Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0005453

Physical Location & Seq

Genomic Coordinates Forward (+)

39234822 .. 39235395

Gene Structure 574 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0320700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGAAGTATAAGCCTCAAGCTTATTCATTTGCCGCGGATTTTATGAACTTAATTAGAGAGGAGGTCAGGAATCAGGAGAGCACTAGCGAGGTGGTGAATGCTAACTACTCAGCTGCATTGTTGGGATTAGCATATGGAGACACTGATCTTGTGGCCACAGGGTCAATGCTTGCAGCATTGGAAATCCAGGCAGCTCAAATGTGGTGCCATGTAAGAGAGGGAGATAACATTTATGCACCAGATTACACAAAGGAAAGTCGGGTAGTTGGAGTACTGCTGTGGGCTAATAAGAGAAACAGTAATCTTTGGTTTGCGCCTGCACAGCGGAGAGAGTGCCTGCTTGGAATCCAGCTGCTGCCTATTGTACCTATTACTGAGGAATTGTTCTCTGATGTTGGCTATGTTAGGGAACTTGTGAAGTGGACTGAACCGGCTCTTATTAGAGAGGGTGTTGGGGAAGGATGGAAAGGGTTTGTGTACTCTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

162

Amino Acids

18.24

Weight (kDa)

4.95

Isoelectric Point (pI)

