Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0005453

Physical Location & Seq

Genomic Coordinates Reverse (-)

56542790 .. 56545769

Gene Structure 2980 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000014704

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2337 bp

ATGTTCAGTTTGGTGCCCACCTGCAAAGGTAGGCATGCTTGCAAAAGTTTCCCCTCACTGCGAGTCTGTTATCAATTCTTCTCATCAGCTACTAATTCATTGCCTTTTGTATCGGATGGCTTTGGAACTGAGAACAAAAGAACTGATTTCGGTCTTCTATTTCAATCCTGCAAAAAACTTCACCATGCAAAGTGTCTTCATGCTTTTCTTGTGGTGTCAGGAAAAGCTCAAGATATTATTTTTTCCTCCAGGCTAGTCAATCGGTATGCCTTCCTTGGTGATGTTTCATTCTCACGCCGCACTTTTGATTTGATGCCTAGAAAGGATGTCTATACCTGGAATTCAATGGTGTCTGCATATGTTCGCAGTGGACGTTTCCGAGAAGCTGTAGACTGTTTCTCTGATTTTTTGTTGACCCCTGGTCTGCGACCTGATTTCTACACTTTTCCTCCTGTCTTGAAAGCGTGTGGGAATCTAAATGTTGGGAAGAAGATACACTGTTGGCTTATAAAGCTGGGTTTGGAATGGGATGTCTTTGTGGCTGCTTCCTTGATCCATATGTATTCACGGTTTGGATTTATTAGCATTGCTCGTAAATTGTTTGATGAGATGCCATTCCGGGATATGGGTTGTTGGAATGCAATGATTTCTGGGTTTTGTCAGAATGGGAATGCAGCAGATGCATTAGATGTCTTGATTGAAATGAGATCGGTGGGTGTAAAGATGGATCCTGTAACTGTTGCAAGTCTACTGACTGCTTGTGCACAATCAGATGATTCCTTAAGCGGGATGCTGATTCATTTGTATGTCATAAAGCATGGACTAGAGTTTGATCTGTTTAATGATGAGCCGATGACTGCGCTTGGATTCTTCAACAGGATGCAACTATCCAGAGTTAAGCCTGATTGGCTGACATTAGTGAGTTTGGCTTCCATTATAGCTCAGTTAAATGATGCTGAAATGAGTAGCGCTGTTCATGGATTCATTTTGAGGAGAGATTGGTTCAAGGAAGATGTTGTTATTGGAAATGCAGTTGTGGACATGTATGCAAAGTTGGGTGCTATAGATTCTGCACGTACTGTTTTTGAAGGACTTCCTGTCAAGGATGTGGTTTCATGGAATACTTTGATCACAGGTTACACCCAAAATGGTCTTGCAAGTGAGGCGAATGAAGTGTACTGTATGATGCAAGAGTGCAAAGAAATAATTCCAAACCAAGGAACTTGGGTTAGCATTCTACCAGCATATACCCATTTAGGGGCCTTGCAACAAGGGATGAGAATTCATGGGCGGGTGATCAAGAACTGTCTCTACGTGGATGTATTTGTGGGTACCTGCTTGATTGACATGTATGGAAAATGTGGGAGACTAGATGATGCATTATCGTTATTCTACGTAGTGCCCAGAATGAGTTCAGTCACTTGGAATGCCGTGATTTCCTGTCTTGGAGTTCATGGGCATGGTGGGAAAGTTGTGAAGCTATTCAAAGATATGATAGATGAGGGGGTTAAGCCAGATCATGTAACCTTTGTATCTCTAATGGCAGCTTGTAGTCATTCAGGTATGGTCAATGAGGGTGAATTGTACTTTCATATGATGCAGAAAGAGTACGGAATCAAGCCTGGTTTAAAGCACTACGGCTGTATGGTAGATTTACTTGGCAGAGCTGGGCATTTAGACAAGGCATATAGTTTTATTAAGACTATGCCTGTACAGCCTGATGCTTCTGTTTGGGGGGCACTACTTGGTGCGTGTCGAATACATGGGAATGCCGAATTGGGGAAAATTGCTTCAGAAGGCTTGTTTGAAGTTGATTCGGAGAATGTGGGCTACTATGTTTTGTTGTCAAATATATATGCAACAACCGGGAAATGGGAAGGTGTGGATAAAGTGAGATCTATGGCTAGAAACCGGGGACTGAGGAAGACTCCCGGGTGGAGCTCAATAGAAGTTAACAATAAAGTTGATGTCTTTTATACTGGGAACCAAACGCATCCATTATGCGAACAGATATACCAGAAGCTGAGGGAACTAACTGAGAAAATGAAGAGCCTTGGTTATGTTCCAGACTTCAGCTTTGTGTTGCAGGATGTCGAGGATGACGAGAAAGAGCATATCCTCACCAGTCATAGTGAGAGATTGGCGATTGCTTTTGGAATCATTAGCACGCCTCCTAAAACTCCCATTCGGATCTTCAAGAACCTGAGGGTTTGTGGTGATTGCCACAATGTGACGAAACTCATATCAGTAATAGCGGAGAGGGAGATCATTGTGAGGGATTCAAACCGTTTCCACCATTTCAAGGATGGAACTTGCTCTTGTGGGGATTATTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

779

Amino Acids

87.2

Weight (kDa)

7.73

Isoelectric Point (pI)

36.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	108 - 156	1.9e-06	PPR repeat family
PPR	PF01535	111 - 135	8.1e-06	PPR repeat
PPR_2	PF13041	208 - 255	4.4e-10	PPR repeat family
PPR_1	PF12854	208 - 236	3.5e-06	PPR repeat
PPR	PF01535	211 - 240	2.9e-07	PPR repeat
PPR_2	PF13041	368 - 415	3e-07	PPR repeat family
PPR	PF01535	371 - 399	1.1e-06	PPR repeat
PPR_2	PF13041	471 - 518	3.6e-11	PPR repeat family
PPR	PF01535	473 - 503	3.5e-06	PPR repeat
E_motif	PF20431	588 - 650	3.1e-17	E motif
DYW_deaminase	PF14432	686 - 778	1.2e-44	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005453)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33990 AT4G33990
fragaria_vesca	FvH4_2g05910
malus_domestica	MD05G1081900.v1.1
prunus_persica	Prupe.8G126500_v2.0.a1 Prupe.8G126500_v2.0.a1 Prupe.8G126500_v2.0.a1 Prupe.8G126500_v2.0.a1 Prupe.8G126500_v2.0.a1 Prupe.8G126500_v2.0.a1 Prupe.8G126500_v2.0.a1
pyrus_communis	pycom05g07680
rosa_chinensis	RchiOBHm_Chr2g0134891 RchiOBHm_Chr6g0257591
rosa_laevigata	RLG00000014704 RLG00000014708
rosa_multiflora	Rmu_sc0004702.1_g000004
rosa_roxburghii	Rroxscaffold_7G00208820
rosa_rugosa	Rorug02G0320700 Rorug05G0570400
rosa_samantha	Rh2AG373000 Rh2CG356900 Rh6AG087200 Rh6BG080500 Rh6CG075800 Rh6DG072600
