAAGGATGGAACTTGCTCTTGTGGCGATTATTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

791

Amino Acids

88.17

Weight (kDa)

7.1

Isoelectric Point (pI)

36.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	79 - 127	5.2e-07	PPR repeat family
PPR	PF01535	82 - 106	9.7e-06	PPR repeat
PPR_2	PF13041	179 - 226	9.4e-10	PPR repeat family
PPR_1	PF12854	179 - 207	9.2e-06	PPR repeat
PPR	PF01535	182 - 211	1.2e-07	PPR repeat
TPR_24	PF23276	183 - 274	1.4e-06	Fungal tetratrico peptide repeats
PPR_2	PF13041	280 - 319	1e-05	PPR repeat family
PPR_2	PF13041	381 - 426	9.7e-07	PPR repeat family
PPR	PF01535	384 - 412	1.3e-06	PPR repeat
PPR_2	PF13041	485 - 530	2.5e-12	PPR repeat family
PPR	PF01535	485 - 515	4.4e-08	PPR repeat
E_motif	PF20431	600 - 662	1.6e-15	E motif
DYW_deaminase	PF14432	698 - 790	1.5e-44	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0005453)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33990 AT4G33990
fragaria_vesca	FvH4_2g05910
malus_domestica	MD05G1081900.v1.1
prunus_persica	Prupe.8G126500_v2.0.a1 Prupe.8G126500_v2.0.a1 Prupe.8G126500_v2.0.a1 Prupe.8G126500_v2.0.a1 Prupe.8G126500_v2.0.a1 Prupe.8G126500_v2.0.a1 Prupe.8G126500_v2.0.a1
pyrus_communis	pycom05g07680
rosa_chinensis	RchiOBHm_Chr2g0134891 RchiOBHm_Chr6g0257591
rosa_laevigata	RLG00000014704 RLG00000014708
rosa_multiflora	Rmu_sc0004702.1_g000004
rosa_roxburghii	Rroxscaffold_7G00208820
rosa_rugosa	Rorug02G0320700 Rorug05G0570400
rosa_samantha	Rh2AG373000 Rh2CG356900 Rh6AG087200 Rh6BG080500 Rh6CG075800 Rh6DG072600
rosa_wichuraiana	Rw2G030350 Rw6G007750 Rw6G007790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2013
AarI	CACCTGC	1 cut(s)	29
Acc36I	ACCTGC	2 cut(s)	29, 1288
AccB1I	GGYRCC	1 cut(s)	13
AccB7I	CCANNNNNTGG	1 cut(s)	2059
AccBSI	CCGCTC	1 cut(s)	2296
AccI	GTMKAC	1 cut(s)	661
AccII	CGCG	2 cut(s)	213, 1950
AciI	CCGC	9 cut(s)	211, 282, 590, 1330, 1948, 1950, 2250, 2296, 2323
AclWI	GGATC	7 cut(s)	400, 460, 635, 648, 697, 703, 710
AcsI	RAATTY	3 cut(s)	253, 785, 1320
AcuI	CTGAAG	2 cut(s)	1812, 2092
