Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G33990 AT4G33990 |
| fragaria_vesca | FvH4_2g05910 |
| malus_domestica | MD05G1081900.v1.1 |
| prunus_persica | Prupe.8G126500_v2.0.a1 Prupe.8G126500_v2.0.a1 Prupe.8G126500_v2.0.a1 Prupe.8G126500_v2.0.a1 Prupe.8G126500_v2.0.a1 Prupe.8G126500_v2.0.a1 Prupe.8G126500_v2.0.a1 |
| pyrus_communis | pycom05g07680 |
| rosa_chinensis | RchiOBHm_Chr2g0134891 RchiOBHm_Chr6g0257591 |
| rosa_laevigata | RLG00000014704 RLG00000014708 |
| rosa_multiflora | Rmu_sc0004702.1_g000004 |
| rosa_roxburghii | Rroxscaffold_7G00208820 |
| rosa_rugosa | Rorug02G0320700 Rorug05G0570400 |
| rosa_samantha | Rh2AG373000 Rh2CG356900 Rh6AG087200 Rh6BG080500 Rh6CG075800 Rh6DG072600 |
| rosa_wichuraiana | Rw2G030350 Rw6G007750 Rw6G007790 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 668 |
| Acc65I | GGTACC | 1 cut(s) | 656 |
| AccB1I | GGYRCC | 1 cut(s) | 656 |
| AccI | GTMKAC | 1 cut(s) | 25 |
| AccII | CGCG | 1 cut(s) | 1239 |
| AciI | CCGC | 5 cut(s) | 63, 616, 987, 1237, 1239 |
| AclWI | GGATC | 1 cut(s) | 12 |
| AcsI | RAATTY | 1 cut(s) | 606 |
| AcuI | CTGAAG | 1 cut(s) | 1101 |
| AfaI | GTAC | 6 cut(s) | 403, 503, 658, 911, 935, 1038 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 63, 542, 582, 583, 1197 |
| AflII | CTTAAG | 1 cut(s) | 58 |
| AflIII | ACRYGT | 2 cut(s) | 366, 672 |
| AgsI | TTSAA | 6 cut(s) | 199, 331, 413, 811, 955, 1133 |
| AhlI | ACTAGT | 1 cut(s) | 241 |
| AjnI | CCWGG | 2 cut(s) | 421, 946 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1085, 1117 |
| AluBI | AGCT | 6 cut(s) | 266, 797, 805, 872, 992, 1264 |
| AluI | AGCT | 6 cut(s) | 266, 797, 805, 872, 992, 1264 |
| Alw21I | GWGCWC | 2 cut(s) | 43, 1266 |
| Alw26I | GTCTC | 2 cut(s) | 638, 685 |
| Alw44I | GTGCAC | 1 cut(s) | 39 |
| AlwI | GGATC | 1 cut(s) | 12 |
| Ama87I | CYCGRG | 1 cut(s) | 1254 |
| AoxI | GGCC | 1 cut(s) | 585 |
| ApaLI | GTGCAC | 1 cut(s) | 39 |
| ApeKI | GCWGC | 3 cut(s) | 152, 869, 966 |
| ApoI | RAATTY | 1 cut(s) | 606 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 417, 531, 736, 806 |
| Asp718I | GGTACC | 1 cut(s) | 656 |
| AspLEI | GCGC | 1 cut(s) | 187 |
| AspS9I | GGNCC | 1 cut(s) | 585 |
| AsuC2I | CCSGG | 3 cut(s) | 1192, 1255, 1256 |
| AsuHPI | GGTGA | 2 cut(s) | 631, 914 |