rosa_wichuraiana	Rw2G030350 Rw6G007750 Rw6G007790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	509
AarI	CACCTGC	1 cut(s)	29
Acc36I	ACCTGC	2 cut(s)	29, 1343
Acc65I	GGTACC	1 cut(s)	1331
AccB1I	GGYRCC	2 cut(s)	13, 1331
AccI	GTMKAC	2 cut(s)	390, 748
AciI	CCGC	4 cut(s)	298, 786, 1291, 2255
AclWI	GGATC	4 cut(s)	547, 722, 735, 2198
AcsI	RAATTY	2 cut(s)	340, 1281
AcuI	CTGAAG	2 cut(s)	1776, 2056
AdeI	CACNNNGTG	1 cut(s)	2230
AfaI	GTAC	6 cut(s)	1078, 1178, 1333, 1586, 1610, 1713
AfeI	AGCGCT	1 cut(s)	970
AfiI	CCNNNNNNNGG	8 cut(s)	625, 786, 1217, 1257, 1258, 1779, 1872, 2302
AflII	CTTAAG	1 cut(s)	781
AflIII	ACRYGT	2 cut(s)	1041, 1347
AhdI	GACNNNNNGTC	2 cut(s)	420, 1097
AjnI	CCWGG	4 cut(s)	248, 335, 418, 1621
AjuI	GAANNNNNNNTTGG	2 cut(s)	1760, 1792
Alw21I	GWGCWC	2 cut(s)	766, 1943
Alw26I	GTCTC	2 cut(s)	1313, 1360
Alw44I	GTGCAC	1 cut(s)	762
AlwI	GGATC	4 cut(s)	547, 722, 735, 2198
AlwNI	CAGNNNCTG	1 cut(s)	2023
Ama87I	CYCGRG	1 cut(s)	1931
Aor51HI	AGCGCT	1 cut(s)	970
AoxI	GGCC	1 cut(s)	1260
ApaLI	GTGCAC	1 cut(s)	762
ApeKI	GCWGC	3 cut(s)	542, 674, 1544
ApoI	RAATTY	2 cut(s)	340, 1281
ArsI	GACNNNNNNTTYG	2 cut(s)	2060, 2092
Asp700I	GAANNNNTTC	4 cut(s)	1092, 1206, 1411, 1481
Asp718I	GGTACC	1 cut(s)	1331
AspLEI	GCGC	2 cut(s)	862, 971
AspS9I	GGNCC	1 cut(s)	1260
AsuC2I	CCSGG	5 cut(s)	620, 1867, 1913, 1932, 1933
AsuHPI	GGTGA	6 cut(s)	173, 290, 1306, 1589, 2113, 2228
AvaI	CYCGRG	1 cut(s)	1931
AxyI	CCTNAGG	1 cut(s)	2204
BaeGI	GKGCMC	4 cut(s)	18, 766, 1404, 1741
BaeI	ACNNNNGTAYC	2 cut(s)	1515, 1548
BamHI	GGATCC	1 cut(s)	727
BanI	GGYRCC	2 cut(s)	13, 1331
BanII	GRGCYC	1 cut(s)	1943
BbsI	GAAGAC	3 cut(s)	146, 188, 1931
Bbv12I	GWGCWC	2 cut(s)	766, 1943
BbvCI	CCTCAGC	1 cut(s)	2024
BbvI	GCAGC	3 cut(s)	529, 686, 1556
BccI	CCATC	3 cut(s)	110, 718, 2300
BceAI	ACGGC	2 cut(s)	1415, 1654
BciT130I	CCWGG	4 cut(s)	250, 337, 420, 1623
BclI	TGATCA	2 cut(s)	1128, 1296
BcnI	CCSGG	5 cut(s)	620, 1867, 1913, 1932, 1933
BcoDI	GTCTC	2 cut(s)	1313, 1360
BfaI	CTAG	5 cut(s)	254, 318, 824, 1370, 1905
BfmI	CTRYAG	2 cut(s)	387, 1062
BfoI	RGCGCY	1 cut(s)	972
