Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0005453

Physical Location & Seq

Genomic Coordinates Forward (+)

48332391 .. 48334659

Gene Structure 2269 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG356900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1680 bp

ATGTTCAGTTTGGTGCCCACCTGCAAAGGTAGGCATGCTTGCAAAAGTTTCCCCTCACTGCGAGTCTGTTACCAATTCTTCTCTTCAGCTACTAATTCATTGCCTTCTGTATCGGATGGCTTTGGAACTGAGAACAAAAGAACTGATTTCGGTCTTCTATTTCAATCCTGCACAAAACTTCACCATGCGAATTTTCTCCATGCTTTTCTTGTGGTGTCAGGAAAAGCTCAAGATATTATTTTTTCCTCCAGGCTAGTCAATCGGTATGCCTACCTTGGTGATGTTTCATTCTCACGCCGCACTTTTGATTCGATGCCTAGAAAGGATGTCTATACCTGGAATTCAATGGTGTCTGCATATGTTCGCAGTGGACGTTTCCGAGAAGCTGTAGACTGTTTCTCTGATTTTTTGTTGACCCCTGGTCTGCGACCTGATTTCTACACTTTTCCTCCTGTCTTCAAAGCGTGTGGGAATCTAAATGTTGGGAAGAAAATACACTGTTGGCTTGTAAAGCTGGGTTTGGAATGGGATGTCTTTGTTGCTGCTTCCTTGATCCATATGTATTCAAGGTTTGGATTTATGAGTGTTGCTCATAAATTGTTTGACGAGATGCCATTCCGGGATATGGGTTGTTGGAATGCAATGATTTCTGGGTTTTGTCAGAATGGGAATGCAGCAGATGCATTAGATGTCTTGATTGAAATGAGATCAGAGGGTGTAAAGATGGATCCTGTAACTGTTGCAAGTCTACTGACTGCTTGTGCACAGTCAGATGATTCCTTAAGTGGGATGCTGATTCATTTGTATGTCATAAAGCATGGACTAGAGTTTGATCTGTTTGTATGCAATGCCTTGATTAACATGTATGCTAAATTTGGTTGCTTGGGACACGCACACAGGGTTTTTTATGAAATGCAGGTAAGAGATTTGGTGTCATGGAACTCAATAATTACTGCAAATGAGCAGAATGATGAGCCGATGACTGCGCTTGAATTCTTCAACAGAATGCAACTATCCGGAGTTAAGCCTGATTGGTTAACACTAGTGAGTTTGGGTTCCATTATAGCTCAATTAAATGATGCTGAAATGAGTAGGTCTGTTCATGGATTCATTTTGAGGAGAGATTGGTTCAAGGAAGATGTTGTTATTGGAAATGCAGTTGTGGACATGTATGCAAAGTTGGGTGCTGTAGATTCTGCACGTACTGTTTTTGAAGGACTTCCTGTCAAGGATGTGGTTTCATGGAATACTTTGATCACAGGTTACACTCAAAATGGTCTTGCAAGTGAGGCGAATGAAGTGTACTGTATGATGCAAGAGTGCAAAGAAATAATTCCAAACCAAGGAACTTGGGTTAGCATTCTACCAGCATTTACCCATTTAGGGGCCTTGCAACAAGGGATGAAAATTCATGGGCGGGTGATCAAGAACTGTCTCTACTTGGATGTATTTGTGGGTACCTGCTTAATTGACATGTATGGAAAATGTGGGAGACTAGATGATGCATTATCATTATTCTACCAAGTGCCCAGAATGAGTTCAGTCACTTGGAATGCCATGGTTTCCTGTCTTGGAGTTCATGGGCATGGTGGGAAAGCTGTGAAGCTATTCAAAGAAATGATAGATGAAGGGGGTCAAGCCAGATCATGTAACCTTTGTATCTCTAATGGCAGCTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

559

Amino Acids

62.47

Weight (kDa)

6.94

Isoelectric Point (pI)