AdeI	CACNNNGTG	1 cut(s)	2266
AfaI	GTAC	4 cut(s)	1117, 1372, 1622, 1749
AfiI	CCNNNNNNNGG	8 cut(s)	538, 699, 1256, 1296, 1297, 1908, 2059, 2338
AflII	CTTAAG	1 cut(s)	694
AflIII	ACRYGT	3 cut(s)	774, 1080, 1386
AhdI	GACNNNNNGTC	1 cut(s)	1136
AjiI	CACGTC	1 cut(s)	803
AjnI	CCWGG	3 cut(s)	248, 1657, 1966
AluBI	AGCT	9 cut(s)	140, 299, 427, 980, 1508, 1583, 1703, 1977, 2112
AluI	AGCT	9 cut(s)	140, 299, 427, 980, 1508, 1583, 1703, 1977, 2112
Alw21I	GWGCWC	2 cut(s)	679, 1979
Alw26I	GTCTC	4 cut(s)	38, 113, 202, 1029
Alw44I	GTGCAC	1 cut(s)	675
AlwI	GGATC	7 cut(s)	400, 460, 635, 648, 697, 703, 710
Ama87I	CYCGRG	1 cut(s)	531
AoxI	GGCC	2 cut(s)	1189, 1299
ApaLI	GTGCAC	1 cut(s)	675
ApeKI	GCWGC	7 cut(s)	279, 455, 587, 866, 896, 1580, 1677
ApoI	RAATTY	3 cut(s)	253, 785, 1320
ArsI	GACNNNNNNTTYG	2 cut(s)	2096, 2128
Asp700I	GAANNNNTTC	3 cut(s)	1131, 1245, 1517
AspLEI	GCGC	2 cut(s)	215, 901
AspS9I	GGNCC	1 cut(s)	1299
AsuC2I	CCSGG	3 cut(s)	532, 533, 1903
AsuHPI	GGTGA	7 cut(s)	86, 203, 896, 1345, 1625, 2264, 2321
AvaI	CYCGRG	1 cut(s)	531
AxyI	CCTNAGG	1 cut(s)	2240
BaeGI	GKGCMC	5 cut(s)	18, 679, 808, 1443, 1777
BaeI	ACNNNNGTAYC	2 cut(s)	1551, 1584
BamHI	GGATCC	2 cut(s)	640, 702
BanI	GGYRCC	1 cut(s)	13
BanII	GRGCYC	1 cut(s)	1979
BbsI	GAAGAC	2 cut(s)	329, 1967
Bbv12I	GWGCWC	2 cut(s)	679, 1979
BbvI	GCAGC	7 cut(s)	291, 442, 599, 853, 883, 1592, 1664
BccI	CCATC	6 cut(s)	23, 253, 535, 631, 720, 2336
BciT130I	CCWGG	3 cut(s)	250, 1659, 1968
BclI	TGATCA	2 cut(s)	745, 1335
BcnI	CCSGG	3 cut(s)	532, 533, 1903
BcoDI	GTCTC	4 cut(s)	38, 113, 202, 1029
BfaI	CTAG	5 cut(s)	231, 737, 902, 1409, 1941
BfmI	CTRYAG	1 cut(s)	1101
BfrI	CTTAAG	1 cut(s)	694
BfuAI	ACCTGC	2 cut(s)	29, 1288
BglII	AGATCT	1 cut(s)	1931
BisI	GCNGC	8 cut(s)	211, 280, 456, 588, 867, 897, 1581, 1678
BlsI	GCNGC	8 cut(s)	212, 281, 457, 589, 868, 898, 1582, 1679
Bme1390I	CCNGG	6 cut(s)	250, 532, 533, 1659, 1903, 1968
BmeRI	GACNNNNNGTC	1 cut(s)	1136
BmeT110I	CYCGRG	1 cut(s)	531
BmgBI	CACGTC	1 cut(s)	803
BmgT120I	GGNCC	1 cut(s)	1299
BmiI	GGNNCC	5 cut(s)	15, 642, 704, 1300, 2021