BfrI	CTTAAG	1 cut(s)	781
BfuAI	ACCTGC	2 cut(s)	29, 1343
BglI	GCCNNNNNGGC	1 cut(s)	907
BglII	AGATCT	1 cut(s)	1895
BisI	GCNGC	4 cut(s)	298, 543, 675, 1545
BlsI	GCNGC	4 cut(s)	299, 544, 676, 1546
Bme1390I	CCNGG	9 cut(s)	250, 337, 420, 620, 1623, 1867, 1913, 1932, 1933
BmeRI	GACNNNNNGTC	2 cut(s)	420, 1097
BmeT110I	CYCGRG	1 cut(s)	1931
BmgT120I	GGNCC	1 cut(s)	1260
BmiI	GGNNCC	5 cut(s)	15, 729, 1261, 1333, 1985
BmrFI	CCNGG	9 cut(s)	250, 337, 420, 620, 1623, 1867, 1913, 1932, 1933
BmrI	ACTGGG	1 cut(s)	1989
BmuI	ACTGGG	1 cut(s)	1989
BpiI	GAAGAC	3 cut(s)	146, 188, 1931
BplI	GAGNNNNNCTC	2 cut(s)	1912, 1944
BpmI	CTGGAG	1 cut(s)	232
Bpu10I	CCTNAGC	1 cut(s)	2024
BpuEI	CTTGAG	1 cut(s)	213
BpuMI	CCSGG	5 cut(s)	620, 1867, 1913, 1932, 1933
BsaAI	YACGTR	3 cut(s)	1076, 1315, 1396
BsaJI	CCNNGG	6 cut(s)	274, 418, 1216, 1912, 1931, 2053
BsaXI	ACNNNNNCTCC	2 cut(s)	433, 463
Bsc4I	CCNNNNNNNGG	8 cut(s)	625, 786, 1217, 1257, 1258, 1779, 1872, 2302
Bse1I	ACTGG	2 cut(s)	1984, 2124
Bse21I	CCTNAGG	1 cut(s)	2204
Bse3DI	GCAATG	3 cut(s)	98, 585, 648
BseBI	CCWGG	4 cut(s)	250, 337, 420, 1623
BseDI	CCNNGG	6 cut(s)	274, 418, 1216, 1912, 1931, 2053
BseLI	CCNNNNNNNGG	8 cut(s)	625, 786, 1217, 1257, 1258, 1779, 1872, 2302
BseMI	GCAATG	3 cut(s)	98, 585, 648
BseMII	CTCAG	6 cut(s)	120, 956, 1910, 2015, 2028, 2195
BseNI	ACTGG	2 cut(s)	1984, 2124
BseRI	GAGGAG	1 cut(s)	1006
BseSI	GKGCMC	4 cut(s)	18, 766, 1404, 1741
BseXI	GCAGC	3 cut(s)	529, 686, 1556
BseYI	CCCAGC	2 cut(s)	514, 1667
BsgI	GTGCAG	1 cut(s)	1056
BshFI	GGCC	1 cut(s)	1262
BshNI	GGYRCC	2 cut(s)	13, 1331
BsiHKAI	GWGCWC	2 cut(s)	766, 1943
BsiHKCI	CYCGRG	1 cut(s)	1931
BsiSI	CCGG	4 cut(s)	619, 1866, 1912, 1932
BslFI	GGGAC	1 cut(s)	1929
BslI	CCNNNNNNNGG	8 cut(s)	625, 786, 1217, 1257, 1258, 1779, 1872, 2302
BsmAI	GTCTC	2 cut(s)	1313, 1360
BsmFI	GGGAC	1 cut(s)	1929
BsmI	GAATGC	5 cut(s)	643, 676, 1233, 1432, 1774
BsnI	GGCC	1 cut(s)	1262
BsoBI	CYCGRG	1 cut(s)	1931
Bsp1286I	GDGCHC	5 cut(s)	18, 766, 1404, 1741, 1943
Bsp1407I	TGTACA	1 cut(s)	1711
BspACI	CCGC	4 cut(s)	298, 786, 1291, 2255
