Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0005453

Physical Location & Seq

Genomic Coordinates Reverse (-)

10550759 .. 10553683

Gene Structure 2925 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g07680.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2463 bp

ATGTTGAGGTTGGTGCCCACCTGCAGAGGTAGGCATGTTTCCAAATTTTTGTCCTCACTTCGACTTTGTTGTCAATCGTTCTCGTCAGCTACAAATACTTTGCAGCTGCCATCAGATGGCTTTGCGAATGATAACAGAAACGATAATATCGATTTTCTATTCCACTCCTGCACAAATGTTCACCATGCTAAGCAACTCCATGCTTATCTTGTGGTGTTGGGAAAATCTCAGAATATCTTTCTTGCTGCCAAGCTTGTCAATCGTTATGCCTACCTTGGCAACGTGTCATTCTCTCGCCGCACATTTGATTCGATACCAAGGAAAGATGTCTATACCTGGAATTCCATGGTATCTGCTTATGTTCGCAGTGGGCGGTTCTGTGAAGCTTTAGATTGTTTCTCTCAGTTTTCGTTGACTTCTGATCTTCATCCTGATTTCTACACCTTTCCTCCTGTCTTGAAAGCTTGTGAGAATCTGGTTGATGGGAAGAAGATACACTGTCGAGTTCTAAAGCTGGGGTTGGAATGGGATGTCTTCGTGGCCGCTTCTTTGATCCATATGTATTCCCGTTTTGGTTTTATTTACGTTGCTCGTAAATTGTTTGATGATATGCCATTTCGAGATACAGGGTCTTGGAATGCAATGATTTCTGGGTTTTGTCAGAATGCAAATGCAGCAGACGCGTTGGATGTCCTGGTTGAAATGAGAATGGAGGGGATAAAGATGGATCGCGTAACTGTCGCAAGTCTGCTTACTGCTTGTGCTCAATCAAATGACATCTCAAGTGGGATGCTGATTCATTTATATGTCATAAAGCATGGACTAGACTTTGATCTGTTTGTATGCAATGCCTTGATTAACATGTACTCCAAATTTGGTAGCTTGGGACATGCACGAAGGATTTTTGATCAAATGGAGGTTAGAGATTTAGTTTCATGGAACTCAATAATTGCTGCATATGAGCAAAATAATGATCCAATCACTGCACTTGAATTATTTAACGCCATGCAACTACTTGGAATTCAGCCCGATTTTTTAACACTAGTGAGTTTGGCTTCAATTTTAGCTCAATTAAGTGACTCCGAAAAGAGTAAGTCTGTTCATGGATTCATCTTGAGGAGAGATTGGTTTGTGGAAGATGTTGTCATTGGAAATGCAGTTGTGGATATGTATGCTAAATTGGGTGCTATAGATTCTGCACGTACTGTTTTTGAAGGACTTCCTACCAAGGATGCTGTTTCATGGAATACTTTGATCACAGGCTATGCTCAAAATGGTCACGCAAGTGAAGCAATTGAAGTGTACCGCATGATGCAACAATGTGAAGAAATAATTCCAAACCATGGAACTTGGGTTAGCATTCTACCAGCATATACCCACGTAGGAGCCTTGCAACAAGGGATGAAAGTACATGGACGGGTGATTAAGAACCGTCTCTACTCAGATGTATTTGTGGGAACCTGCCTGATTGACATGTATGGAAAATGTGGAAGACTAGATGATGCATTGTTTCTGTTCTCCCAAGTTCCTAGGAAGAGTTCGGTCCCTTGGAATGCTTTAATTTCGTGTCATGGAGTTCACGGGCATGGTGAGAAAGCTCTGCAGCTATTCAATGATATGCTAGATGAGGGGGTCGAGCCAGATCATGTCACCTTTGTATCTTTAATGGCAGCGTGTAGCCATTCAGGTTTGGTCGATGAAGGTCAATCATTCTTTCATATGATGCAGGAACAATACGGAATCAAGCCTAGTTTGAAGCACTATGGCTGCATGGTTGATTTGCTTGGTAGAGCCGGGCATTTAAACAAGGCATATAGTTTTATAGAGAATATGTCTGTACGGCCTGATGCTTCTGTGTGGGGTGCTCTACTCGGCGCTTGTAGAATACATGGAAATGTTGAAATGGGCAAGATTGCTTCAGAGCGCTTGTTTGAAGTTGATTCAGAGAACGTGGGTTACTATGTTTTGTTGTCAAACATATACGCAAATTTCGGGAAATGGGAAGGTGTAGAGAAAGTGAGATCTCTGGCCAGAAATCGGGGATTGATGAAGACTCCAGGATGGAGCTCAATAGAAGTGAACAATAACGTTGATGTCTTCTACACTGCAAATCAATCGCATCCAAGGTGCGAAGAAATATACGAGAAGCTGAGGGATCTAACCGCCAGAATGAAGAGCCTCGGTTACATTCCTGACTTCAGCTTCGTGTTGCAGGATGTCGAGGATGACGAGAAAGAGCACATCCTCAACAGCCACAGTGAGAGATTGGCAATTGCATTCGGAATCATCAGTACAGCCCCGAAAACACCCATTCGGATCTTCAAGAACTTGCGGGTTTGCGGCGATTGCCACAACGCAACGAAATTCATATCGGTAATCACGGAGAGGGAGATCATTGTGAGGGATTCTAACCGTTTTCATCATTTTAAAGATGGAACTTGCTCTTGTGGGGATTATTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