BmrFI	CCNGG	6 cut(s)	250, 532, 533, 1659, 1903, 1968
BpiI	GAAGAC	2 cut(s)	329, 1967
BplI	GAGNNNNNCTC	2 cut(s)	1948, 1980
BpmI	CTGGAG	1 cut(s)	951
BpuEI	CTTGAG	1 cut(s)	126
BpuMI	CCSGG	3 cut(s)	532, 533, 1903
BsaAI	YACGTR	1 cut(s)	1115
BsaBI	GATNNNNATC	1 cut(s)	707
BsaI	GGTCTC	1 cut(s)	38
BsaJI	CCNNGG	6 cut(s)	187, 531, 1255, 1948, 1967, 2089
BsaWI	WCCGGW	1 cut(s)	1450
BsaXI	ACNNNNNCTCC	2 cut(s)	346, 376
Bsc4I	CCNNNNNNNGG	8 cut(s)	538, 699, 1256, 1296, 1297, 1908, 2059, 2338
Bse1I	ACTGG	1 cut(s)	1043
Bse21I	CCTNAGG	1 cut(s)	2240
Bse3DI	GCAATG	2 cut(s)	561, 766
Bse8I	GATNNNNATC	1 cut(s)	707
BseBI	CCWGG	3 cut(s)	250, 1659, 1968
BseDI	CCNNGG	6 cut(s)	187, 531, 1255, 1948, 1967, 2089
BseJI	GATNNNNATC	1 cut(s)	707
BseLI	CCNNNNNNNGG	8 cut(s)	538, 699, 1256, 1296, 1297, 1908, 2059, 2338
BseMI	GCAATG	2 cut(s)	561, 766
BseMII	CTCAG	3 cut(s)	1946, 2064, 2231
BseNI	ACTGG	1 cut(s)	1043
BseRI	GAGGAG	1 cut(s)	1045
BseSI	GKGCMC	5 cut(s)	18, 679, 808, 1443, 1777
BseXI	GCAGC	7 cut(s)	291, 442, 599, 853, 883, 1592, 1664
BseYI	CCCAGC	2 cut(s)	427, 1703
BsgI	GTGCAG	3 cut(s)	67, 1095, 1266
Bsh1236I	CGCG	2 cut(s)	213, 1950
Bsh1285I	CGRYCG	1 cut(s)	1455
BshFI	GGCC	2 cut(s)	1191, 1301
BshNI	GGYRCC	1 cut(s)	13
BsiEI	CGRYCG	1 cut(s)	1455
BsiHKAI	GWGCWC	2 cut(s)	679, 1979
BsiHKCI	CYCGRG	1 cut(s)	531
BsiSI	CCGG	3 cut(s)	532, 1451, 1902
BslFI	GGGAC	1 cut(s)	813
BslI	CCNNNNNNNGG	8 cut(s)	538, 699, 1256, 1296, 1297, 1908, 2059, 2338
BsmAI	GTCTC	4 cut(s)	38, 113, 202, 1029
BsmBI	CGTCTC	1 cut(s)	113
BsmFI	GGGAC	1 cut(s)	813
BsmI	GAATGC	5 cut(s)	556, 589, 1072, 1272, 1468
BsnI	GGCC	2 cut(s)	1191, 1301
Bso31I	GGTCTC	1 cut(s)	38
BsoBI	CYCGRG	1 cut(s)	531
Bsp1286I	GDGCHC	6 cut(s)	18, 679, 808, 1443, 1777, 1979
Bsp1407I	TGTACA	1 cut(s)	1747
BspACI	CCGC	9 cut(s)	211, 282, 590, 1330, 1948, 1950, 2250, 2296, 2323
BspANI	GGCC	2 cut(s)	1191, 1301
BspCNI	CTCAG	3 cut(s)	1947, 2065, 2232
BspFNI	CGCG	2 cut(s)	213, 1950
BspLI	GGNNCC	5 cut(s)	15, 642, 704, 1300, 2021
BspMI	ACCTGC	2 cut(s)	29, 1288
BspPI	GGATC	7 cut(s)	400, 460, 635, 648, 697, 703, 710