BspANI	GGCC	1 cut(s)	1262
BspCNI	CTCAG	6 cut(s)	121, 955, 1911, 2016, 2029, 2196
BspLI	GGNNCC	5 cut(s)	15, 729, 1261, 1333, 1985
BspMI	ACCTGC	2 cut(s)	29, 1343
BspPI	GGATC	4 cut(s)	547, 722, 735, 2198
BspQI	GCTCTTC	1 cut(s)	2042
BspT107I	GGYRCC	2 cut(s)	13, 1331
BspTI	CTTAAG	1 cut(s)	781
BsrDI	GCAATG	3 cut(s)	98, 585, 648
BsrGI	TGTACA	1 cut(s)	1711
BsrI	ACTGG	2 cut(s)	1984, 2124
BssECI	CCNNGG	6 cut(s)	274, 418, 1216, 1912, 1931, 2053
BssT1I	CCWWGG	3 cut(s)	274, 1216, 2053
Bst2UI	CCWGG	4 cut(s)	250, 337, 420, 1623
Bst4CI	ACNGT	8 cut(s)	395, 500, 570, 739, 1081, 1181, 1307, 2288
Bst6I	CTCTTC	1 cut(s)	2042
BstAFI	CTTAAG	1 cut(s)	781
BstAPI	GCANNNNNTGC	1 cut(s)	680
BstAUI	TGTACA	1 cut(s)	1711
BstBAI	YACGTR	3 cut(s)	1076, 1315, 1396
BstC8I	GCNNGC	3 cut(s)	36, 40, 2168
BstDEI	CTNAG	6 cut(s)	129, 942, 1919, 2024, 2037, 2204
BstH2I	RGCGCY	1 cut(s)	972
BstHHI	GCGC	2 cut(s)	862, 971
BstMAI	GTCTC	2 cut(s)	1313, 1360
BstMWI	GCNNNNNNNGC	5 cut(s)	511, 680, 907, 1163, 1714
BstNI	CCWGG	4 cut(s)	250, 337, 420, 1623
BstNSI	RCATGY	3 cut(s)	38, 1045, 1351
BstSCI	CCNGG	9 cut(s)	248, 335, 418, 618, 1621, 1865, 1911, 1930, 1931
BstSFI	CTRYAG	2 cut(s)	387, 1062
BstSLI	GKGCMC	4 cut(s)	18, 766, 1404, 1741
BstSNI	TACGTA	1 cut(s)	1396
BstV1I	GCAGC	3 cut(s)	529, 686, 1556
BstV2I	GAAGAC	3 cut(s)	146, 188, 1931
BstX2I	RGATCY	3 cut(s)	727, 1895, 2190
BstYI	RGATCY	3 cut(s)	727, 1895, 2190
Bsu36I	CCTNAGG	1 cut(s)	2204
BsuRI	GGCC	1 cut(s)	1262
BtsI	GCAGTG	2 cut(s)	56, 373
BtsIMutI	CAGTG	3 cut(s)	56, 373, 496
BveI	ACCTGC	2 cut(s)	29, 1343
Cac8I	GCNNGC	3 cut(s)	36, 40, 2168
CaiI	CAGNNNCTG	1 cut(s)	2023
CfoI	GCGC	2 cut(s)	862, 971
Cfr13I	GGNCC	1 cut(s)	1260
Cfr9I	CCCGGG	1 cut(s)	1931
Csp6I	GTAC	6 cut(s)	1077, 1177, 1332, 1585, 1609, 1712
CviQI	GTAC	6 cut(s)	1077, 1177, 1332, 1585, 1609, 1712
DdeI	CTNAG	6 cut(s)	129, 942, 1919, 2024, 2037, 2204
DraI	TTTAAA	1 cut(s)	1629
DraIII	CACNNNGTG	1 cut(s)	2230
DriI	GACNNNNNGTC	2 cut(s)	420, 1097
Eam1104I	CTCTTC	1 cut(s)	2042
Eam1105I	GACNNNNNGTC	2 cut(s)	420, 1097
