Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0005453

Physical Location & Seq

Genomic Coordinates Forward (+)

12535495 .. 12540239

Gene Structure 4745 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG080500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2463 bp

ATGTTCAGTTTGGTGCCCACCTGCAAAGGTAGGCATGCTTGCAAAAGTTTCCCCTCACTGCAAGTCTGTTACCAATTCTTCTCATCAGCTACTAATTCATTGCCTTTTGTATCGGATGGCTTTGGAACTGAGAACAAAAGAACTGATTTCAGTCTTCTATTTCAATCCTGCACAAAACTTCACCATGCGAAGTGTCTCCATGCTTTTCTTGTGGTGTCAGGAAAAGCTCAAGATATTATTTTTTCCTCCAGGCTAGTCAATCGGTATGCCTACCTTGGTGATGTTTCATTCTCACGTCGCACTTTTGATTCGATGCCTAGAAAGGATGTCTATACCTGGAATTCAATGGTGTCTGCATATGTTCGCAGTGGACGTTTCCGAGAAGCTGTAGACTGTTTCTCTCATTTTTTGTTGACCCCTGGTCTGCGACCTGATTTCTACACTTTTCCTCCTGTCTTGAAAGCGTGCGGGAATCTAAATGTTGGGAAGAAGATACATTGTTGGCTTATAAAGCTGGGTTTGGAATGGGATGTCTTTGTGTCTGCGTCCTTGATCCATATGTATTCACGGTTTGGATTTATTAGCGTTGCTCGTAAATTGTTTGATGAGATGCCATTCCGGGATATGGGTTGTTGGAATGCAATGATTTCTGGGTTTTGTCAGAATGGGAATGCAGCAGATGCATTAGATGTCTTGATTGAAATGAGATCGGAGGGTGTAAAGATGGATCCTGTAACTGTTGCAAGTCTACTGACTGCTTGTGCACAATCAGATGATTCCTTAAGCGGGATGCTGATTCATTTGTATGTCATAAAGCATGGACTACAGTTTGATCTGTTCGTATGCAATGCCTTGATTAACATGTATGCTAAATTTGGTTGCTTGGGACATGCACAGAGGGTTTTTTATGAAATGCAGGTAAGAGATTTGGTGTCATGGAACTCAATAATTGCTGCAAATGAGCAGAATGATAAGCCGATGACTGCGCTTGGATTCTTCAACAGGATGCAACTATCCGGAGTCAAGCCTGATTGGTTAACACTAGTGAGTTTGGCTTCCATTATAGCTCAATTAAATGATGCTGAAATGAGTAGGTCTGTTCATGGATTCATTTTGAGGAGAGATTGGTTCAAGGAAGATGTTGTTATTGGAAATGCAGTTGTGGACATGTATGCAAAGTTGGGTGCTATAGATTCTGCACGTACTGTTTTTGAAGGACTTCCTGTCAAGGATGTGGTTTCATGGAATACTTTGATCACAGGTTACACTCAAAATGGTCTTGCAAGTGAGGCGAATGAAGTGTACTGTATGATGCAAGAGTGCAAAGAAATAATTCCAAACCAAGGAACTTGGGTTAGCATTCTACCAGCATATACACACTTAGGGGCCTTGCAACAAGGGATGAGAATTCATGGGCGGGTGATCAAGAACTCTCTCTACTTGGATGTATTTGTGGGTACCTGCTTGATTGACATGTATGGAAAATGTGGGAGACTAGATGATGCATTATCATTATTCTACCAAGTGCCCAGAATGAGTTCGGTCACTTGGAATGCCATGATTTCCTGTCTTGGGGTTCATGGGCATGGTGGGAAAGCTGTGAAGCTATTCAAAAATATGATAGATGAAGGGGTTAAGCCAGATCATGTAACCTTTGTATCTCTAATGGCAGCTTGTAGTCATTCAGGTTTGGTCAATGAGGGTGAATTGTACTTTCATATGATGCAGAAAGAGTATGGAATCAAGCCTGGTTTGAAGCACTACGGCTGCATGGTAGATTTACTTGGCAGAGCTGGGCATTTAGACAAGGCATATAGTTTCATTAAGACTATGCCTGTACAGCCTGATGCTTCTGTTTGGGGGGCACTACTTGGTGCTTGTAGAATACATGGGAATGCTGAATTGGGGAAAATTGCTTCAGAAGGCTTGTTTGAAGTCGATTCGGAGAATGTGGGCTACTATGTTTTGTTGTCAAATATATACGCAACAACTGGGAAATGGGAAGGTGTGGATAAAGTGAGATCTATGGCTAGAAACCGCGGACTGAGGAAGACTCCCGGGTGGAGCTCAATAGAAGTTAACAATAAAGTTGATGTCTTTTATACTGGGAACCAAACGCATCCATTATGCGAACAGATATACCAGAAGTTGAGGGAACTAACTGAGAAAATGAAGAGCCTTGGTTATGTTCCAGACTTCAGCTTTGTATTGCAGGATGTCGAGGATGACGAGAAAGAGCATATCCTCACAAGTCATAGTGAGAGATTGGCAATTGCTTTTGGAATCATTAGCACGCCTCCTAAAACTCCCATTCGGATCTTCAAGAACCTGAGGGTTTGCGGTGATTGCCACAATGTGACGAAACTCATATCAGTAATTACGGAGAGGGAGATCATTGTGAGGGATTCAAACCGTTTCCACCATTTCAAGGATGGAACTTGCTCTTGTGGGGATTATTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

820

Amino Acids

92.03

Weight (kDa)

8.04

Isoelectric Point (pI)

37.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	108 - 156	8.1e-06	PPR repeat family
PPR_2	PF13041	208 - 255	1.1e-10	PPR repeat family
PPR_1	PF12854	208 - 236	3.7e-06	PPR repeat
PPR	PF01535	211 - 240	5.9e-08	PPR repeat
TPR_24	PF23276	213 - 303	1e-06	Fungal tetratrico peptide repeats
PPR_2	PF13041	410 - 457	3.2e-07	PPR repeat family
PPR	PF01535	413 - 441	1.2e-06	PPR repeat
PPR_2	PF13041	513 - 560	3.3e-12	PPR repeat family
PPR	PF01535	515 - 545	3.3e-07	PPR repeat
E_motif	PF20431	630 - 692	3.3e-17	E motif
DYW_deaminase	PF14432	728 - 820	1.1e-44	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0005453)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33990 AT4G33990
fragaria_vesca	FvH4_2g05910
malus_domestica	MD05G1081900.v1.1
prunus_persica	Prupe.8G126500_v2.0.a1 Prupe.8G126500_v2.0.a1 Prupe.8G126500_v2.0.a1 Prupe.8G126500_v2.0.a1 Prupe.8G126500_v2.0.a1 Prupe.8G126500_v2.0.a1 Prupe.8G126500_v2.0.a1
pyrus_communis	pycom05g07680
rosa_chinensis	RchiOBHm_Chr2g0134891 RchiOBHm_Chr6g0257591
rosa_laevigata	RLG00000014704 RLG00000014708
rosa_multiflora	Rmu_sc0004702.1_g000004
rosa_roxburghii	Rroxscaffold_7G00208820
rosa_rugosa	Rorug02G0320700 Rorug05G0570400