| AvaI | CYCGRG | 1 cut(s) | 1254 |
| BaeGI | GKGCMC | 3 cut(s) | 43, 729, 1066 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 840, 873 |
| BamHI | GGATCC | 1 cut(s) | 4 |
| BanI | GGYRCC | 1 cut(s) | 656 |
| BanII | GRGCYC | 1 cut(s) | 1266 |
| BbsI | GAAGAC | 1 cut(s) | 1256 |
| Bbv12I | GWGCWC | 2 cut(s) | 43, 1266 |
| BbvI | GCAGC | 3 cut(s) | 139, 881, 953 |
| BceAI | ACGGC | 1 cut(s) | 979 |
| BciT130I | CCWGG | 2 cut(s) | 423, 948 |
| BclI | TGATCA | 2 cut(s) | 453, 621 |
| BcnI | CCSGG | 3 cut(s) | 1192, 1255, 1256 |
| BcoDI | GTCTC | 2 cut(s) | 638, 685 |
| BcuI | ACTAGT | 1 cut(s) | 241 |
| BfaI | CTAG | 4 cut(s) | 101, 242, 695, 1230 |
| BfmI | CTRYAG | 1 cut(s) | 387 |
| BfrI | CTTAAG | 1 cut(s) | 58 |
| BfuAI | ACCTGC | 1 cut(s) | 668 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 232 |
| BglII | AGATCT | 1 cut(s) | 1220 |
| BisI | GCNGC | 3 cut(s) | 153, 870, 967 |
| BlsI | GCNGC | 3 cut(s) | 154, 871, 968 |
| Bme1390I | CCNGG | 5 cut(s) | 423, 948, 1192, 1255, 1256 |
| BmeT110I | CYCGRG | 1 cut(s) | 1254 |
| BmgT120I | GGNCC | 1 cut(s) | 585 |
| BmiI | GGNNCC | 3 cut(s) | 6, 586, 658 |
| BmrFI | CCNGG | 5 cut(s) | 423, 948, 1192, 1255, 1256 |
| BmsI | GCATC | 7 cut(s) | 57, 195, 268, 501, 691, 912, 1036 |
| BpiI | GAAGAC | 1 cut(s) | 1256 |
| BpuMI | CCSGG | 3 cut(s) | 1192, 1255, 1256 |
| BsaAI | YACGTR | 1 cut(s) | 401 |
| BsaJI | CCNNGG | 3 cut(s) | 541, 1237, 1254 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 63, 542, 582, 583, 1197 |
| BseBI | CCWGG | 2 cut(s) | 423, 948 |
| BseDI | CCNNGG | 3 cut(s) | 541, 1237, 1254 |
| BseGI | GGATG | 4 cut(s) | 72, 210, 436, 606 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 63, 542, 582, 583, 1197 |
| BseMII | CTCAG | 1 cut(s) | 1235 |
| BseRI | GAGGAG | 1 cut(s) | 331 |
| BseSI | GKGCMC | 3 cut(s) | 43, 729, 1066 |
| BseXI | GCAGC | 3 cut(s) | 139, 881, 953 |
| BseYI | CCCAGC | 1 cut(s) | 992 |
| BsgI | GTGCAG | 1 cut(s) | 381 |
| Bsh1236I | CGCG | 1 cut(s) | 1239 |
| BshFI | GGCC | 1 cut(s) | 587 |
| BshNI | GGYRCC | 1 cut(s) | 656 |
| BsiHKAI | GWGCWC | 2 cut(s) | 43, 1266 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1254 |
| BsiSI | CCGG | 2 cut(s) | 1191, 1255 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 63, 542, 582, 583, 1197 |