EarI	CTCTTC	1 cut(s)	2042
Ecl136II	GAGCTC	1 cut(s)	1941
Eco105I	TACGTA	1 cut(s)	1396
Eco130I	CCWWGG	3 cut(s)	274, 1216, 2053
Eco24I	GRGCYC	1 cut(s)	1943
Eco47III	AGCGCT	1 cut(s)	970
Eco53kI	GAGCTC	1 cut(s)	1941
Eco57I	CTGAAG	2 cut(s)	1776, 2056
Eco81I	CCTNAGG	1 cut(s)	2204
Eco88I	CYCGRG	1 cut(s)	1931
EcoICRI	GAGCTC	1 cut(s)	1941
EcoO109I	RGGNCCY	1 cut(s)	1260
EcoRI	GAATTC	2 cut(s)	340, 1281
EcoRII	CCWGG	4 cut(s)	248, 335, 418, 1621
EcoT14I	CCWWGG	3 cut(s)	274, 1216, 2053
EcoT22I	ATGCAT	2 cut(s)	685, 1381
EcoT38I	GRGCYC	1 cut(s)	1943
ErhI	CCWWGG	3 cut(s)	274, 1216, 2053
FaqI	GGGAC	1 cut(s)	1929
FauI	CCCGC	2 cut(s)	779, 1284
FauNDI	CATATG	3 cut(s)	358, 558, 1593
FbaI	TGATCA	2 cut(s)	1128, 1296
FblI	GTMKAC	2 cut(s)	390, 748
Fnu4HI	GCNGC	4 cut(s)	298, 543, 675, 1545
FriOI	GRGCYC	1 cut(s)	1943
Fsp4HI	GCNGC	4 cut(s)	298, 543, 675, 1545
FspBI	CTAG	5 cut(s)	254, 318, 824, 1370, 1905
GlaI	GCGC	2 cut(s)	861, 970
GluI	GCNGC	4 cut(s)	298, 543, 675, 1545
GsaI	CCCAGC	2 cut(s)	518, 1671
GsuI	CTGGAG	1 cut(s)	232
HaeII	RGCGCY	1 cut(s)	972
HaeIII	GGCC	1 cut(s)	1262
HapII	CCGG	4 cut(s)	619, 1866, 1912, 1932
HhaI	GCGC	2 cut(s)	862, 971
Hin6I	GCGC	2 cut(s)	860, 969
HinP1I	GCGC	2 cut(s)	860, 969
HincII	GTYRAC	2 cut(s)	414, 1954
HindII	GTYRAC	2 cut(s)	414, 1954
HpaI	GTTAAC	1 cut(s)	1954
HpaII	CCGG	4 cut(s)	619, 1866, 1912, 1932
HphI	GGTGA	6 cut(s)	173, 290, 1306, 1589, 2113, 2228
Hpy166II	GTNNAC	8 cut(s)	371, 391, 414, 749, 764, 1039, 1177, 1954
Hpy188I	TCNGA	8 cut(s)	115, 380, 403, 663, 772, 1795, 1819, 2190
Hpy188III	TCNNGA	8 cut(s)	219, 230, 457, 694, 891, 1300, 2066, 2197
Hpy8I	GTNNAC	8 cut(s)	371, 391, 414, 749, 764, 1039, 1177, 1954
HpyAV	CCTTC	4 cut(s)	280, 1082, 1790, 1871
HpyCH4III	ACNGT	8 cut(s)	395, 500, 570, 739, 1081, 1181, 1307, 2288
HpyCH4IV	ACGT	4 cut(s)	373, 1075, 1314, 1395
HpyF10VI	GCNNNNNNNGC	5 cut(s)	511, 680, 907, 1163, 1714
HpyF3I	CTNAG	6 cut(s)	129, 942, 1919, 2024, 2037, 2204
HpySE526I	ACGT	4 cut(s)	373, 1075, 1314, 1395
HspAI	GCGC	2 cut(s)	860, 969
KpnI	GGTACC	1 cut(s)	1335