rosa_samantha	Rh2AG373000 Rh2CG356900 Rh6AG087200 Rh6BG080500 Rh6CG075800 Rh6DG072600
rosa_wichuraiana	Rw2G030350 Rw6G007750 Rw6G007790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	509
AarI	CACCTGC	1 cut(s)	29
Acc36I	ACCTGC	3 cut(s)	29, 907, 1469
Acc65I	GGTACC	1 cut(s)	1457
AccB1I	GGYRCC	2 cut(s)	13, 1457
AccI	GTMKAC	2 cut(s)	390, 748
AccII	CGCG	1 cut(s)	2040
AccIII	TCCGGA	1 cut(s)	1016
AciI	CCGC	6 cut(s)	468, 786, 1417, 2038, 2040, 2340
AclWI	GGATC	4 cut(s)	547, 722, 735, 2324
AcsI	RAATTY	3 cut(s)	340, 872, 1407
AcuI	CTGAAG	2 cut(s)	1902, 2182
AdeI	CACNNNGTG	1 cut(s)	2356
AfaI	GTAC	5 cut(s)	1204, 1304, 1459, 1712, 1839
AfiI	CCNNNNNNNGG	5 cut(s)	625, 786, 1343, 1572, 2428
AflII	CTTAAG	1 cut(s)	781
AflIII	ACRYGT	3 cut(s)	861, 1167, 1473
AhdI	GACNNNNNGTC	2 cut(s)	420, 1223
AhlI	ACTAGT	1 cut(s)	1042
AjiI	CACGTC	1 cut(s)	296
AjnI	CCWGG	4 cut(s)	248, 335, 418, 1747
AjuI	GAANNNNNNNTTGG	2 cut(s)	1886, 1918
Alw21I	GWGCWC	2 cut(s)	766, 2069
Alw26I	GTCTC	2 cut(s)	200, 1486
Alw44I	GTGCAC	1 cut(s)	762
AlwI	GGATC	4 cut(s)	547, 722, 735, 2324
Ama87I	CYCGRG	1 cut(s)	2057
Aor13HI	TCCGGA	1 cut(s)	1016
AoxI	GGCC	1 cut(s)	1386
ApaLI	GTGCAC	1 cut(s)	762
ApeKI	GCWGC	4 cut(s)	674, 953, 1670, 1767
ApoI	RAATTY	3 cut(s)	340, 872, 1407
ArsI	GACNNNNNNTTYG	2 cut(s)	2186, 2218
Asp700I	GAANNNNTTC	4 cut(s)	1218, 1332, 1537, 1607
Asp718I	GGTACC	1 cut(s)	1457
AspLEI	GCGC	1 cut(s)	988
AspS9I	GGNCC	1 cut(s)	1386
AsuC2I	CCSGG	3 cut(s)	620, 2058, 2059
AsuHPI	GGTGA	5 cut(s)	173, 290, 1432, 1715, 2354
AvaI	CYCGRG	1 cut(s)	2057
AxyI	CCTNAGG	1 cut(s)	2330
BaeGI	GKGCMC	4 cut(s)	18, 766, 1530, 1867
BaeI	ACNNNNGTAYC	2 cut(s)	1641, 1674
BamHI	GGATCC	1 cut(s)	727
BanI	GGYRCC	2 cut(s)	13, 1457
BanII	GRGCYC	1 cut(s)	2069
BbsI	GAAGAC	2 cut(s)	146, 2057
Bbv12I	GWGCWC	2 cut(s)	766, 2069
BbvI	GCAGC	4 cut(s)	686, 940, 1682, 1754
BccI	CCATC	3 cut(s)	110, 718, 2426
BceAI	ACGGC	1 cut(s)	1780
BciT130I	CCWGG	4 cut(s)	250, 337, 420, 1749
BclI	TGATCA	2 cut(s)	1254, 1422
BcnI	CCSGG	3 cut(s)	620, 2058, 2059
BcoDI	GTCTC	2 cut(s)	200, 1486
BcuI	ACTAGT	1 cut(s)	1042