43.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro81C	PF17652	20 - 161	2.1e-31	Glycosyl hydrolase family 81 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005453)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33990 AT4G33990
fragaria_vesca	FvH4_2g05910
malus_domestica	MD05G1081900.v1.1
prunus_persica	Prupe.8G126500_v2.0.a1 Prupe.8G126500_v2.0.a1 Prupe.8G126500_v2.0.a1 Prupe.8G126500_v2.0.a1 Prupe.8G126500_v2.0.a1 Prupe.8G126500_v2.0.a1 Prupe.8G126500_v2.0.a1
pyrus_communis	pycom05g07680
rosa_chinensis	RchiOBHm_Chr2g0134891 RchiOBHm_Chr6g0257591
rosa_laevigata	RLG00000014704 RLG00000014708
rosa_multiflora	Rmu_sc0004702.1_g000004
rosa_roxburghii	Rroxscaffold_7G00208820
rosa_rugosa	Rorug02G0320700 Rorug05G0570400
rosa_samantha	Rh2AG373000 Rh2CG356900 Rh6AG087200 Rh6BG080500 Rh6CG075800 Rh6DG072600
rosa_wichuraiana	Rw2G030350 Rw6G007750 Rw6G007790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	204
AccII	CGCG	1 cut(s)	35
AciI	CCGC	3 cut(s)	33, 35, 325
AcoI	YGGCCR	1 cut(s)	153
AfaI	GTAC	3 cut(s)	273, 366, 479
AjnI	CCWGG	1 cut(s)	186
AluBI	AGCT	4 cut(s)	20, 113, 194, 352
AluI	AGCT	4 cut(s)	20, 113, 194, 352
Alw21I	GWGCWC	1 cut(s)	83
Alw26I	GTCTC	1 cut(s)	132
AlwNI	CAGNNNCTG	1 cut(s)	355
AoxI	GGCC	1 cut(s)	153
ApeKI	GCWGC	5 cut(s)	113, 173, 191, 352, 355
AspLEI	GCGC	1 cut(s)	316
AsuHPI	GGTGA	1 cut(s)	106
BalI	TGGCCA	1 cut(s)	155
BanI	GGYRCC	1 cut(s)	204
Bbv12I	GWGCWC	1 cut(s)	83
BbvI	GCAGC	5 cut(s)	100, 185, 203, 339, 342
BccI	CCATC	1 cut(s)	456
BciT130I	CCWGG	1 cut(s)	188
BcoDI	GTCTC	1 cut(s)	132
BfaI	CTAG	1 cut(s)	84
BisI	GCNGC	6 cut(s)	33, 114, 174, 192, 353, 356
BlsI	GCNGC	6 cut(s)	34, 115, 175, 193, 354, 357
BmcAI	AGTACT	1 cut(s)	273
Bme1390I	CCNGG	1 cut(s)	188
BmiI	GGNNCC	1 cut(s)	206
BmrFI	CCNGG	1 cut(s)	188
BsaJI	CCNNGG	1 cut(s)	33
Bse118I	RCCGGY	1 cut(s)	430
BseBI	CCWGG	1 cut(s)	188
BseDI	CCNNGG	1 cut(s)	33
BseGI	GGATG	1 cut(s)	467
BseMII	CTCAG	2 cut(s)	123, 366
BseRI	GAGGAG	1 cut(s)	74
BseXI	GCAGC	5 cut(s)	100, 185, 203, 339, 342
BsgI	GTGCAG	1 cut(s)	303
Bsh1236I	CGCG	1 cut(s)	35
BshFI	GGCC	1 cut(s)	155
BshNI	GGYRCC	1 cut(s)	204
BsiHKAI	GWGCWC	1 cut(s)	83
BsiSI	CCGG	1 cut(s)	431
BsmAI	GTCTC	1 cut(s)	132
BsmI	GAATGC	1 cut(s)	103
BsnI	GGCC	1 cut(s)	155
Bsp1286I	GDGCHC	1 cut(s)	83
Bsp143I	GATC	1 cut(s)	145
BspACI	CCGC	3 cut(s)	33, 35, 325
BspANI	GGCC	1 cut(s)	155
BspCNI	CTCAG	2 cut(s)	122, 367
BspFNI	CGCG	1 cut(s)	35
BspLI	GGNNCC	1 cut(s)	206
BspT107I	GGYRCC	1 cut(s)	204
BsrFI	RCCGGY	1 cut(s)	430
BssAI	RCCGGY	1 cut(s)	430
BssECI	CCNNGG	1 cut(s)	33
BssMI	GATC	1 cut(s)	145
Bst2UI	CCWGG	1 cut(s)	188
Bst4CI	ACNGT	1 cut(s)	299
BstC8I	GCNNGC	3 cut(s)	171, 318, 338
BstDEI	CTNAG	2 cut(s)	109, 375
BstDSI	CCRYGG	1 cut(s)	33
BstF5I	GGATG	1 cut(s)	467
BstFNI	CGCG	1 cut(s)	35
BstHHI	GCGC	1 cut(s)	316
BstKTI	GATC	1 cut(s)	148
BstMAI	GTCTC	1 cut(s)	132
BstMBI	GATC	1 cut(s)	145
BstMWI	GCNNNNNNNGC	1 cut(s)	322
BstNI	CCWGG	1 cut(s)	188
BstSCI	CCNGG	1 cut(s)	186
BstUI	CGCG	1 cut(s)	35
BstV1I	GCAGC	5 cut(s)	100, 185, 203, 339, 342
BsuRI	GGCC	1 cut(s)	155
BtgI	CCRYGG	1 cut(s)	33
BtsCI	GGATG	1 cut(s)	467
BtsIMutI	CAGTG	1 cut(s)	141
Cac8I	GCNNGC	3 cut(s)	171, 318, 338
CaiI	CAGNNNCTG	1 cut(s)	355
CfoI	GCGC	1 cut(s)	316
Cfr10I	RCCGGY	1 cut(s)	430