821

Amino Acids

92.32

Weight (kDa)

6.46

Isoelectric Point (pI)

35.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005453)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33990 AT4G33990
fragaria_vesca	FvH4_2g05910
malus_domestica	MD05G1081900.v1.1
prunus_persica	Prupe.8G126500_v2.0.a1 Prupe.8G126500_v2.0.a1 Prupe.8G126500_v2.0.a1 Prupe.8G126500_v2.0.a1 Prupe.8G126500_v2.0.a1 Prupe.8G126500_v2.0.a1 Prupe.8G126500_v2.0.a1
pyrus_communis	pycom05g07680
rosa_chinensis	RchiOBHm_Chr2g0134891 RchiOBHm_Chr6g0257591
rosa_laevigata	RLG00000014704 RLG00000014708
rosa_multiflora	Rmu_sc0004702.1_g000004
rosa_roxburghii	Rroxscaffold_7G00208820
rosa_rugosa	Rorug02G0320700 Rorug05G0570400
rosa_samantha	Rh2AG373000 Rh2CG356900 Rh6AG087200 Rh6BG080500 Rh6CG075800 Rh6DG072600
rosa_wichuraiana	Rw2G030350 Rw6G007750 Rw6G007790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	29
AasI	GACNNNNNNGTC	1 cut(s)	69
Acc36I	ACCTGC	2 cut(s)	29, 1469
AccB1I	GGYRCC	1 cut(s)	13
AccB7I	CCANNNNNTGG	2 cut(s)	116, 1343
AccII	CGCG	2 cut(s)	683, 732
AciI	CCGC	7 cut(s)	298, 373, 543, 1306, 2163, 2332, 2340
AclI	AACGTT	1 cut(s)	2088
AclWI	GGATC	5 cut(s)	547, 735, 968, 2163, 2324
AcoI	YGGCCR	2 cut(s)	540, 2028
AcsI	RAATTY	6 cut(s)	44, 340, 872, 1020, 1987, 2363
AcuI	CTGAAG	2 cut(s)	1902, 2182
AfaI	GTAC	6 cut(s)	866, 1204, 1304, 1410, 1839, 2293
AfeI	AGCGCT	1 cut(s)	1925
AfiI	CCNNNNNNNGG	3 cut(s)	116, 1343, 2037
AflIII	ACRYGT	4 cut(s)	282, 681, 861, 1473
AhlI	ACTAGT	1 cut(s)	1042
AjnI	CCWGG	3 cut(s)	335, 693, 2056
AleI	CACNNNNGTG	1 cut(s)	1284
Alw21I	GWGCWC	4 cut(s)	766, 1867, 2069, 2241
Alw26I	GTCTC	1 cut(s)	1439
AlwI	GGATC	5 cut(s)	547, 735, 968, 2163, 2324
Aor51HI	AGCGCT	1 cut(s)	1925
AoxI	GGCC	3 cut(s)	540, 1841, 2028
ApeKI	GCWGC	8 cut(s)	103, 106, 245, 674, 953, 1603, 1670, 1767
ApoI	RAATTY	6 cut(s)	44, 340, 872, 1020, 1987, 2363
ArsI	GACNNNNNNTTYG	2 cut(s)	2186, 2218
Asp700I	GAANNNNTTC	2 cut(s)	1218, 1332
AspA2I	CCTAGG	1 cut(s)	1529
AspLEI	GCGC	2 cut(s)	1877, 1926
AspS9I	GGNCC	1 cut(s)	1543
AsuC2I	CCSGG	1 cut(s)	1795
AsuHPI	GGTGA	4 cut(s)	173, 1432, 1601, 1642
AvaII	GGWCC	1 cut(s)	1543
AvrII	CCTAGG	1 cut(s)	1529