BfaI	CTAG	5 cut(s)	254, 318, 1043, 1496, 2031
BfmI	CTRYAG	3 cut(s)	387, 824, 1188
BfrI	CTTAAG	1 cut(s)	781
BfuAI	ACCTGC	3 cut(s)	29, 907, 1469
BglII	AGATCT	1 cut(s)	2021
BisI	GCNGC	4 cut(s)	675, 954, 1671, 1768
BlsI	GCNGC	4 cut(s)	676, 955, 1672, 1769
Bme1390I	CCNGG	7 cut(s)	250, 337, 420, 620, 1749, 2058, 2059
BmeRI	GACNNNNNGTC	2 cut(s)	420, 1223
BmeT110I	CYCGRG	1 cut(s)	2057
BmgBI	CACGTC	1 cut(s)	296
BmgT120I	GGNCC	1 cut(s)	1386
BmiI	GGNNCC	5 cut(s)	15, 729, 1387, 1459, 2111
BmrFI	CCNGG	7 cut(s)	250, 337, 420, 620, 1749, 2058, 2059
BmrI	ACTGGG	2 cut(s)	2001, 2115
BmuI	ACTGGG	2 cut(s)	2001, 2115
BpiI	GAAGAC	2 cut(s)	146, 2057
BplI	GAGNNNNNCTC	2 cut(s)	2038, 2070
BpmI	CTGGAG	1 cut(s)	232
BpuEI	CTTGAG	1 cut(s)	213
BpuMI	CCSGG	3 cut(s)	620, 2058, 2059
BsaAI	YACGTR	1 cut(s)	1202
BsaJI	CCNNGG	6 cut(s)	274, 418, 1342, 2038, 2057, 2179
BsaWI	WCCGGW	1 cut(s)	1016
BsaXI	ACNNNNNCTCC	2 cut(s)	433, 463
Bsc4I	CCNNNNNNNGG	5 cut(s)	625, 786, 1343, 1572, 2428
Bse1I	ACTGG	2 cut(s)	1996, 2110
Bse21I	CCTNAGG	1 cut(s)	2330
Bse3DI	GCAATG	3 cut(s)	98, 648, 853
BseAI	TCCGGA	1 cut(s)	1016
BseBI	CCWGG	4 cut(s)	250, 337, 420, 1749
BseDI	CCNNGG	6 cut(s)	274, 418, 1342, 2038, 2057, 2179
BseLI	CCNNNNNNNGG	5 cut(s)	625, 786, 1343, 1572, 2428
BseMI	GCAATG	3 cut(s)	98, 648, 853
BseMII	CTCAG	4 cut(s)	120, 2036, 2154, 2321
BseNI	ACTGG	2 cut(s)	1996, 2110
BseRI	GAGGAG	1 cut(s)	1132
BseSI	GKGCMC	4 cut(s)	18, 766, 1530, 1867
BseXI	GCAGC	4 cut(s)	686, 940, 1682, 1754
BseYI	CCCAGC	2 cut(s)	514, 1793
BsgI	GTGCAG	2 cut(s)	154, 1182
Bsh1236I	CGCG	1 cut(s)	2040
BshFI	GGCC	1 cut(s)	1388
BshNI	GGYRCC	2 cut(s)	13, 1457
BsiHKAI	GWGCWC	2 cut(s)	766, 2069
BsiHKCI	CYCGRG	1 cut(s)	2057
BsiSI	CCGG	3 cut(s)	619, 1017, 2058
BslFI	GGGAC	1 cut(s)	900
BslI	CCNNNNNNNGG	5 cut(s)	625, 786, 1343, 1572, 2428
BsmAI	GTCTC	2 cut(s)	200, 1486
BsmFI	GGGAC	1 cut(s)	900
BsmI	GAATGC	5 cut(s)	643, 676, 1359, 1558, 1900
BsnI	GGCC	1 cut(s)	1388
BsoBI	CYCGRG	1 cut(s)	2057
Bsp1286I	GDGCHC	5 cut(s)	18, 766, 1530, 1867, 2069
Bsp13I	TCCGGA	1 cut(s)	1016
Bsp1407I	TGTACA	1 cut(s)	1837