BspQI	GCTCTTC	2 cut(s)	123, 2078
BspT107I	GGYRCC	1 cut(s)	13
BspTI	CTTAAG	1 cut(s)	694
BspTNI	GGTCTC	1 cut(s)	38
BsrBI	CCGCTC	1 cut(s)	2296
BsrDI	GCAATG	2 cut(s)	561, 766
BsrGI	TGTACA	1 cut(s)	1747
BsrI	ACTGG	1 cut(s)	1043
BssECI	CCNNGG	6 cut(s)	187, 531, 1255, 1948, 1967, 2089
BssT1I	CCWWGG	3 cut(s)	187, 1255, 2089
Bst2UI	CCWGG	3 cut(s)	250, 1659, 1968
Bst4CI	ACNGT	9 cut(s)	413, 483, 652, 955, 1120, 1220, 1346, 2162, 2266
Bst6I	CTCTTC	3 cut(s)	46, 123, 2078
BstAFI	CTTAAG	1 cut(s)	694
BstAPI	GCANNNNNTGC	1 cut(s)	593
BstAUI	TGTACA	1 cut(s)	1747
BstBAI	YACGTR	1 cut(s)	1115
BstDEI	CTNAG	3 cut(s)	1955, 2073, 2240
BstDSI	CCRYGG	1 cut(s)	1948
BstEII	GGTNACC	1 cut(s)	325
BstFNI	CGCG	2 cut(s)	213, 1950
BstHHI	GCGC	2 cut(s)	215, 901
BstMAI	GTCTC	4 cut(s)	38, 113, 202, 1029
BstMCI	CGRYCG	1 cut(s)	1455
BstMWI	GCNNNNNNNGC	8 cut(s)	30, 424, 593, 1202, 1463, 1750, 2256, 2358
BstNI	CCWGG	3 cut(s)	250, 1659, 1968
BstNSI	RCATGY	5 cut(s)	381, 778, 1084, 1377, 1390
BstPI	GGTNACC	1 cut(s)	325
BstSCI	CCNGG	6 cut(s)	248, 530, 531, 1657, 1901, 1966
BstSFI	CTRYAG	1 cut(s)	1101
BstSLI	GKGCMC	5 cut(s)	18, 679, 808, 1443, 1777
BstUI	CGCG	2 cut(s)	213, 1950
BstV1I	GCAGC	7 cut(s)	291, 442, 599, 853, 883, 1592, 1664
BstV2I	GAAGAC	2 cut(s)	329, 1967
BstX2I	RGATCY	4 cut(s)	405, 640, 702, 1931
BstYI	RGATCY	4 cut(s)	405, 640, 702, 1931
Bsu36I	CCTNAGG	1 cut(s)	2240
BsuRI	GGCC	2 cut(s)	1191, 1301
BtgI	CCRYGG	1 cut(s)	1948
BtrI	CACGTC	1 cut(s)	803
BtsIMutI	CAGTG	1 cut(s)	2262
BveI	ACCTGC	2 cut(s)	29, 1288
CfoI	GCGC	2 cut(s)	215, 901
Cfr13I	GGNCC	1 cut(s)	1299
Cfr42I	CCGCGG	1 cut(s)	1951
Cfr9I	CCCGGG	1 cut(s)	531
CseI	GACGC	1 cut(s)	95
Csp6I	GTAC	4 cut(s)	1116, 1371, 1621, 1748
CviQI	GTAC	4 cut(s)	1116, 1371, 1621, 1748
DdeI	CTNAG	3 cut(s)	1955, 2073, 2240
DraI	TTTAAA	1 cut(s)	1665
DraIII	CACNNNGTG	1 cut(s)	2266
DriI	GACNNNNNGTC	1 cut(s)	1136
Eam1104I	CTCTTC	3 cut(s)	46, 123, 2078
Eam1105I	GACNNNNNGTC	1 cut(s)	1136
EarI	CTCTTC	3 cut(s)	46, 123, 2078
Ecl136II	GAGCTC	1 cut(s)	1977
Eco130I	CCWWGG	3 cut(s)	187, 1255, 2089