| BsmAI | GTCTC | 2 cut(s) | 638, 685 |
| BsmI | GAATGC | 3 cut(s) | 558, 757, 1099 |
| BsnI | GGCC | 1 cut(s) | 587 |
| BsoBI | CYCGRG | 1 cut(s) | 1254 |
| Bsp1286I | GDGCHC | 4 cut(s) | 43, 729, 1066, 1266 |
| Bsp1407I | TGTACA | 1 cut(s) | 1036 |
| Bsp143I | GATC | 6 cut(s) | 4, 109, 453, 621, 841, 1220 |
| BspACI | CCGC | 5 cut(s) | 63, 616, 987, 1237, 1239 |
| BspANI | GGCC | 1 cut(s) | 587 |
| BspCNI | CTCAG | 1 cut(s) | 1236 |
| BspFNI | CGCG | 1 cut(s) | 1239 |
| BspLI | GGNNCC | 3 cut(s) | 6, 586, 658 |
| BspMI | ACCTGC | 1 cut(s) | 668 |
| BspPI | GGATC | 1 cut(s) | 12 |
| BspT107I | GGYRCC | 1 cut(s) | 656 |
| BspTI | CTTAAG | 1 cut(s) | 58 |
| BsrGI | TGTACA | 1 cut(s) | 1036 |
| BssECI | CCNNGG | 3 cut(s) | 541, 1237, 1254 |
| BssMI | GATC | 6 cut(s) | 4, 109, 453, 621, 841, 1220 |
| BssT1I | CCWWGG | 1 cut(s) | 541 |
| Bst2UI | CCWGG | 2 cut(s) | 423, 948 |
| Bst4CI | ACNGT | 4 cut(s) | 16, 406, 506, 632 |
| BstAFI | CTTAAG | 1 cut(s) | 58 |
| BstAUI | TGTACA | 1 cut(s) | 1036 |
| BstBAI | YACGTR | 1 cut(s) | 401 |
| BstDEI | CTNAG | 2 cut(s) | 640, 1244 |
| BstDSI | CCRYGG | 1 cut(s) | 1237 |
| BstEII | GGTNACC | 1 cut(s) | 461 |
| BstF5I | GGATG | 4 cut(s) | 72, 210, 436, 606 |
| BstFNI | CGCG | 1 cut(s) | 1239 |
| BstHHI | GCGC | 1 cut(s) | 187 |
| BstKTI | GATC | 6 cut(s) | 7, 112, 456, 624, 844, 1223 |
| BstMAI | GTCTC | 2 cut(s) | 638, 685 |
| BstMBI | GATC | 6 cut(s) | 4, 109, 453, 621, 841, 1220 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 232, 488, 1039 |
| BstNI | CCWGG | 2 cut(s) | 423, 948 |
| BstNSI | RCATGY | 2 cut(s) | 370, 676 |
| BstPI | GGTNACC | 1 cut(s) | 461 |
| BstSCI | CCNGG | 5 cut(s) | 421, 946, 1190, 1253, 1254 |
| BstSFI | CTRYAG | 1 cut(s) | 387 |
| BstSLI | GKGCMC | 3 cut(s) | 43, 729, 1066 |
| BstUI | CGCG | 1 cut(s) | 1239 |
| BstV1I | GCAGC | 3 cut(s) | 139, 881, 953 |
| BstV2I | GAAGAC | 1 cut(s) | 1256 |
| BstX2I | RGATCY | 2 cut(s) | 4, 1220 |
| BstYI | RGATCY | 2 cut(s) | 4, 1220 |
| BsuRI | GGCC | 1 cut(s) | 587 |
| BtgI | CCRYGG | 1 cut(s) | 1237 |
| BtsCI | GGATG | 4 cut(s) | 72, 210, 436, 606 |
| BveI | ACCTGC | 1 cut(s) | 668 |
| CfoI | GCGC | 1 cut(s) | 187 |
| Cfr13I | GGNCC | 1 cut(s) | 585 |
| Cfr42I | CCGCGG | 1 cut(s) | 1240 |
| Cfr9I | CCCGGG | 1 cut(s) | 1254 |