BaeGI	GKGCMC	1 cut(s)	18
BaeI	ACNNNNGTAYC	2 cut(s)	1641, 1674
BalI	TGGCCA	1 cut(s)	2030
BanI	GGYRCC	1 cut(s)	13
BanII	GRGCYC	1 cut(s)	2069
BbsI	GAAGAC	4 cut(s)	526, 1498, 2057, 2089
Bbv12I	GWGCWC	4 cut(s)	766, 1867, 2069, 2241
BbvCI	CCTCAGC	1 cut(s)	2150
BbvI	GCAGC	8 cut(s)	93, 115, 232, 686, 940, 1615, 1682, 1754
BccI	CCATC	6 cut(s)	110, 118, 476, 718, 2055, 2426
BceAI	ACGGC	1 cut(s)	1856
BcgI	CGANNNNNNTGC	2 cut(s)	2097, 2131
BciT130I	CCWGG	3 cut(s)	337, 695, 2058
BclI	TGATCA	2 cut(s)	907, 1254
BcnI	CCSGG	1 cut(s)	1795
BcoDI	GTCTC	1 cut(s)	1439
BcuI	ACTAGT	1 cut(s)	1042
BfaI	CTAG	6 cut(s)	824, 1043, 1496, 1530, 1622, 1749
BfmI	CTRYAG	3 cut(s)	22, 1188, 1601
BfoI	RGCGCY	2 cut(s)	1878, 1927
BfuAI	ACCTGC	2 cut(s)	29, 1469
BglII	AGATCT	1 cut(s)	2021
BlnI	CCTAGG	1 cut(s)	1529
BlpI	GCTNAGC	1 cut(s)	189
Bme1390I	CCNGG	4 cut(s)	337, 695, 1795, 2058
Bme18I	GGWCC	1 cut(s)	1543
BmgT120I	GGNCC	1 cut(s)	1543
BmiI	GGNNCC	4 cut(s)	15, 1387, 1459, 1545
BmrFI	CCNGG	4 cut(s)	337, 695, 1795, 2058
BmsI	GCATC	7 cut(s)	780, 1222, 1302, 1492, 1713, 1837, 2128
BpiI	GAAGAC	4 cut(s)	526, 1498, 2057, 2089
BpmI	CTGGAG	1 cut(s)	2040
Bpu10I	CCTNAGC	1 cut(s)	2150
Bpu1102I	GCTNAGC	1 cut(s)	189
BpuEI	CTTGAG	2 cut(s)	766, 1135
BpuMI	CCSGG	1 cut(s)	1795
Bsa29I	ATCGAT	1 cut(s)	150
BsaAI	YACGTR	2 cut(s)	1202, 1381
BsaBI	GATNNNNATC	1 cut(s)	426
BsaJI	CCNNGG	9 cut(s)	274, 317, 345, 1227, 1342, 1529, 1547, 2123, 2179
BsaXI	ACNNNNNCTCC	4 cut(s)	433, 463, 851, 881
Bsc4I	CCNNNNNNNGG	3 cut(s)	116, 1343, 2037
Bse3DI	GCAATG	2 cut(s)	648, 853
Bse8I	GATNNNNATC	1 cut(s)	426
BseBI	CCWGG	3 cut(s)	337, 695, 2058
BseCI	ATCGAT	1 cut(s)	150
BseDI	CCNNGG	9 cut(s)	274, 317, 345, 1227, 1342, 1529, 1547, 2123, 2179
BseJI	GATNNNNATC	1 cut(s)	426
BseLI	CCNNNNNNNGG	3 cut(s)	116, 1343, 2037
BseMI	GCAATG	2 cut(s)	648, 853
BseMII	CTCAG	4 cut(s)	242, 416, 1455, 2141
BseRI	GAGGAG	1 cut(s)	1132
BseSI	GKGCMC	1 cut(s)	18
BseXI	GCAGC	8 cut(s)	93, 115, 232, 686, 940, 1615, 1682, 1754
BseYI	CCCAGC	1 cut(s)	514
BsgI	GTGCAG	3 cut(s)	154, 969, 1182
Bsh1236I	CGCG	2 cut(s)	683, 732
BshFI	GGCC	3 cut(s)	542, 1843, 2030
BshNI	GGYRCC	1 cut(s)	13
BshVI	ATCGAT	1 cut(s)	150