Cfr42I	CCGCGG	1 cut(s)	36
Csp6I	GTAC	3 cut(s)	272, 365, 478
CviAII	CATG	1 cut(s)	209
CviJI	RGCY	9 cut(s)	13, 20, 113, 155, 194, 284, 352, 399, 434
CviKI_1	RGCY	9 cut(s)	13, 20, 113, 155, 194, 284, 352, 399, 434
CviQI	GTAC	3 cut(s)	272, 365, 478
DdeI	CTNAG	2 cut(s)	109, 375
DpnI	GATC	1 cut(s)	147
DpnII	GATC	1 cut(s)	145
EaeI	YGGCCR	1 cut(s)	153
EcoRII	CCWGG	1 cut(s)	186
FaeI	CATG	1 cut(s)	212
FaiI	YATR	7 cut(s)	9, 44, 133, 135, 210, 234, 402
FatI	CATG	1 cut(s)	208
FauNDI	CATATG	1 cut(s)	133
Fnu4HI	GCNGC	6 cut(s)	33, 114, 174, 192, 353, 356
FokI	GGATG	1 cut(s)	474
Fsp4HI	GCNGC	6 cut(s)	33, 114, 174, 192, 353, 356
FspBI	CTAG	1 cut(s)	84
GlaI	GCGC	1 cut(s)	315
GluI	GCNGC	6 cut(s)	33, 114, 174, 192, 353, 356
HaeIII	GGCC	1 cut(s)	155
HapII	CCGG	1 cut(s)	431
HhaI	GCGC	1 cut(s)	316
Hin1II	CATG	1 cut(s)	212
Hin6I	GCGC	1 cut(s)	314
HinP1I	GCGC	1 cut(s)	314
HindIII	AAGCTT	1 cut(s)	18
HinfI	GANTC	2 cut(s)	70, 345
HpaII	CCGG	1 cut(s)	431
HphI	GGTGA	1 cut(s)	106
Hpy166II	GTNNAC	2 cut(s)	423, 478
Hpy188I	TCNGA	1 cut(s)	391
Hpy188III	TCNNGA	2 cut(s)	67, 74
Hpy8I	GTNNAC	2 cut(s)	423, 478
HpyAV	CCTTC	1 cut(s)	452
HpyCH4III	ACNGT	1 cut(s)	299
HpyCH4V	TGCA	4 cut(s)	116, 173, 236, 320
HpyF10VI	GCNNNNNNNGC	1 cut(s)	322
HpyF3I	CTNAG	2 cut(s)	109, 375
Hsp92II	CATG	1 cut(s)	212
HspAI	GCGC	1 cut(s)	314
KspI	CCGCGG	1 cut(s)	36
Kzo9I	GATC	1 cut(s)	145
Lsp1109I	GCAGC	5 cut(s)	100, 185, 203, 339, 342
MaeI	CTAG	1 cut(s)	84
MalI	GATC	1 cut(s)	147
MboI	GATC	1 cut(s)	145
MhlI	GDGCHC	1 cut(s)	83
MlsI	TGGCCA	1 cut(s)	155
MluCI	AATT	2 cut(s)	51, 380
MluNI	TGGCCA	1 cut(s)	155
MmeI	TCCRAC	1 cut(s)	247
MnlI	CCTC	7 cut(s)	24, 52, 55, 82, 211, 370, 439
Mox20I	TGGCCA	1 cut(s)	155
MscI	TGGCCA	1 cut(s)	155
MseI	TTAA	1 cut(s)	50
Msp20I	TGGCCA	1 cut(s)	155
MspA1I	CMGCKG	4 cut(s)	35, 113, 325, 352
MspI	CCGG	1 cut(s)	431
MspR9I	CCNGG	1 cut(s)	188
Mva1269I	GAATGC	1 cut(s)	103
MvaI	CCWGG	1 cut(s)	188
MvnI	CGCG	1 cut(s)	35
MwoI	GCNNNNNNNGC	1 cut(s)	322
NdeI	CATATG	1 cut(s)	133
NdeII	GATC	1 cut(s)	145
NlaIII	CATG	1 cut(s)	212
NlaIV	GGNNCC	1 cut(s)	206
PctI	GAATGC	1 cut(s)	103
PfeI	GAWTC	2 cut(s)	70, 345
PkrI	GCNGC	6 cut(s)	34, 115, 175, 193, 354, 357
Psp6I	CCWGG	1 cut(s)	186
PspGI	CCWGG	1 cut(s)	186
PspN4I	GGNNCC	1 cut(s)	206
PstNI	CAGNNNCTG	1 cut(s)	355
PvuII	CAGCTG	2 cut(s)	113, 352
RsaI	GTAC	3 cut(s)	273, 366, 479
RsaNI	GTAC	3 cut(s)	272, 365, 478
SacII	CCGCGG	1 cut(s)	36
SaqAI	TTAA	1 cut(s)	50
SatI	GCNGC	6 cut(s)	33, 114, 174, 192, 353, 356
Sau3AI	GATC	1 cut(s)	145
ScaI	AGTACT	1 cut(s)	273
ScrFI	CCNGG	1 cut(s)	188
SduI	GDGCHC	1 cut(s)	83
SetI	ASST	7 cut(s)	22, 66, 93, 115, 196, 354, 370
Sfr303I	CCGCGG	1 cut(s)	36
SgrBI	CCGCGG	1 cut(s)	36
SmlI	CTYRAG	1 cut(s)	15
SmoI	CTYRAG	1 cut(s)	15
Sse9I	AATT	2 cut(s)	51, 380
SsiI	CCGC	3 cut(s)	33, 35, 325
SspMI	CTAG	1 cut(s)	84
StyD4I	CCNGG	1 cut(s)	186
TaaI	ACNGT	1 cut(s)	299
TasI	AATT	2 cut(s)	51, 380
TatI	WGTACW	2 cut(s)	271, 477
TauI	GCSGC	1 cut(s)	35
TfiI	GAWTC	2 cut(s)	70, 345
Tru1I	TTAA	1 cut(s)	50
Tru9I	TTAA	1 cut(s)	50
TscAI	CASTG	1 cut(s)	148
TseI	GCWGC	5 cut(s)	113, 173, 191, 352, 355
TspDTI	ATGAA	3 cut(s)	15, 17, 59
TspRI	CASTG	1 cut(s)	148
XspI	CTAG	1 cut(s)	84
ZrmI	AGTACT	1 cut(s)	273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.