BspACI	CCGC	6 cut(s)	468, 786, 1417, 2038, 2040, 2340
BspANI	GGCC	1 cut(s)	1388
BspCNI	CTCAG	4 cut(s)	121, 2037, 2155, 2322
BspEI	TCCGGA	1 cut(s)	1016
BspFNI	CGCG	1 cut(s)	2040
BspLI	GGNNCC	5 cut(s)	15, 729, 1387, 1459, 2111
BspMI	ACCTGC	3 cut(s)	29, 907, 1469
BspPI	GGATC	4 cut(s)	547, 722, 735, 2324
BspQI	GCTCTTC	1 cut(s)	2168
BspT107I	GGYRCC	2 cut(s)	13, 1457
BspTI	CTTAAG	1 cut(s)	781
BsrDI	GCAATG	3 cut(s)	98, 648, 853
BsrGI	TGTACA	1 cut(s)	1837
BsrI	ACTGG	2 cut(s)	1996, 2110
BssECI	CCNNGG	6 cut(s)	274, 418, 1342, 2038, 2057, 2179
BssT1I	CCWWGG	3 cut(s)	274, 1342, 2179
Bst2UI	CCWGG	4 cut(s)	250, 337, 420, 1749
Bst4CI	ACNGT	7 cut(s)	395, 570, 739, 828, 1207, 1307, 2414
Bst6I	CTCTTC	1 cut(s)	2168
BstAFI	CTTAAG	1 cut(s)	781
BstAPI	GCANNNNNTGC	1 cut(s)	680
BstAUI	TGTACA	1 cut(s)	1837
BstBAI	YACGTR	1 cut(s)	1202
BstC8I	GCNNGC	4 cut(s)	36, 40, 466, 2294
BstDEI	CTNAG	5 cut(s)	129, 1381, 2045, 2163, 2330
BstDSI	CCRYGG	1 cut(s)	2038
BstFNI	CGCG	1 cut(s)	2040
BstHHI	GCGC	1 cut(s)	988
BstMAI	GTCTC	2 cut(s)	200, 1486
BstMWI	GCNNNNNNNGC	5 cut(s)	511, 680, 1289, 1840, 2346
BstNI	CCWGG	4 cut(s)	250, 337, 420, 1749
BstNSI	RCATGY	5 cut(s)	38, 865, 893, 1171, 1477
BstSCI	CCNGG	7 cut(s)	248, 335, 418, 618, 1747, 2056, 2057
BstSFI	CTRYAG	3 cut(s)	387, 824, 1188
BstSLI	GKGCMC	4 cut(s)	18, 766, 1530, 1867
BstUI	CGCG	1 cut(s)	2040
BstV1I	GCAGC	4 cut(s)	686, 940, 1682, 1754
BstV2I	GAAGAC	2 cut(s)	146, 2057
BstX2I	RGATCY	3 cut(s)	727, 2021, 2316
BstYI	RGATCY	3 cut(s)	727, 2021, 2316
Bsu36I	CCTNAGG	1 cut(s)	2330
BsuRI	GGCC	1 cut(s)	1388
BtgI	CCRYGG	1 cut(s)	2038
BtrI	CACGTC	1 cut(s)	296
BtsI	GCAGTG	2 cut(s)	56, 373
BtsIMutI	CAGTG	2 cut(s)	56, 373
BveI	ACCTGC	3 cut(s)	29, 907, 1469
Cac8I	GCNNGC	4 cut(s)	36, 40, 466, 2294
CfoI	GCGC	1 cut(s)	988
Cfr13I	GGNCC	1 cut(s)	1386
Cfr42I	CCGCGG	1 cut(s)	2041
Cfr9I	CCCGGG	1 cut(s)	2057
CseI	GACGC	1 cut(s)	534
Csp6I	GTAC	5 cut(s)	1203, 1303, 1458, 1711, 1838
CviQI	GTAC	5 cut(s)	1203, 1303, 1458, 1711, 1838
DdeI	CTNAG	5 cut(s)	129, 1381, 2045, 2163, 2330
DraIII	CACNNNGTG	1 cut(s)	2356