Eco24I	GRGCYC	1 cut(s)	1979
Eco31I	GGTCTC	1 cut(s)	38
Eco32I	GATATC	2 cut(s)	61, 148
Eco53kI	GAGCTC	1 cut(s)	1977
Eco57I	CTGAAG	2 cut(s)	1812, 2092
Eco81I	CCTNAGG	1 cut(s)	2240
Eco88I	CYCGRG	1 cut(s)	531
Eco91I	GGTNACC	1 cut(s)	325
EcoICRI	GAGCTC	1 cut(s)	1977
EcoO109I	RGGNCCY	1 cut(s)	1299
EcoO65I	GGTNACC	1 cut(s)	325
EcoRI	GAATTC	1 cut(s)	253
EcoRII	CCWGG	3 cut(s)	248, 1657, 1966
EcoRV	GATATC	2 cut(s)	61, 148
EcoT14I	CCWWGG	3 cut(s)	187, 1255, 2089
EcoT22I	ATGCAT	2 cut(s)	598, 1420
EcoT38I	GRGCYC	1 cut(s)	1979
ErhI	CCWWGG	3 cut(s)	187, 1255, 2089
Esp3I	CGTCTC	1 cut(s)	113
FaqI	GGGAC	1 cut(s)	813
FauI	CCCGC	2 cut(s)	1323, 2289
FauNDI	CATATG	3 cut(s)	271, 471, 1629
FbaI	TGATCA	2 cut(s)	745, 1335
FblI	GTMKAC	1 cut(s)	661
Fnu4HI	GCNGC	8 cut(s)	211, 280, 456, 588, 867, 897, 1581, 1678
FriOI	GRGCYC	1 cut(s)	1979
Fsp4HI	GCNGC	8 cut(s)	211, 280, 456, 588, 867, 897, 1581, 1678
FspBI	CTAG	5 cut(s)	231, 737, 902, 1409, 1941
GlaI	GCGC	2 cut(s)	214, 900
GluI	GCNGC	8 cut(s)	211, 280, 456, 588, 867, 897, 1581, 1678
GsaI	CCCAGC	2 cut(s)	431, 1707
GsuI	CTGGAG	1 cut(s)	951
HaeIII	GGCC	2 cut(s)	1191, 1301
HapII	CCGG	3 cut(s)	532, 1451, 1902
HgaI	GACGC	1 cut(s)	95
HhaI	GCGC	2 cut(s)	215, 901
Hin6I	GCGC	2 cut(s)	213, 899
HinP1I	GCGC	2 cut(s)	213, 899
HincII	GTYRAC	1 cut(s)	1990
HindII	GTYRAC	1 cut(s)	1990
HpaI	GTTAAC	1 cut(s)	1990
HpaII	CCGG	3 cut(s)	532, 1451, 1902
HphI	GGTGA	7 cut(s)	86, 203, 896, 1345, 1625, 2264, 2321
Hpy166II	GTNNAC	6 cut(s)	662, 677, 1078, 1216, 1921, 1990
Hpy188I	TCNGA	6 cut(s)	576, 625, 685, 1831, 1855, 2225
Hpy188III	TCNNGA	9 cut(s)	132, 143, 370, 486, 607, 706, 930, 1339, 2102
Hpy8I	GTNNAC	6 cut(s)	662, 677, 1078, 1216, 1921, 1990
HpyAV	CCTTC	1 cut(s)	1907
HpyCH4III	ACNGT	9 cut(s)	413, 483, 652, 955, 1120, 1220, 1346, 2162, 2266
HpyCH4IV	ACGT	3 cut(s)	286, 802, 1114
HpyF10VI	GCNNNNNNNGC	8 cut(s)	30, 424, 593, 1202, 1463, 1750, 2256, 2358
HpyF3I	CTNAG	3 cut(s)	1955, 2073, 2240
HpySE526I	ACGT	3 cut(s)	286, 802, 1114
HspAI	GCGC	2 cut(s)	213, 899
Ksp22I	TGATCA	2 cut(s)	745, 1335