41.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	108 - 156	1e-06	PPR repeat family
PPR	PF01535	111 - 135	5.5e-06	PPR repeat
PPR_2	PF13041	208 - 255	6.8e-11	PPR repeat family
PPR_1	PF12854	208 - 236	2.4e-06	PPR repeat
PPR	PF01535	211 - 240	3.7e-08	PPR repeat
TPR_24	PF23276	212 - 303	4.4e-07	Fungal tetratrico peptide repeats
PPR_2	PF13041	309 - 348	3.9e-06	PPR repeat family
PPR_2	PF13041	410 - 458	1.6e-07	PPR repeat family
PPR	PF01535	413 - 441	7.6e-07	PPR repeat
PPR	PF01535	515 - 544	2.4e-07	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005453)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33990 AT4G33990
fragaria_vesca	FvH4_2g05910
malus_domestica	MD05G1081900.v1.1
prunus_persica	Prupe.8G126500_v2.0.a1 Prupe.8G126500_v2.0.a1 Prupe.8G126500_v2.0.a1 Prupe.8G126500_v2.0.a1 Prupe.8G126500_v2.0.a1 Prupe.8G126500_v2.0.a1 Prupe.8G126500_v2.0.a1
pyrus_communis	pycom05g07680
rosa_chinensis	RchiOBHm_Chr2g0134891 RchiOBHm_Chr6g0257591
rosa_laevigata	RLG00000014704 RLG00000014708
rosa_multiflora	Rmu_sc0004702.1_g000004
rosa_roxburghii	Rroxscaffold_7G00208820
rosa_rugosa	Rorug02G0320700 Rorug05G0570400
rosa_samantha	Rh2AG373000 Rh2CG356900 Rh6AG087200 Rh6BG080500 Rh6CG075800 Rh6DG072600
rosa_wichuraiana	Rw2G030350 Rw6G007750 Rw6G007790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	29
Acc36I	ACCTGC	3 cut(s)	29, 907, 1469
Acc65I	GGTACC	1 cut(s)	1457
AccB1I	GGYRCC	2 cut(s)	13, 1457
AccI	GTMKAC	2 cut(s)	390, 748
AccIII	TCCGGA	1 cut(s)	1016
AciI	CCGC	2 cut(s)	298, 1417
AclWI	GGATC	3 cut(s)	547, 722, 735
AcsI	RAATTY	5 cut(s)	190, 340, 872, 992, 1407
AcuI	CTGAAG	1 cut(s)	69
AfaI	GTAC	3 cut(s)	1204, 1304, 1459
AfiI	CCNNNNNNNGG	5 cut(s)	625, 786, 1343, 1383, 1384
AflII	CTTAAG	1 cut(s)	781
AflIII	ACRYGT	3 cut(s)	861, 1167, 1473
AhdI	GACNNNNNGTC	2 cut(s)	420, 1223
AhlI	ACTAGT	1 cut(s)	1042
AjnI	CCWGG	3 cut(s)	248, 335, 418
AluBI	AGCT	8 cut(s)	89, 227, 386, 514, 1067, 1598, 1606, 1674
AluI	AGCT	8 cut(s)	89, 227, 386, 514, 1067, 1598, 1606, 1674
Alw21I	GWGCWC	1 cut(s)	766
Alw26I	GTCTC	2 cut(s)	1439, 1486
Alw44I	GTGCAC	1 cut(s)	762
AlwI	GGATC	3 cut(s)	547, 722, 735
Aor13HI	TCCGGA	1 cut(s)	1016
AoxI	GGCC	1 cut(s)	1386
ApaLI	GTGCAC	1 cut(s)	762
ApeKI	GCWGC	3 cut(s)	542, 674, 1671
ApoI	RAATTY	5 cut(s)	190, 340, 872, 992, 1407
Asp700I	GAANNNNTTC	4 cut(s)	1218, 1332, 1537, 1607
Asp718I	GGTACC	1 cut(s)	1457
AspLEI	GCGC	1 cut(s)	988