| Csp6I | GTAC | 6 cut(s) | 402, 502, 657, 910, 934, 1037 |
| CviQI | GTAC | 6 cut(s) | 402, 502, 657, 910, 934, 1037 |
| DdeI | CTNAG | 2 cut(s) | 640, 1244 |
| DpnI | GATC | 6 cut(s) | 6, 111, 455, 623, 843, 1222 |
| DpnII | GATC | 6 cut(s) | 4, 109, 453, 621, 841, 1220 |
| EciI | GGCGGA | 1 cut(s) | 1002 |
| Ecl136II | GAGCTC | 1 cut(s) | 1264 |
| Eco130I | CCWWGG | 1 cut(s) | 541 |
| Eco24I | GRGCYC | 1 cut(s) | 1266 |
| Eco53kI | GAGCTC | 1 cut(s) | 1264 |
| Eco57I | CTGAAG | 1 cut(s) | 1101 |
| Eco88I | CYCGRG | 1 cut(s) | 1254 |
| Eco91I | GGTNACC | 1 cut(s) | 461 |
| EcoICRI | GAGCTC | 1 cut(s) | 1264 |
| EcoO109I | RGGNCCY | 1 cut(s) | 585 |
| EcoO65I | GGTNACC | 1 cut(s) | 461 |
| EcoRI | GAATTC | 1 cut(s) | 606 |
| EcoRII | CCWGG | 2 cut(s) | 421, 946 |
| EcoT14I | CCWWGG | 1 cut(s) | 541 |
| EcoT22I | ATGCAT | 1 cut(s) | 706 |
| EcoT38I | GRGCYC | 1 cut(s) | 1266 |
| ErhI | CCWWGG | 1 cut(s) | 541 |
| FauI | CCCGC | 2 cut(s) | 56, 609 |
| FauNDI | CATATG | 1 cut(s) | 918 |
| FbaI | TGATCA | 2 cut(s) | 453, 621 |
| FblI | GTMKAC | 1 cut(s) | 25 |
| Fnu4HI | GCNGC | 3 cut(s) | 153, 870, 967 |
| FokI | GGATG | 4 cut(s) | 79, 217, 443, 613 |
| FriOI | GRGCYC | 1 cut(s) | 1266 |
| Fsp4HI | GCNGC | 3 cut(s) | 153, 870, 967 |
| FspBI | CTAG | 4 cut(s) | 101, 242, 695, 1230 |
| GlaI | GCGC | 1 cut(s) | 186 |
| GluI | GCNGC | 3 cut(s) | 153, 870, 967 |
| GsaI | CCCAGC | 1 cut(s) | 996 |
| HaeIII | GGCC | 1 cut(s) | 587 |
| HapII | CCGG | 2 cut(s) | 1191, 1255 |
| HhaI | GCGC | 1 cut(s) | 187 |
| Hin6I | GCGC | 1 cut(s) | 185 |
| HinP1I | GCGC | 1 cut(s) | 185 |
| HinfI | GANTC | 7 cut(s) | 53, 73, 192, 306, 392, 939, 1139 |
| HpaII | CCGG | 2 cut(s) | 1191, 1255 |
| HphI | GGTGA | 2 cut(s) | 631, 914 |
| Hpy166II | GTNNAC | 4 cut(s) | 26, 41, 364, 502 |
| Hpy188I | TCNGA | 3 cut(s) | 49, 1120, 1144 |
| Hpy188III | TCNNGA | 2 cut(s) | 216, 625 |
| Hpy8I | GTNNAC | 4 cut(s) | 26, 41, 364, 502 |
| HpyAV | CCTTC | 3 cut(s) | 407, 1115, 1196 |
| HpyCH4III | ACNGT | 4 cut(s) | 16, 406, 506, 632 |
| HpyCH4IV | ACGT | 1 cut(s) | 400 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 232, 488, 1039 |
| HpyF3I | CTNAG | 2 cut(s) | 640, 1244 |
| HpySE526I | ACGT | 1 cut(s) | 400 |
| HspAI | GCGC | 1 cut(s) | 185 |
| KpnI | GGTACC | 1 cut(s) | 660 |