KspAI	GTTAAC	1 cut(s)	1990
KspI	CCGCGG	1 cut(s)	1951
LguI	GCTCTTC	2 cut(s)	123, 2078
LmnI	GCTCC	2 cut(s)	1974, 2146
Lsp1109I	GCAGC	7 cut(s)	291, 442, 599, 853, 883, 1592, 1664
MaeI	CTAG	5 cut(s)	231, 737, 902, 1409, 1941
MaeII	ACGT	3 cut(s)	286, 802, 1114
MaeIII	GTNAC	3 cut(s)	325, 1175, 2266
MbiI	CCGCTC	1 cut(s)	2296
MfeI	CAATTG	1 cut(s)	2181
MflI	RGATCY	4 cut(s)	405, 640, 702, 1931
MhlI	GDGCHC	6 cut(s)	18, 679, 808, 1443, 1777, 1979
MlyI	GAGTC	1 cut(s)	1957
MmeI	TCCRAC	1 cut(s)	527
Mph1103I	ATGCAT	2 cut(s)	598, 1420
MroXI	GAANNNNTTC	3 cut(s)	1131, 1245, 1517
MseI	TTAA	9 cut(s)	695, 771, 936, 986, 1166, 1545, 1664, 1734, 1989
MslI	CAYNNNNRTG	3 cut(s)	717, 1494, 1803
MspA1I	CMGCKG	3 cut(s)	282, 590, 1950
MspCI	CTTAAG	1 cut(s)	694
MspI	CCGG	3 cut(s)	532, 1451, 1902
MspR9I	CCNGG	6 cut(s)	250, 532, 533, 1659, 1903, 1968
MunI	CAATTG	1 cut(s)	2181
Mva1269I	GAATGC	5 cut(s)	556, 589, 1072, 1272, 1468
MvaI	CCWGG	3 cut(s)	250, 1659, 1968
MvnI	CGCG	2 cut(s)	213, 1950
MwoI	GCNNNNNNNGC	8 cut(s)	30, 424, 593, 1202, 1463, 1750, 2256, 2358
NciI	CCSGG	3 cut(s)	532, 533, 1903
NdeI	CATATG	3 cut(s)	271, 471, 1629
NlaIV	GGNNCC	5 cut(s)	15, 642, 704, 1300, 2021
NmuCI	GTSAC	1 cut(s)	2266
NsiI	ATGCAT	2 cut(s)	598, 1420
NspI	RCATGY	5 cut(s)	381, 778, 1084, 1377, 1390
PaqCI	CACCTGC	1 cut(s)	29
PciI	ACATGT	3 cut(s)	774, 1080, 1386
PciSI	GCTCTTC	2 cut(s)	123, 2078
PcsI	WCGNNNNNNNCGW	2 cut(s)	283, 2136
PctI	GAATGC	5 cut(s)	556, 589, 1072, 1272, 1468
PdmI	GAANNNNTTC	3 cut(s)	1131, 1245, 1517
PflMI	CCANNNNNTGG	1 cut(s)	2059
PkrI	GCNGC	8 cut(s)	212, 281, 457, 589, 868, 898, 1582, 1679
PleI	GAGTC	1 cut(s)	1957
PpsI	GAGTC	1 cut(s)	1957
Ppu21I	YACGTR	1 cut(s)	1115
PscI	ACATGT	3 cut(s)	774, 1080, 1386
PsiI	TTATAA	1 cut(s)	2013
Psp124BI	GAGCTC	1 cut(s)	1979
Psp6I	CCWGG	3 cut(s)	248, 1657, 1966
PspEI	GGTNACC	1 cut(s)	325
PspFI	CCCAGC	2 cut(s)	427, 1703
PspGI	CCWGG	3 cut(s)	248, 1657, 1966
PspN4I	GGNNCC	5 cut(s)	15, 642, 704, 1300, 2021
PspPI	GGNCC	1 cut(s)	1299
PsrI	GAACNNNNNNTAC	2 cut(s)	1334, 1366
PsuI	RGATCY	4 cut(s)	405, 640, 702, 1931