DriI	GACNNNNNGTC	2 cut(s)	420, 1223
Eam1104I	CTCTTC	1 cut(s)	2168
Eam1105I	GACNNNNNGTC	2 cut(s)	420, 1223
EarI	CTCTTC	1 cut(s)	2168
Ecl136II	GAGCTC	1 cut(s)	2067
Eco130I	CCWWGG	3 cut(s)	274, 1342, 2179
Eco24I	GRGCYC	1 cut(s)	2069
Eco53kI	GAGCTC	1 cut(s)	2067
Eco57I	CTGAAG	2 cut(s)	1902, 2182
Eco81I	CCTNAGG	1 cut(s)	2330
Eco88I	CYCGRG	1 cut(s)	2057
EcoICRI	GAGCTC	1 cut(s)	2067
EcoO109I	RGGNCCY	1 cut(s)	1386
EcoRI	GAATTC	2 cut(s)	340, 1407
EcoRII	CCWGG	4 cut(s)	248, 335, 418, 1747
EcoT14I	CCWWGG	3 cut(s)	274, 1342, 2179
EcoT22I	ATGCAT	2 cut(s)	685, 1507
EcoT38I	GRGCYC	1 cut(s)	2069
ErhI	CCWWGG	3 cut(s)	274, 1342, 2179
FaqI	GGGAC	1 cut(s)	900
FauI	CCCGC	3 cut(s)	461, 779, 1410
FauNDI	CATATG	3 cut(s)	358, 558, 1719
FbaI	TGATCA	2 cut(s)	1254, 1422
FblI	GTMKAC	2 cut(s)	390, 748
Fnu4HI	GCNGC	4 cut(s)	675, 954, 1671, 1768
FriOI	GRGCYC	1 cut(s)	2069
Fsp4HI	GCNGC	4 cut(s)	675, 954, 1671, 1768
FspBI	CTAG	5 cut(s)	254, 318, 1043, 1496, 2031
GlaI	GCGC	1 cut(s)	987
GluI	GCNGC	4 cut(s)	675, 954, 1671, 1768
GsaI	CCCAGC	2 cut(s)	518, 1797
GsuI	CTGGAG	1 cut(s)	232
HaeIII	GGCC	1 cut(s)	1388
HapII	CCGG	3 cut(s)	619, 1017, 2058
HgaI	GACGC	1 cut(s)	534
HhaI	GCGC	1 cut(s)	988
Hin6I	GCGC	1 cut(s)	986
HinP1I	GCGC	1 cut(s)	986
HincII	GTYRAC	3 cut(s)	414, 1038, 2080
HindII	GTYRAC	3 cut(s)	414, 1038, 2080
HpaI	GTTAAC	2 cut(s)	1038, 2080
HpaII	CCGG	3 cut(s)	619, 1017, 2058
HphI	GGTGA	5 cut(s)	173, 290, 1432, 1715, 2354
Hpy166II	GTNNAC	9 cut(s)	371, 391, 414, 749, 764, 1038, 1165, 1303, 2080
Hpy188I	TCNGA	8 cut(s)	115, 380, 663, 712, 772, 1921, 1945, 2316
Hpy188III	TCNNGA	8 cut(s)	219, 230, 457, 694, 1017, 1426, 2192, 2323
Hpy8I	GTNNAC	9 cut(s)	371, 391, 414, 749, 764, 1038, 1165, 1303, 2080
Hpy99I	CGWCG	1 cut(s)	300
HpyAV	CCTTC	4 cut(s)	1208, 1622, 1916, 1997
HpyCH4III	ACNGT	7 cut(s)	395, 570, 739, 828, 1207, 1307, 2414
HpyCH4IV	ACGT	3 cut(s)	295, 373, 1201
HpyF10VI	GCNNNNNNNGC	5 cut(s)	511, 680, 1289, 1840, 2346
HpyF3I	CTNAG	5 cut(s)	129, 1381, 2045, 2163, 2330
HpySE526I	ACGT	3 cut(s)	295, 373, 1201
HspAI	GCGC	1 cut(s)	986
Kpn2I	TCCGGA	1 cut(s)	1016