Ksp22I	TGATCA	2 cut(s)	1128, 1296
KspAI	GTTAAC	1 cut(s)	1954
LguI	GCTCTTC	1 cut(s)	2042
LmnI	GCTCC	1 cut(s)	1938
Lsp1109I	GCAGC	3 cut(s)	529, 686, 1556
MaeI	CTAG	5 cut(s)	254, 318, 824, 1370, 1905
MaeII	ACGT	4 cut(s)	373, 1075, 1314, 1395
MaeIII	GTNAC	5 cut(s)	733, 1136, 1417, 1522, 2230
MflI	RGATCY	3 cut(s)	727, 1895, 2190
MhlI	GDGCHC	5 cut(s)	18, 766, 1404, 1741, 1943
MluCI	AATT	9 cut(s)	74, 94, 340, 596, 1206, 1281, 1580, 1775, 1785
MlyI	GAGTC	2 cut(s)	72, 1921
MmeI	TCCRAC	1 cut(s)	614
Mph1103I	ATGCAT	2 cut(s)	685, 1381
MroXI	GAANNNNTTC	4 cut(s)	1092, 1206, 1411, 1481
MseI	TTAA	8 cut(s)	782, 840, 897, 947, 1509, 1628, 1698, 1953
MslI	CAYNNNNRTG	3 cut(s)	804, 1458, 1767
MspCI	CTTAAG	1 cut(s)	781
MspI	CCGG	4 cut(s)	619, 1866, 1912, 1932
MspR9I	CCNGG	9 cut(s)	250, 337, 420, 620, 1623, 1867, 1913, 1932, 1933
Mva1269I	GAATGC	5 cut(s)	643, 676, 1233, 1432, 1774
MvaI	CCWGG	4 cut(s)	250, 337, 420, 1623
MwoI	GCNNNNNNNGC	5 cut(s)	511, 680, 907, 1163, 1714
NciI	CCSGG	5 cut(s)	620, 1867, 1913, 1932, 1933
NdeI	CATATG	3 cut(s)	358, 558, 1593
NlaIV	GGNNCC	5 cut(s)	15, 729, 1261, 1333, 1985
NmuCI	GTSAC	2 cut(s)	1417, 2230
NsiI	ATGCAT	2 cut(s)	685, 1381
NspI	RCATGY	3 cut(s)	38, 1045, 1351
PaeI	GCATGC	1 cut(s)	38
PaqCI	CACCTGC	1 cut(s)	29
PciI	ACATGT	2 cut(s)	1041, 1347
PciSI	GCTCTTC	1 cut(s)	2042
PcsI	WCGNNNNNNNCGW	2 cut(s)	370, 2100
PctI	GAATGC	5 cut(s)	643, 676, 1233, 1432, 1774
PdmI	GAANNNNTTC	4 cut(s)	1092, 1206, 1411, 1481
PfoI	TCCNGGA	1 cut(s)	618
PkrI	GCNGC	4 cut(s)	299, 544, 676, 1546
PleI	GAGTC	2 cut(s)	71, 1921
PpsI	GAGTC	2 cut(s)	71, 1921
Ppu21I	YACGTR	3 cut(s)	1076, 1315, 1396
PscI	ACATGT	2 cut(s)	1041, 1347
PsiI	TTATAA	1 cut(s)	509
Psp124BI	GAGCTC	1 cut(s)	1943
Psp6I	CCWGG	4 cut(s)	248, 335, 418, 1621
PspFI	CCCAGC	2 cut(s)	514, 1667
PspGI	CCWGG	4 cut(s)	248, 335, 418, 1621
PspN4I	GGNNCC	5 cut(s)	15, 729, 1261, 1333, 1985
PspPI	GGNCC	1 cut(s)	1260
PsrI	GAACNNNNNNTAC	2 cut(s)	1295, 1327
PstNI	CAGNNNCTG	1 cut(s)	2023
PsuI	RGATCY	3 cut(s)	727, 1895, 2190