BsiHKAI	GWGCWC	4 cut(s)	766, 1867, 2069, 2241
BsiSI	CCGG	1 cut(s)	1794
BslFI	GGGAC	2 cut(s)	900, 1529
BslI	CCNNNNNNNGG	3 cut(s)	116, 1343, 2037
BsmAI	GTCTC	1 cut(s)	1439
BsmBI	CGTCTC	1 cut(s)	1439
BsmFI	GGGAC	2 cut(s)	900, 1529
BsmI	GAATGC	5 cut(s)	643, 670, 1359, 1558, 2276
BsnI	GGCC	3 cut(s)	542, 1843, 2030
Bsp1286I	GDGCHC	5 cut(s)	18, 766, 1867, 2069, 2241
Bsp1720I	GCTNAGC	1 cut(s)	189
Bsp19I	CCATGG	2 cut(s)	345, 1342
BspACI	CCGC	7 cut(s)	298, 373, 543, 1306, 2163, 2332, 2340
BspANI	GGCC	3 cut(s)	542, 1843, 2030
BspCNI	CTCAG	4 cut(s)	241, 415, 1454, 2142
BspDI	ATCGAT	1 cut(s)	150
BspFNI	CGCG	2 cut(s)	683, 732
BspLI	GGNNCC	4 cut(s)	15, 1387, 1459, 1545
BspMAI	CTGCAG	2 cut(s)	26, 1605
BspMI	ACCTGC	2 cut(s)	29, 1469
BspPI	GGATC	5 cut(s)	547, 735, 968, 2163, 2324
BspQI	GCTCTTC	1 cut(s)	2168
BspT107I	GGYRCC	1 cut(s)	13
BsrDI	GCAATG	2 cut(s)	648, 853
BssECI	CCNNGG	9 cut(s)	274, 317, 345, 1227, 1342, 1529, 1547, 2123, 2179
BssT1I	CCWWGG	8 cut(s)	274, 317, 345, 1227, 1342, 1529, 1547, 2123
Bst2UI	CCWGG	3 cut(s)	337, 695, 2058
Bst4CI	ACNGT	6 cut(s)	500, 739, 1207, 1433, 2258, 2414
Bst6I	CTCTTC	2 cut(s)	1529, 2168
BstBAI	YACGTR	2 cut(s)	1202, 1381
BstDEI	CTNAG	5 cut(s)	189, 228, 402, 1441, 2150
BstDSI	CCRYGG	2 cut(s)	345, 1342
BstFNI	CGCG	2 cut(s)	683, 732
BstH2I	RGCGCY	2 cut(s)	1878, 1927
BstHHI	GCGC	2 cut(s)	1877, 1926
BstMAI	GTCTC	1 cut(s)	1439
BstMWI	GCNNNNNNNGC	4 cut(s)	674, 680, 1289, 2346
BstNI	CCWGG	3 cut(s)	337, 695, 2058
BstNSI	RCATGY	4 cut(s)	38, 865, 893, 1477
BstSCI	CCNGG	4 cut(s)	335, 693, 1793, 2056
BstSFI	CTRYAG	3 cut(s)	22, 1188, 1601
BstSLI	GKGCMC	1 cut(s)	18
BstUI	CGCG	2 cut(s)	683, 732
BstV1I	GCAGC	8 cut(s)	93, 115, 232, 686, 940, 1615, 1682, 1754
BstV2I	GAAGAC	4 cut(s)	526, 1498, 2057, 2089
BstX2I	RGATCY	3 cut(s)	2021, 2155, 2316
BstYI	RGATCY	3 cut(s)	2021, 2155, 2316
Bsu15I	ATCGAT	1 cut(s)	150
BsuRI	GGCC	3 cut(s)	542, 1843, 2030
BsuTUI	ATCGAT	1 cut(s)	150
BtgI	CCRYGG	2 cut(s)	345, 1342
BtsI	GCAGTG	3 cut(s)	373, 981, 2103
BtsIMutI	CAGTG	5 cut(s)	373, 496, 981, 2103, 2263
BveI	ACCTGC	2 cut(s)	29, 1469
CfoI	GCGC	2 cut(s)	1877, 1926
Cfr13I	GGNCC	1 cut(s)	1543
ClaI	ATCGAT	1 cut(s)	150
CseI	GACGC	1 cut(s)	689