AspS9I	GGNCC	1 cut(s)	1386
AsuC2I	CCSGG	1 cut(s)	620
AsuHPI	GGTGA	3 cut(s)	173, 290, 1432
BaeGI	GKGCMC	3 cut(s)	18, 766, 1530
BaeI	ACNNNNGTAYC	2 cut(s)	1642, 1675
BamHI	GGATCC	1 cut(s)	727
BanI	GGYRCC	2 cut(s)	13, 1457
BbsI	GAAGAC	2 cut(s)	146, 448
Bbv12I	GWGCWC	1 cut(s)	766
BbvI	GCAGC	2 cut(s)	529, 686
BccI	CCATC	2 cut(s)	110, 718
BciT130I	CCWGG	3 cut(s)	250, 337, 420
BclI	TGATCA	2 cut(s)	1254, 1422
BcnI	CCSGG	1 cut(s)	620
BcoDI	GTCTC	2 cut(s)	1439, 1486
BcuI	ACTAGT	1 cut(s)	1042
BfaI	CTAG	5 cut(s)	254, 318, 824, 1043, 1496
BfmI	CTRYAG	2 cut(s)	387, 1188
BfrI	CTTAAG	1 cut(s)	781
BfuAI	ACCTGC	3 cut(s)	29, 907, 1469
BisI	GCNGC	4 cut(s)	298, 543, 675, 1672
BlsI	GCNGC	4 cut(s)	299, 544, 676, 1673
Bme1390I	CCNGG	4 cut(s)	250, 337, 420, 620
BmeRI	GACNNNNNGTC	2 cut(s)	420, 1223
BmgT120I	GGNCC	1 cut(s)	1386
BmiI	GGNNCC	5 cut(s)	15, 729, 1057, 1387, 1459
BmrFI	CCNGG	4 cut(s)	250, 337, 420, 620
BmsI	GCATC	7 cut(s)	303, 600, 670, 780, 1069, 1302, 1492
BpiI	GAAGAC	2 cut(s)	146, 448
BplI	GAGNNNNNCTC	2 cut(s)	574, 606
BpmI	CTGGAG	1 cut(s)	232
BpuEI	CTTGAG	1 cut(s)	213
BpuMI	CCSGG	1 cut(s)	620
BsaAI	YACGTR	1 cut(s)	1202
BsaJI	CCNNGG	4 cut(s)	274, 418, 1342, 1557
BsaWI	WCCGGW	1 cut(s)	1016
BsaXI	ACNNNNNCTCC	2 cut(s)	433, 463
Bsc4I	CCNNNNNNNGG	5 cut(s)	625, 786, 1343, 1383, 1384
Bse3DI	GCAATG	3 cut(s)	98, 648, 853
BseAI	TCCGGA	1 cut(s)	1016
BseBI	CCWGG	3 cut(s)	250, 337, 420
BseDI	CCNNGG	4 cut(s)	274, 418, 1342, 1557
BseGI	GGATG	7 cut(s)	121, 331, 535, 795, 1237, 1407, 1450
BseLI	CCNNNNNNNGG	5 cut(s)	625, 786, 1343, 1383, 1384
BseMI	GCAATG	3 cut(s)	98, 648, 853
BseMII	CTCAG	1 cut(s)	120
BseRI	GAGGAG	1 cut(s)	1132
BseSI	GKGCMC	3 cut(s)	18, 766, 1530
BseXI	GCAGC	2 cut(s)	529, 686
BseYI	CCCAGC	1 cut(s)	514
BsgI	GTGCAG	2 cut(s)	154, 1182
BshFI	GGCC	1 cut(s)	1388
BshNI	GGYRCC	2 cut(s)	13, 1457
BsiHKAI	GWGCWC	1 cut(s)	766
BsiSI	CCGG	2 cut(s)	619, 1017
BslFI	GGGAC	1 cut(s)	900
BslI	CCNNNNNNNGG	5 cut(s)	625, 786, 1343, 1383, 1384
BsmAI	GTCTC	2 cut(s)	1439, 1486
BsmFI	GGGAC	1 cut(s)	900
BsmI	GAATGC	5 cut(s)	643, 676, 1011, 1359, 1558
BsnI	GGCC	1 cut(s)	1388
Bsp1286I	GDGCHC	3 cut(s)	18, 766, 1530
Bsp13I	TCCGGA	1 cut(s)	1016
Bsp143I	GATC	7 cut(s)	552, 707, 727, 832, 1254, 1422, 1643
Bsp19I	CCATGG	1 cut(s)	1557
BspACI	CCGC	2 cut(s)	298, 1417
BspANI	GGCC	1 cut(s)	1388
BspCNI	CTCAG	1 cut(s)	121
BspEI	TCCGGA	1 cut(s)	1016
BspLI	GGNNCC	5 cut(s)	15, 729, 1057, 1387, 1459