| Ksp22I | TGATCA | 2 cut(s) | 453, 621 |
| KspI | CCGCGG | 1 cut(s) | 1240 |
| Kzo9I | GATC | 6 cut(s) | 4, 109, 453, 621, 841, 1220 |
| LmnI | GCTCC | 2 cut(s) | 989, 1261 |
| Lsp1109I | GCAGC | 3 cut(s) | 139, 881, 953 |
| LweI | GCATC | 7 cut(s) | 57, 195, 268, 501, 691, 912, 1036 |
| MaeI | CTAG | 4 cut(s) | 101, 242, 695, 1230 |
| MaeII | ACGT | 1 cut(s) | 400 |
| MaeIII | GTNAC | 4 cut(s) | 10, 461, 742, 847 |
| MalI | GATC | 6 cut(s) | 6, 111, 455, 623, 843, 1222 |
| MboI | GATC | 6 cut(s) | 4, 109, 453, 621, 841, 1220 |
| MboII | GAAGA | 3 cut(s) | 187, 347, 1261 |
| MflI | RGATCY | 2 cut(s) | 4, 1220 |
| MhlI | GDGCHC | 4 cut(s) | 43, 729, 1066, 1266 |
| MluCI | AATT | 7 cut(s) | 147, 269, 531, 606, 905, 1100, 1110 |
| MnlI | CCTC | 5 cut(s) | 309, 481, 820, 892, 1239 |
| Mph1103I | ATGCAT | 1 cut(s) | 706 |
| MroXI | GAANNNNTTC | 4 cut(s) | 417, 531, 736, 806 |
| MseI | TTAA | 6 cut(s) | 59, 222, 272, 834, 1023, 1276 |
| MslI | CAYNNNNRTG | 3 cut(s) | 81, 783, 1092 |
| MspA1I | CMGCKG | 1 cut(s) | 1239 |
| MspCI | CTTAAG | 1 cut(s) | 58 |
| MspI | CCGG | 2 cut(s) | 1191, 1255 |
| MspR9I | CCNGG | 5 cut(s) | 423, 948, 1192, 1255, 1256 |
| Mva1269I | GAATGC | 3 cut(s) | 558, 757, 1099 |
| MvaI | CCWGG | 2 cut(s) | 423, 948 |
| MvnI | CGCG | 1 cut(s) | 1239 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 232, 488, 1039 |
| NciI | CCSGG | 3 cut(s) | 1192, 1255, 1256 |
| NdeI | CATATG | 1 cut(s) | 918 |
| NdeII | GATC | 6 cut(s) | 4, 109, 453, 621, 841, 1220 |
| NlaIV | GGNNCC | 3 cut(s) | 6, 586, 658 |
| NmuCI | GTSAC | 1 cut(s) | 742 |
| NsiI | ATGCAT | 1 cut(s) | 706 |
| NspI | RCATGY | 2 cut(s) | 370, 676 |
| PciI | ACATGT | 2 cut(s) | 366, 672 |
| PctI | GAATGC | 3 cut(s) | 558, 757, 1099 |
| PdmI | GAANNNNTTC | 4 cut(s) | 417, 531, 736, 806 |
| PfeI | GAWTC | 7 cut(s) | 53, 73, 192, 306, 392, 939, 1139 |
| PkrI | GCNGC | 3 cut(s) | 154, 871, 968 |
| Ppu21I | YACGTR | 1 cut(s) | 401 |
| PscI | ACATGT | 2 cut(s) | 366, 672 |
| Psp124BI | GAGCTC | 1 cut(s) | 1266 |
| Psp6I | CCWGG | 2 cut(s) | 421, 946 |
| PspEI | GGTNACC | 1 cut(s) | 461 |
| PspFI | CCCAGC | 1 cut(s) | 992 |
| PspGI | CCWGG | 2 cut(s) | 421, 946 |
| PspN4I | GGNNCC | 3 cut(s) | 6, 586, 658 |
| PspPI | GGNCC | 1 cut(s) | 585 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 620, 652 |