Csp6I	GTAC	6 cut(s)	865, 1203, 1303, 1409, 1838, 2292
CviQI	GTAC	6 cut(s)	865, 1203, 1303, 1409, 1838, 2292
DdeI	CTNAG	5 cut(s)	189, 228, 402, 1441, 2150
DraI	TTTAAA	2 cut(s)	1803, 2428
DrdI	GACNNNNNNGTC	1 cut(s)	69
DseDI	GACNNNNNNGTC	1 cut(s)	69
EaeI	YGGCCR	2 cut(s)	540, 2028
Eam1104I	CTCTTC	2 cut(s)	1529, 2168
EarI	CTCTTC	2 cut(s)	1529, 2168
Ecl136II	GAGCTC	1 cut(s)	2067
Eco130I	CCWWGG	8 cut(s)	274, 317, 345, 1227, 1342, 1529, 1547, 2123
Eco24I	GRGCYC	1 cut(s)	2069
Eco47I	GGWCC	1 cut(s)	1543
Eco47III	AGCGCT	1 cut(s)	1925
Eco53kI	GAGCTC	1 cut(s)	2067
Eco57I	CTGAAG	2 cut(s)	1902, 2182
EcoICRI	GAGCTC	1 cut(s)	2067
EcoRI	GAATTC	2 cut(s)	340, 1020
EcoRII	CCWGG	3 cut(s)	335, 693, 2056
EcoT14I	CCWWGG	8 cut(s)	274, 317, 345, 1227, 1342, 1529, 1547, 2123
EcoT22I	ATGCAT	1 cut(s)	1507
EcoT38I	GRGCYC	1 cut(s)	2069
ErhI	CCWWGG	8 cut(s)	274, 317, 345, 1227, 1342, 1529, 1547, 2123
Esp3I	CGTCTC	1 cut(s)	1439
FaqI	GGGAC	2 cut(s)	900, 1529
FauI	CCCGC	1 cut(s)	2325
FauNDI	CATATG	3 cut(s)	558, 958, 1719
FbaI	TGATCA	2 cut(s)	907, 1254
FriOI	GRGCYC	1 cut(s)	2069
FspBI	CTAG	6 cut(s)	824, 1043, 1496, 1530, 1622, 1749
GlaI	GCGC	2 cut(s)	1876, 1925
GsaI	CCCAGC	1 cut(s)	518
GsuI	CTGGAG	1 cut(s)	2040
HaeII	RGCGCY	2 cut(s)	1878, 1927
HaeIII	GGCC	3 cut(s)	542, 1843, 2030
HapII	CCGG	1 cut(s)	1794
HgaI	GACGC	1 cut(s)	689
HhaI	GCGC	2 cut(s)	1877, 1926
Hin6I	GCGC	2 cut(s)	1875, 1924
HinP1I	GCGC	2 cut(s)	1875, 1924
HincII	GTYRAC	1 cut(s)	414
HindII	GTYRAC	1 cut(s)	414
HindIII	AAGCTT	3 cut(s)	251, 384, 462
HpaII	CCGG	1 cut(s)	1794
HphI	GGTGA	4 cut(s)	173, 1432, 1601, 1642
Hpy166II	GTNNAC	5 cut(s)	181, 414, 1303, 1579, 2080
Hpy188III	TCNNGA	7 cut(s)	431, 457, 620, 1114, 1993, 2192, 2323
Hpy8I	GTNNAC	5 cut(s)	181, 414, 1303, 1579, 2080
HpyAV	CCTTC	4 cut(s)	891, 1208, 1694, 1997
HpyCH4III	ACNGT	6 cut(s)	500, 739, 1207, 1433, 2258, 2414
HpyCH4IV	ACGT	6 cut(s)	282, 585, 1201, 1380, 1950, 2088
HpyF10VI	GCNNNNNNNGC	4 cut(s)	674, 680, 1289, 2346
HpyF3I	CTNAG	5 cut(s)	189, 228, 402, 1441, 2150
HpySE526I	ACGT	6 cut(s)	282, 585, 1201, 1380, 1950, 2088
HspAI	GCGC	2 cut(s)	1875, 1924
Ksp22I	TGATCA	2 cut(s)	907, 1254
LguI	GCTCTTC	1 cut(s)	2168