KpnI	GGTACC	1 cut(s)	1461
Ksp22I	TGATCA	2 cut(s)	1254, 1422
KspAI	GTTAAC	2 cut(s)	1038, 2080
KspI	CCGCGG	1 cut(s)	2041
LguI	GCTCTTC	1 cut(s)	2168
LmnI	GCTCC	1 cut(s)	2064
Lsp1109I	GCAGC	4 cut(s)	686, 940, 1682, 1754
MaeI	CTAG	5 cut(s)	254, 318, 1043, 1496, 2031
MaeII	ACGT	3 cut(s)	295, 373, 1201
MaeIII	GTNAC	6 cut(s)	68, 733, 1262, 1543, 1648, 2356
MboII	GAAGA	9 cut(s)	70, 146, 499, 502, 988, 1148, 2062, 2185, 2311
MfeI	CAATTG	1 cut(s)	2271
MflI	RGATCY	3 cut(s)	727, 2021, 2316
MhlI	GDGCHC	5 cut(s)	18, 766, 1530, 1867, 2069
MlyI	GAGTC	2 cut(s)	1029, 2047
MmeI	TCCRAC	1 cut(s)	614
Mph1103I	ATGCAT	2 cut(s)	685, 1507
MroI	TCCGGA	1 cut(s)	1016
MroXI	GAANNNNTTC	4 cut(s)	1218, 1332, 1537, 1607
MseI	TTAA	7 cut(s)	782, 858, 1037, 1073, 1635, 1824, 2079
MslI	CAYNNNNRTG	3 cut(s)	804, 1584, 1893
MspA1I	CMGCKG	1 cut(s)	2040
MspCI	CTTAAG	1 cut(s)	781
MspI	CCGG	3 cut(s)	619, 1017, 2058
MspR9I	CCNGG	7 cut(s)	250, 337, 420, 620, 1749, 2058, 2059
MunI	CAATTG	1 cut(s)	2271
Mva1269I	GAATGC	5 cut(s)	643, 676, 1359, 1558, 1900
MvaI	CCWGG	4 cut(s)	250, 337, 420, 1749
MvnI	CGCG	1 cut(s)	2040
MwoI	GCNNNNNNNGC	5 cut(s)	511, 680, 1289, 1840, 2346
NciI	CCSGG	3 cut(s)	620, 2058, 2059
NdeI	CATATG	3 cut(s)	358, 558, 1719
NlaIV	GGNNCC	5 cut(s)	15, 729, 1387, 1459, 2111
NmuCI	GTSAC	2 cut(s)	1543, 2356
NsiI	ATGCAT	2 cut(s)	685, 1507
NspI	RCATGY	5 cut(s)	38, 865, 893, 1171, 1477
PaeI	GCATGC	1 cut(s)	38
PaqCI	CACCTGC	1 cut(s)	29
PciI	ACATGT	3 cut(s)	861, 1167, 1473
PciSI	GCTCTTC	1 cut(s)	2168
PcsI	WCGNNNNNNNCGW	2 cut(s)	370, 2226
PctI	GAATGC	5 cut(s)	643, 676, 1359, 1558, 1900
PdmI	GAANNNNTTC	4 cut(s)	1218, 1332, 1537, 1607
PfoI	TCCNGGA	1 cut(s)	618
PkrI	GCNGC	4 cut(s)	676, 955, 1672, 1769
PleI	GAGTC	2 cut(s)	1028, 2047
PpsI	GAGTC	2 cut(s)	1028, 2047
Ppu21I	YACGTR	1 cut(s)	1202
PscI	ACATGT	3 cut(s)	861, 1167, 1473
PsiI	TTATAA	1 cut(s)	509
Psp124BI	GAGCTC	1 cut(s)	2069
Psp6I	CCWGG	4 cut(s)	248, 335, 418, 1747
PspFI	CCCAGC	2 cut(s)	514, 1793
PspGI	CCWGG	4 cut(s)	248, 335, 418, 1747
PspN4I	GGNNCC	5 cut(s)	15, 729, 1387, 1459, 2111