| PsuI | RGATCY | 2 cut(s) | 4, 1220 |
| RsaI | GTAC | 6 cut(s) | 403, 503, 658, 911, 935, 1038 |
| RsaNI | GTAC | 6 cut(s) | 402, 502, 657, 910, 934, 1037 |
| RseI | CAYNNNNRTG | 3 cut(s) | 81, 783, 1092 |
| SacI | GAGCTC | 1 cut(s) | 1266 |
| SacII | CCGCGG | 1 cut(s) | 1240 |
| SaqAI | TTAA | 6 cut(s) | 59, 222, 272, 834, 1023, 1276 |
| SatI | GCNGC | 3 cut(s) | 153, 870, 967 |
| Sau3AI | GATC | 6 cut(s) | 4, 109, 453, 621, 841, 1220 |
| Sau96I | GGNCC | 1 cut(s) | 585 |
| ScrFI | CCNGG | 5 cut(s) | 423, 948, 1192, 1255, 1256 |
| SduI | GDGCHC | 4 cut(s) | 43, 729, 1066, 1266 |
| SfaNI | GCATC | 7 cut(s) | 57, 195, 268, 501, 691, 912, 1036 |
| SfcI | CTRYAG | 1 cut(s) | 387 |
| Sfr303I | CCGCGG | 1 cut(s) | 1240 |
| SgrBI | CCGCGG | 1 cut(s) | 1240 |
| SmaI | CCCGGG | 1 cut(s) | 1256 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 81, 783, 1092 |
| SmlI | CTYRAG | 1 cut(s) | 58 |
| SmoI | CTYRAG | 1 cut(s) | 58 |
| SpeI | ACTAGT | 1 cut(s) | 241 |
| Sse9I | AATT | 7 cut(s) | 147, 269, 531, 606, 905, 1100, 1110 |
| SsiI | CCGC | 5 cut(s) | 63, 616, 987, 1237, 1239 |
| SspMI | CTAG | 4 cut(s) | 101, 242, 695, 1230 |
| SstI | GAGCTC | 1 cut(s) | 1266 |
| StyD4I | CCNGG | 5 cut(s) | 421, 946, 1190, 1253, 1254 |
| StyI | CCWWGG | 1 cut(s) | 541 |
| TaaI | ACNGT | 4 cut(s) | 16, 406, 506, 632 |
| TaiI | ACGT | 1 cut(s) | 403 |
| TasI | AATT | 7 cut(s) | 147, 269, 531, 606, 905, 1100, 1110 |
| TatI | WGTACW | 3 cut(s) | 501, 909, 1036 |
| TfiI | GAWTC | 7 cut(s) | 53, 73, 192, 306, 392, 939, 1139 |
| Tru1I | TTAA | 6 cut(s) | 59, 222, 272, 834, 1023, 1276 |
| Tru9I | TTAA | 6 cut(s) | 59, 222, 272, 834, 1023, 1276 |
| TseFI | GTSAC | 1 cut(s) | 742 |
| TseI | GCWGC | 3 cut(s) | 152, 869, 966 |
| Tsp45I | GTSAC | 1 cut(s) | 742 |
| TspDTI | ATGAA | 8 cut(s) | 65, 290, 298, 429, 510, 599, 767, 905 |
| TspGWI | ACGGA | 1 cut(s) | 951 |
| TspMI | CCCGGG | 1 cut(s) | 1254 |
| Vha464I | CTTAAG | 1 cut(s) | 58 |
| VneI | GTGCAC | 1 cut(s) | 39 |
| XapI | RAATTY | 1 cut(s) | 606 |
| XceI | RCATGY | 2 cut(s) | 370, 676 |
| XmaI | CCCGGG | 1 cut(s) | 1254 |
| XmiI | GTMKAC | 1 cut(s) | 25 |
| XmnI | GAANNNNTTC | 4 cut(s) | 417, 531, 736, 806 |
| XspI | CTAG | 4 cut(s) | 101, 242, 695, 1230 |
| Zsp2I | ATGCAT | 1 cut(s) | 706 |