LmnI	GCTCC	2 cut(s)	1385, 2064
Lsp1109I	GCAGC	8 cut(s)	93, 115, 232, 686, 940, 1615, 1682, 1754
LweI	GCATC	7 cut(s)	780, 1222, 1302, 1492, 1713, 1837, 2128
MaeI	CTAG	6 cut(s)	824, 1043, 1496, 1530, 1622, 1749
MaeII	ACGT	6 cut(s)	282, 585, 1201, 1380, 1950, 2088
MaeIII	GTNAC	6 cut(s)	733, 1076, 1277, 1648, 1955, 2183
MfeI	CAATTG	2 cut(s)	1293, 2271
MflI	RGATCY	3 cut(s)	2021, 2155, 2316
MhlI	GDGCHC	5 cut(s)	18, 766, 1867, 2069, 2241
MlsI	TGGCCA	1 cut(s)	2030
MluI	ACGCGT	1 cut(s)	681
MluNI	TGGCCA	1 cut(s)	2030
MlyI	GAGTC	2 cut(s)	1073, 2047
MmeI	TCCRAC	2 cut(s)	501, 666
Mox20I	TGGCCA	1 cut(s)	2030
Mph1103I	ATGCAT	1 cut(s)	1507
MroXI	GAANNNNTTC	2 cut(s)	1218, 1332
MscI	TGGCCA	1 cut(s)	2030
MseI	TTAA	9 cut(s)	858, 999, 1037, 1073, 1425, 1559, 1664, 1802, 2427
MslI	CAYNNNNRTG	4 cut(s)	804, 1284, 1584, 1893
Msp20I	TGGCCA	1 cut(s)	2030
MspA1I	CMGCKG	1 cut(s)	106
MspI	CCGG	1 cut(s)	1794
MspR9I	CCNGG	4 cut(s)	337, 695, 1795, 2058
MunI	CAATTG	2 cut(s)	1293, 2271
Mva1269I	GAATGC	5 cut(s)	643, 670, 1359, 1558, 2276
MvaI	CCWGG	3 cut(s)	337, 695, 2058
MvnI	CGCG	2 cut(s)	683, 732
MwoI	GCNNNNNNNGC	4 cut(s)	674, 680, 1289, 2346
NciI	CCSGG	1 cut(s)	1795
NcoI	CCATGG	2 cut(s)	345, 1342
NdeI	CATATG	3 cut(s)	558, 958, 1719
NlaIV	GGNNCC	4 cut(s)	15, 1387, 1459, 1545
NmeAIII	GCCGAG	1 cut(s)	1851
NmuCI	GTSAC	3 cut(s)	1076, 1277, 1648
NsiI	ATGCAT	1 cut(s)	1507
NspI	RCATGY	4 cut(s)	38, 865, 893, 1477
OliI	CACNNNNGTG	1 cut(s)	1284
PaqCI	CACCTGC	1 cut(s)	29
PciI	ACATGT	2 cut(s)	861, 1473
PciSI	GCTCTTC	1 cut(s)	2168
PcsI	WCGNNNNNNNCGW	2 cut(s)	147, 2226
PctI	GAATGC	5 cut(s)	643, 670, 1359, 1558, 2276
PdmI	GAANNNNTTC	2 cut(s)	1218, 1332
PfeI	GAWTC	9 cut(s)	308, 472, 796, 1107, 1193, 1740, 1940, 2283, 2405
PflMI	CCANNNNNTGG	2 cut(s)	116, 1343
PfoI	TCCNGGA	1 cut(s)	2056
PleI	GAGTC	2 cut(s)	1073, 2047
PpsI	GAGTC	2 cut(s)	1073, 2047
Ppu21I	YACGTR	2 cut(s)	1202, 1381
PscI	ACATGT	2 cut(s)	861, 1473
Psp124BI	GAGCTC	1 cut(s)	2069
Psp1406I	AACGTT	1 cut(s)	2088
Psp6I	CCWGG	3 cut(s)	335, 693, 2056
PspFI	CCCAGC	1 cut(s)	514
PspGI	CCWGG	3 cut(s)	335, 693, 2056
PspN4I	GGNNCC	4 cut(s)	15, 1387, 1459, 1545
PspPI	GGNCC	1 cut(s)	1543
PsrI	GAACNNNNNNTAC	4 cut(s)	1421, 1453, 1940, 1972