BspMI	ACCTGC	3 cut(s)	29, 907, 1469
BspPI	GGATC	3 cut(s)	547, 722, 735
BspT107I	GGYRCC	2 cut(s)	13, 1457
BspTI	CTTAAG	1 cut(s)	781
BsrDI	GCAATG	3 cut(s)	98, 648, 853
BssECI	CCNNGG	4 cut(s)	274, 418, 1342, 1557
BssMI	GATC	7 cut(s)	552, 707, 727, 832, 1254, 1422, 1643
BssT1I	CCWWGG	3 cut(s)	274, 1342, 1557
Bst2UI	CCWGG	3 cut(s)	250, 337, 420
Bst4CI	ACNGT	7 cut(s)	395, 500, 739, 768, 1207, 1307, 1433
Bst6I	CTCTTC	1 cut(s)	88
BstAFI	CTTAAG	1 cut(s)	781
BstAPI	GCANNNNNTGC	1 cut(s)	680
BstBAI	YACGTR	1 cut(s)	1202
BstC8I	GCNNGC	2 cut(s)	36, 40
BstDEI	CTNAG	1 cut(s)	129
BstDSI	CCRYGG	1 cut(s)	1557
BstF5I	GGATG	7 cut(s)	121, 331, 535, 795, 1237, 1407, 1450
BstHHI	GCGC	1 cut(s)	988
BstKTI	GATC	7 cut(s)	555, 710, 730, 835, 1257, 1425, 1646
BstMAI	GTCTC	2 cut(s)	1439, 1486
BstMBI	GATC	7 cut(s)	552, 707, 727, 832, 1254, 1422, 1643
BstMWI	GCNNNNNNNGC	3 cut(s)	511, 680, 1289
BstNI	CCWGG	3 cut(s)	250, 337, 420
BstNSI	RCATGY	4 cut(s)	38, 865, 1171, 1477
BstSCI	CCNGG	4 cut(s)	248, 335, 418, 618
BstSFI	CTRYAG	2 cut(s)	387, 1188
BstSLI	GKGCMC	3 cut(s)	18, 766, 1530
BstV1I	GCAGC	2 cut(s)	529, 686
BstV2I	GAAGAC	2 cut(s)	146, 448
BstX2I	RGATCY	1 cut(s)	727
BstYI	RGATCY	1 cut(s)	727
BsuRI	GGCC	1 cut(s)	1388
BtgI	CCRYGG	1 cut(s)	1557
BtsCI	GGATG	7 cut(s)	121, 331, 535, 795, 1237, 1407, 1450
BtsI	GCAGTG	2 cut(s)	56, 373
BtsIMutI	CAGTG	3 cut(s)	56, 373, 496
BveI	ACCTGC	3 cut(s)	29, 907, 1469
Cac8I	GCNNGC	2 cut(s)	36, 40
CfoI	GCGC	1 cut(s)	988
Cfr13I	GGNCC	1 cut(s)	1386
Csp6I	GTAC	3 cut(s)	1203, 1303, 1458
CspCI	CAANNNNNGTGG	2 cut(s)	448, 483
CviQI	GTAC	3 cut(s)	1203, 1303, 1458
DdeI	CTNAG	1 cut(s)	129
DpnI	GATC	7 cut(s)	554, 709, 729, 834, 1256, 1424, 1645
DpnII	GATC	7 cut(s)	552, 707, 727, 832, 1254, 1422, 1643
DriI	GACNNNNNGTC	2 cut(s)	420, 1223
Eam1104I	CTCTTC	1 cut(s)	88
Eam1105I	GACNNNNNGTC	2 cut(s)	420, 1223
EarI	CTCTTC	1 cut(s)	88
Eco130I	CCWWGG	3 cut(s)	274, 1342, 1557
Eco57I	CTGAAG	1 cut(s)	69
EcoO109I	RGGNCCY	1 cut(s)	1386
EcoRI	GAATTC	2 cut(s)	340, 992
EcoRII	CCWGG	3 cut(s)	248, 335, 418
EcoT14I	CCWWGG	3 cut(s)	274, 1342, 1557
EcoT22I	ATGCAT	2 cut(s)	685, 1507
ErhI	CCWWGG	3 cut(s)	274, 1342, 1557
FaqI	GGGAC	1 cut(s)	900
FauI	CCCGC	1 cut(s)	1410
FauNDI	CATATG	2 cut(s)	358, 558
FbaI	TGATCA	2 cut(s)	1254, 1422
FblI	GTMKAC	2 cut(s)	390, 748
Fnu4HI	GCNGC	4 cut(s)	298, 543, 675, 1672
FokI	GGATG	7 cut(s)	128, 338, 542, 802, 1244, 1414, 1457