PspPI	GGNCC	1 cut(s)	1386
PsrI	GAACNNNNNNTAC	2 cut(s)	1421, 1453
PsuI	RGATCY	3 cut(s)	727, 2021, 2316
RsaI	GTAC	5 cut(s)	1204, 1304, 1459, 1712, 1839
RsaNI	GTAC	5 cut(s)	1203, 1303, 1458, 1711, 1838
RseI	CAYNNNNRTG	3 cut(s)	804, 1584, 1893
SacI	GAGCTC	1 cut(s)	2069
SacII	CCGCGG	1 cut(s)	2041
SapI	GCTCTTC	1 cut(s)	2168
SaqAI	TTAA	7 cut(s)	782, 858, 1037, 1073, 1635, 1824, 2079
SatI	GCNGC	4 cut(s)	675, 954, 1671, 1768
Sau96I	GGNCC	1 cut(s)	1386
SchI	GAGTC	2 cut(s)	1029, 2047
ScrFI	CCNGG	7 cut(s)	250, 337, 420, 620, 1749, 2058, 2059
SduI	GDGCHC	5 cut(s)	18, 766, 1530, 1867, 2069
SfcI	CTRYAG	3 cut(s)	387, 824, 1188
Sfr303I	CCGCGG	1 cut(s)	2041
SgrBI	CCGCGG	1 cut(s)	2041
SmaI	CCCGGG	1 cut(s)	2059
SmiMI	CAYNNNNRTG	3 cut(s)	804, 1584, 1893
SmlI	CTYRAG	2 cut(s)	228, 781
SmoI	CTYRAG	2 cut(s)	228, 781
SpeI	ACTAGT	1 cut(s)	1042
SphI	GCATGC	1 cut(s)	38
SsiI	CCGC	6 cut(s)	468, 786, 1417, 2038, 2040, 2340
SspMI	CTAG	5 cut(s)	254, 318, 1043, 1496, 2031
SstI	GAGCTC	1 cut(s)	2069
StyD4I	CCNGG	7 cut(s)	248, 335, 418, 618, 1747, 2056, 2057
StyI	CCWWGG	3 cut(s)	274, 1342, 2179
TaaI	ACNGT	7 cut(s)	395, 570, 739, 828, 1207, 1307, 2414
TaiI	ACGT	3 cut(s)	298, 376, 1204
TaqI	TCGA	3 cut(s)	311, 1938, 2220
TaqII	GACCGA	1 cut(s)	1531
TatI	WGTACW	3 cut(s)	1302, 1710, 1837
Tru1I	TTAA	7 cut(s)	782, 858, 1037, 1073, 1635, 1824, 2079
Tru9I	TTAA	7 cut(s)	782, 858, 1037, 1073, 1635, 1824, 2079
TscAI	CASTG	2 cut(s)	63, 373
TseFI	GTSAC	2 cut(s)	1543, 2356
TseI	GCWGC	4 cut(s)	674, 953, 1670, 1767
Tsp45I	GTSAC	2 cut(s)	1543, 2356
TspGWI	ACGGA	1 cut(s)	2396
TspMI	CCCGGG	1 cut(s)	2057
TspRI	CASTG	2 cut(s)	63, 373
Vha464I	CTTAAG	1 cut(s)	781
VneI	GTGCAC	1 cut(s)	762
XapI	RAATTY	3 cut(s)	340, 872, 1407
XceI	RCATGY	5 cut(s)	38, 865, 893, 1171, 1477
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2429
XmaI	CCCGGG	1 cut(s)	2057
XmiI	GTMKAC	2 cut(s)	390, 748
XmnI	GAANNNNTTC	4 cut(s)	1218, 1332, 1537, 1607
XspI	CTAG	5 cut(s)	254, 318, 1043, 1496, 2031
Zsp2I	ATGCAT	2 cut(s)	685, 1507

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.