PstI	CTGCAG	2 cut(s)	26, 1605
PsuI	RGATCY	3 cut(s)	2021, 2155, 2316
PvuII	CAGCTG	1 cut(s)	106
RsaI	GTAC	6 cut(s)	866, 1204, 1304, 1410, 1839, 2293
RsaNI	GTAC	6 cut(s)	865, 1203, 1303, 1409, 1838, 2292
RseI	CAYNNNNRTG	4 cut(s)	804, 1284, 1584, 1893
SacI	GAGCTC	1 cut(s)	2069
SapI	GCTCTTC	1 cut(s)	2168
SaqAI	TTAA	9 cut(s)	858, 999, 1037, 1073, 1425, 1559, 1664, 1802, 2427
Sau96I	GGNCC	1 cut(s)	1543
SchI	GAGTC	2 cut(s)	1073, 2047
ScrFI	CCNGG	4 cut(s)	337, 695, 1795, 2058
SduI	GDGCHC	5 cut(s)	18, 766, 1867, 2069, 2241
SfaNI	GCATC	7 cut(s)	780, 1222, 1302, 1492, 1713, 1837, 2128
SfcI	CTRYAG	3 cut(s)	22, 1188, 1601
SinI	GGWCC	1 cut(s)	1543
SmiMI	CAYNNNNRTG	4 cut(s)	804, 1284, 1584, 1893
SmlI	CTYRAG	2 cut(s)	781, 1114
SmoI	CTYRAG	2 cut(s)	781, 1114
SpeI	ACTAGT	1 cut(s)	1042
SsiI	CCGC	7 cut(s)	298, 373, 543, 1306, 2163, 2332, 2340
SspMI	CTAG	6 cut(s)	824, 1043, 1496, 1530, 1622, 1749
SstI	GAGCTC	1 cut(s)	2069
StyD4I	CCNGG	4 cut(s)	335, 693, 1793, 2056
StyI	CCWWGG	8 cut(s)	274, 317, 345, 1227, 1342, 1529, 1547, 2123
TaaI	ACNGT	6 cut(s)	500, 739, 1207, 1433, 2258, 2414
TaiI	ACGT	6 cut(s)	285, 588, 1204, 1383, 1953, 2091
TaqI	TCGA	8 cut(s)	61, 150, 311, 502, 619, 1635, 1695, 2220
TaqII	GACCGA	1 cut(s)	1531
TatI	WGTACW	3 cut(s)	864, 1408, 2291
TauI	GCSGC	3 cut(s)	300, 545, 2343
TfiI	GAWTC	9 cut(s)	308, 472, 796, 1107, 1193, 1740, 1940, 2283, 2405
Tru1I	TTAA	9 cut(s)	858, 999, 1037, 1073, 1425, 1559, 1664, 1802, 2427
Tru9I	TTAA	9 cut(s)	858, 999, 1037, 1073, 1425, 1559, 1664, 1802, 2427
TscAI	CASTG	5 cut(s)	373, 503, 988, 2110, 2263
TseFI	GTSAC	3 cut(s)	1076, 1277, 1648
TseI	GCWGC	8 cut(s)	103, 106, 245, 674, 953, 1603, 1670, 1767
Tsp45I	GTSAC	3 cut(s)	1076, 1277, 1648
TspGWI	ACGGA	2 cut(s)	1752, 2396
TspRI	CASTG	5 cut(s)	373, 503, 988, 2110, 2263
Van91I	CCANNNNNTGG	2 cut(s)	116, 1343
VpaK11BI	GGWCC	1 cut(s)	1543
XapI	RAATTY	6 cut(s)	44, 340, 872, 1020, 1987, 2363
XceI	RCATGY	4 cut(s)	38, 865, 893, 1477
XmaJI	CCTAGG	1 cut(s)	1529
XmnI	GAANNNNTTC	2 cut(s)	1218, 1332
XspI	CTAG	6 cut(s)	824, 1043, 1496, 1530, 1622, 1749
Zsp2I	ATGCAT	1 cut(s)	1507

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.