Fsp4HI	GCNGC	4 cut(s)	298, 543, 675, 1672
FspBI	CTAG	5 cut(s)	254, 318, 824, 1043, 1496
GlaI	GCGC	1 cut(s)	987
GluI	GCNGC	4 cut(s)	298, 543, 675, 1672
GsaI	CCCAGC	1 cut(s)	518
GsuI	CTGGAG	1 cut(s)	232
HaeIII	GGCC	1 cut(s)	1388
HapII	CCGG	2 cut(s)	619, 1017
HhaI	GCGC	1 cut(s)	988
Hin6I	GCGC	1 cut(s)	986
HinP1I	GCGC	1 cut(s)	986
HincII	GTYRAC	2 cut(s)	414, 1038
HindII	GTYRAC	2 cut(s)	414, 1038
HinfI	GANTC	7 cut(s)	63, 308, 472, 776, 796, 1107, 1193
HpaI	GTTAAC	1 cut(s)	1038
HpaII	CCGG	2 cut(s)	619, 1017
HphI	GGTGA	3 cut(s)	173, 290, 1432
Hpy166II	GTNNAC	8 cut(s)	371, 391, 414, 749, 764, 1038, 1165, 1303
Hpy188I	TCNGA	6 cut(s)	115, 380, 403, 663, 712, 772
Hpy188III	TCNNGA	5 cut(s)	219, 230, 694, 1017, 1426
Hpy8I	GTNNAC	8 cut(s)	371, 391, 414, 749, 764, 1038, 1165, 1303
HpyAV	CCTTC	3 cut(s)	114, 1208, 1622
HpyCH4III	ACNGT	7 cut(s)	395, 500, 739, 768, 1207, 1307, 1433
HpyCH4IV	ACGT	2 cut(s)	373, 1201
HpyF10VI	GCNNNNNNNGC	3 cut(s)	511, 680, 1289
HpyF3I	CTNAG	1 cut(s)	129
HpySE526I	ACGT	2 cut(s)	373, 1201
HspAI	GCGC	1 cut(s)	986
Kpn2I	TCCGGA	1 cut(s)	1016
KpnI	GGTACC	1 cut(s)	1461
Ksp22I	TGATCA	2 cut(s)	1254, 1422
KspAI	GTTAAC	1 cut(s)	1038
Kzo9I	GATC	7 cut(s)	552, 707, 727, 832, 1254, 1422, 1643
Lsp1109I	GCAGC	2 cut(s)	529, 686
LweI	GCATC	7 cut(s)	303, 600, 670, 780, 1069, 1302, 1492
MaeI	CTAG	5 cut(s)	254, 318, 824, 1043, 1496
MaeII	ACGT	2 cut(s)	373, 1201
MaeIII	GTNAC	5 cut(s)	68, 733, 1262, 1543, 1649
MalI	GATC	7 cut(s)	554, 709, 729, 834, 1256, 1424, 1645
MboI	GATC	7 cut(s)	552, 707, 727, 832, 1254, 1422, 1643
MboII	GAAGA	7 cut(s)	70, 75, 146, 448, 499, 988, 1148
MflI	RGATCY	1 cut(s)	727
MhlI	GDGCHC	3 cut(s)	18, 766, 1530
MlyI	GAGTC	1 cut(s)	72
MmeI	TCCRAC	1 cut(s)	614
MnlI	CCTC	6 cut(s)	64, 256, 459, 706, 1110, 1282
Mph1103I	ATGCAT	2 cut(s)	685, 1507
MroI	TCCGGA	1 cut(s)	1016
MroXI	GAANNNNTTC	4 cut(s)	1218, 1332, 1537, 1607
MseI	TTAA	6 cut(s)	782, 858, 1023, 1037, 1073, 1466
MslI	CAYNNNNRTG	2 cut(s)	804, 1584
MspCI	CTTAAG	1 cut(s)	781
MspI	CCGG	2 cut(s)	619, 1017
MspR9I	CCNGG	4 cut(s)	250, 337, 420, 620
Mva1269I	GAATGC	5 cut(s)	643, 676, 1011, 1359, 1558
MvaI	CCWGG	3 cut(s)	250, 337, 420
MwoI	GCNNNNNNNGC	3 cut(s)	511, 680, 1289
NciI	CCSGG	1 cut(s)	620
NcoI	CCATGG	1 cut(s)	1557
NdeI	CATATG	2 cut(s)	358, 558
NdeII	GATC	7 cut(s)	552, 707, 727, 832, 1254, 1422, 1643
NlaIV	GGNNCC	5 cut(s)	15, 729, 1057, 1387, 1459
NmuCI	GTSAC	1 cut(s)	1543