RsaI	GTAC	6 cut(s)	1078, 1178, 1333, 1586, 1610, 1713
RsaNI	GTAC	6 cut(s)	1077, 1177, 1332, 1585, 1609, 1712
RseI	CAYNNNNRTG	3 cut(s)	804, 1458, 1767
SacI	GAGCTC	1 cut(s)	1943
SapI	GCTCTTC	1 cut(s)	2042
SaqAI	TTAA	8 cut(s)	782, 840, 897, 947, 1509, 1628, 1698, 1953
SatI	GCNGC	4 cut(s)	298, 543, 675, 1545
Sau96I	GGNCC	1 cut(s)	1260
SchI	GAGTC	2 cut(s)	72, 1921
ScrFI	CCNGG	9 cut(s)	250, 337, 420, 620, 1623, 1867, 1913, 1932, 1933
SduI	GDGCHC	5 cut(s)	18, 766, 1404, 1741, 1943
SfcI	CTRYAG	2 cut(s)	387, 1062
SmaI	CCCGGG	1 cut(s)	1933
SmiMI	CAYNNNNRTG	3 cut(s)	804, 1458, 1767
SmlI	CTYRAG	2 cut(s)	228, 781
SmoI	CTYRAG	2 cut(s)	228, 781
SnaBI	TACGTA	1 cut(s)	1396
SphI	GCATGC	1 cut(s)	38
Sse9I	AATT	9 cut(s)	74, 94, 340, 596, 1206, 1281, 1580, 1775, 1785
SsiI	CCGC	4 cut(s)	298, 786, 1291, 2255
SspMI	CTAG	5 cut(s)	254, 318, 824, 1370, 1905
SstI	GAGCTC	1 cut(s)	1943
StyD4I	CCNGG	9 cut(s)	248, 335, 418, 618, 1621, 1865, 1911, 1930, 1931
StyI	CCWWGG	3 cut(s)	274, 1216, 2053
TaaI	ACNGT	8 cut(s)	395, 500, 570, 739, 1081, 1181, 1307, 2288
TaiI	ACGT	4 cut(s)	376, 1078, 1317, 1398
TaqI	TCGA	2 cut(s)	1756, 2094
TaqII	GACCGA	1 cut(s)	140
TasI	AATT	9 cut(s)	74, 94, 340, 596, 1206, 1281, 1580, 1775, 1785
TatI	WGTACW	3 cut(s)	1176, 1584, 1711
TauI	GCSGC	1 cut(s)	300
Tru1I	TTAA	8 cut(s)	782, 840, 897, 947, 1509, 1628, 1698, 1953
Tru9I	TTAA	8 cut(s)	782, 840, 897, 947, 1509, 1628, 1698, 1953
TscAI	CASTG	3 cut(s)	63, 373, 503
TseFI	GTSAC	2 cut(s)	1417, 2230
TseI	GCWGC	3 cut(s)	542, 674, 1544
Tsp45I	GTSAC	2 cut(s)	1417, 2230
TspGWI	ACGGA	1 cut(s)	1626
TspMI	CCCGGG	1 cut(s)	1931
TspRI	CASTG	3 cut(s)	63, 373, 503
Vha464I	CTTAAG	1 cut(s)	781
VneI	GTGCAC	1 cut(s)	762
XapI	RAATTY	2 cut(s)	340, 1281
XceI	RCATGY	3 cut(s)	38, 1045, 1351
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2303
XmaI	CCCGGG	1 cut(s)	1931
XmiI	GTMKAC	2 cut(s)	390, 748
XmnI	GAANNNNTTC	4 cut(s)	1092, 1206, 1411, 1481
XspI	CTAG	5 cut(s)	254, 318, 824, 1370, 1905
Zsp2I	ATGCAT	2 cut(s)	685, 1381

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.