RsaI	GTAC	4 cut(s)	1117, 1372, 1622, 1749
RsaNI	GTAC	4 cut(s)	1116, 1371, 1621, 1748
RseI	CAYNNNNRTG	3 cut(s)	717, 1494, 1803
SacI	GAGCTC	1 cut(s)	1979
SacII	CCGCGG	1 cut(s)	1951
SapI	GCTCTTC	2 cut(s)	123, 2078
SaqAI	TTAA	9 cut(s)	695, 771, 936, 986, 1166, 1545, 1664, 1734, 1989
SatI	GCNGC	8 cut(s)	211, 280, 456, 588, 867, 897, 1581, 1678
Sau96I	GGNCC	1 cut(s)	1299
SchI	GAGTC	1 cut(s)	1957
ScrFI	CCNGG	6 cut(s)	250, 532, 533, 1659, 1903, 1968
SduI	GDGCHC	6 cut(s)	18, 679, 808, 1443, 1777, 1979
SfcI	CTRYAG	1 cut(s)	1101
Sfr303I	CCGCGG	1 cut(s)	1951
SgrBI	CCGCGG	1 cut(s)	1951
SmaI	CCCGGG	1 cut(s)	533
SmiMI	CAYNNNNRTG	3 cut(s)	717, 1494, 1803
SmlI	CTYRAG	2 cut(s)	141, 694
SmoI	CTYRAG	2 cut(s)	141, 694
SsiI	CCGC	9 cut(s)	211, 282, 590, 1330, 1948, 1950, 2250, 2296, 2323
SspMI	CTAG	5 cut(s)	231, 737, 902, 1409, 1941
SstI	GAGCTC	1 cut(s)	1979
StyD4I	CCNGG	6 cut(s)	248, 530, 531, 1657, 1901, 1966
StyI	CCWWGG	3 cut(s)	187, 1255, 2089
TaaI	ACNGT	9 cut(s)	413, 483, 652, 955, 1120, 1220, 1346, 2162, 2266
TaiI	ACGT	3 cut(s)	289, 805, 1117
TaqI	TCGA	5 cut(s)	224, 257, 340, 971, 2130
TaqII	GACCGA	1 cut(s)	53
TatI	WGTACW	2 cut(s)	1620, 1747
TauI	GCSGC	1 cut(s)	213
Tru1I	TTAA	9 cut(s)	695, 771, 936, 986, 1166, 1545, 1664, 1734, 1989
Tru9I	TTAA	9 cut(s)	695, 771, 936, 986, 1166, 1545, 1664, 1734, 1989
TscAI	CASTG	1 cut(s)	2269
TseFI	GTSAC	1 cut(s)	2266
TseI	GCWGC	7 cut(s)	279, 455, 587, 866, 896, 1580, 1677
Tsp45I	GTSAC	1 cut(s)	2266
TspDTI	ATGAA	7 cut(s)	837, 1004, 1224, 1313, 1331, 1478, 2096
TspMI	CCCGGG	1 cut(s)	531
TspRI	CASTG	1 cut(s)	2269
Van91I	CCANNNNNTGG	1 cut(s)	2059
Vha464I	CTTAAG	1 cut(s)	694
VneI	GTGCAC	1 cut(s)	675
XapI	RAATTY	3 cut(s)	253, 785, 1320
XceI	RCATGY	5 cut(s)	381, 778, 1084, 1377, 1390
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2339
XmaI	CCCGGG	1 cut(s)	531
XmiI	GTMKAC	1 cut(s)	661
XmnI	GAANNNNTTC	3 cut(s)	1131, 1245, 1517
XspI	CTAG	5 cut(s)	231, 737, 902, 1409, 1941
Zsp2I	ATGCAT	2 cut(s)	598, 1420

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.