NsiI	ATGCAT	2 cut(s)	685, 1507
NspI	RCATGY	4 cut(s)	38, 865, 1171, 1477
PaeI	GCATGC	1 cut(s)	38
PaqCI	CACCTGC	1 cut(s)	29
PciI	ACATGT	3 cut(s)	861, 1167, 1473
PcsI	WCGNNNNNNNCGW	1 cut(s)	370
PctI	GAATGC	5 cut(s)	643, 676, 1011, 1359, 1558
PdmI	GAANNNNTTC	4 cut(s)	1218, 1332, 1537, 1607
PfeI	GAWTC	6 cut(s)	308, 472, 776, 796, 1107, 1193
PfoI	TCCNGGA	1 cut(s)	618
PkrI	GCNGC	4 cut(s)	299, 544, 676, 1673
PleI	GAGTC	1 cut(s)	71
PpsI	GAGTC	1 cut(s)	71
Ppu21I	YACGTR	1 cut(s)	1202
PscI	ACATGT	3 cut(s)	861, 1167, 1473
Psp6I	CCWGG	3 cut(s)	248, 335, 418
PspFI	CCCAGC	1 cut(s)	514
PspGI	CCWGG	3 cut(s)	248, 335, 418
PspN4I	GGNNCC	5 cut(s)	15, 729, 1057, 1387, 1459
PspPI	GGNCC	1 cut(s)	1386
PsrI	GAACNNNNNNTAC	2 cut(s)	1421, 1453
PsuI	RGATCY	1 cut(s)	727
RsaI	GTAC	3 cut(s)	1204, 1304, 1459
RsaNI	GTAC	3 cut(s)	1203, 1303, 1458
RseI	CAYNNNNRTG	2 cut(s)	804, 1584
SaqAI	TTAA	6 cut(s)	782, 858, 1023, 1037, 1073, 1466
SatI	GCNGC	4 cut(s)	298, 543, 675, 1672
Sau3AI	GATC	7 cut(s)	552, 707, 727, 832, 1254, 1422, 1643
Sau96I	GGNCC	1 cut(s)	1386
SchI	GAGTC	1 cut(s)	72
ScrFI	CCNGG	4 cut(s)	250, 337, 420, 620
SduI	GDGCHC	3 cut(s)	18, 766, 1530
SfaNI	GCATC	7 cut(s)	303, 600, 670, 780, 1069, 1302, 1492
SfcI	CTRYAG	2 cut(s)	387, 1188
SmiMI	CAYNNNNRTG	2 cut(s)	804, 1584
SmlI	CTYRAG	2 cut(s)	228, 781
SmoI	CTYRAG	2 cut(s)	228, 781
SpeI	ACTAGT	1 cut(s)	1042
SphI	GCATGC	1 cut(s)	38
SsiI	CCGC	2 cut(s)	298, 1417
SspMI	CTAG	5 cut(s)	254, 318, 824, 1043, 1496
StyD4I	CCNGG	4 cut(s)	248, 335, 418, 618
StyI	CCWWGG	3 cut(s)	274, 1342, 1557
TaaI	ACNGT	7 cut(s)	395, 500, 739, 768, 1207, 1307, 1433
TaiI	ACGT	2 cut(s)	376, 1204
TaqI	TCGA	1 cut(s)	311
TaqII	GACCGA	1 cut(s)	140
TatI	WGTACW	1 cut(s)	1302
TauI	GCSGC	1 cut(s)	300
TfiI	GAWTC	6 cut(s)	308, 472, 776, 796, 1107, 1193
Tru1I	TTAA	6 cut(s)	782, 858, 1023, 1037, 1073, 1466
Tru9I	TTAA	6 cut(s)	782, 858, 1023, 1037, 1073, 1466
TscAI	CASTG	3 cut(s)	63, 373, 503
TseFI	GTSAC	1 cut(s)	1543
TseI	GCWGC	3 cut(s)	542, 674, 1671
Tsp45I	GTSAC	1 cut(s)	1543
TspRI	CASTG	3 cut(s)	63, 373, 503
Vha464I	CTTAAG	1 cut(s)	781
VneI	GTGCAC	1 cut(s)	762
XapI	RAATTY	5 cut(s)	190, 340, 872, 992, 1407
XceI	RCATGY	4 cut(s)	38, 865, 1171, 1477
XmiI	GTMKAC	2 cut(s)	390, 748
XmnI	GAANNNNTTC	4 cut(s)	1218, 1332, 1537, 1607
XspI	CTAG	5 cut(s)	254, 318, 824, 1043, 1496
Zsp2I	ATGCAT	2 cut(s)	685, 1507

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.