Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0005453

Physical Location & Seq

Genomic Coordinates Forward (+)

12869254 .. 12870405

Gene Structure 1152 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G007750.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1152 bp

ATGCAAGAGTGCAAAGAAATAATTCCAAACCAAGGAACTTGGGTTAGCATTCTACCAGCATATACACACTTAGGGGCCTTGCAACAAGGGATGAGAATTCATGGGCGGGTGATCAAGAACTCTCTCTACTTGGATGTATTTGTGGGTACCTGCTTGATTGACATGTATGGAAAATGTGGGAGACTAGATGATGCATTATCATTATTCTACCAAGTGCCCAGAATGAGTTCGGTCACTTGGAATGCCATGATTTCCTGTCTTGGGGTTCATGGGCATGGTGGGAAAGCTGTGATGCTATTCAAAAATATGATAGATGAAGGGGTTAAGCCAGATCCTGTAACCTTTGTATCTCTAATGGCAGCTTGTAGTCATTCAGGTTTGGTCAATGAGGGTGAATTGTACTTTCATATGATGCAGAAAGAGTATGGAATCAAGCCTGGTTTGAAGCACTACTGCTGCATGGTAGATTTACTTGGCAGAGCTGGGCATTTAGACAAGGCATATAGTTTCATTAAGACTATGCCTGTGCAGCCTGATGCTTCTGTTTGGGGGGCACTACTTGGTGCTTGTAGAATACATGGGAATGCTGAATTGGGGAAAATTGCTTCAGAAGGCTTGTTTGAAGTCGATTCGGAAAATGTGGGCTACTATGTTTTGTTGTCAAATATATATGCAACAACTGGGAAATGGGAAGGTGTGGATAAAGTGAGATCTATGGCTAGAAACCGCGGACTGAGGAAGACTCCCGGGTGGAGCTCAATAGAAGTTAACAATAAAGTTGATGTCTTTTATACTGGGAACCAAACGCATCCATTATGCGAACAGATATACCAGAAGTTGAGGGAACTAAATGAGAAAATGAAGAGCCTTGGTTATGTTCCAGACTTCAGCTTTGTATTGCAGGATGTCGAGGATGACGAGAAAGAGCATATCCTCACAAGTCATAGTGAGAGATTGGCAATTGCTTTCGGAATCATTAGCACGCCTCCTAAAACTCCCATTCGGATCTTCAAGAACCTGAGGGTTTGCGGTGATTGCCACAATGTGATGAAACTCATATCAGTAATTACGGAGAGGGAGATCATTGTGAGGGATTCAAACCGTTTCCACCATTTCAAGGATGGAACTTGCTGTTGTGGGGATTATTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

383

Amino Acids

43.03

Weight (kDa)

7.2

Isoelectric Point (pI)

31.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	76 - 123	1e-11	PPR repeat family
PPR	PF01535	78 - 108	3.8e-07	PPR repeat
E_motif	PF20431	193 - 255	1.1e-17	E motif
DYW_deaminase	PF14432	291 - 383	1.2e-44	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005453)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33990 AT4G33990
fragaria_vesca	FvH4_2g05910
malus_domestica	MD05G1081900.v1.1
prunus_persica	Prupe.8G126500_v2.0.a1 Prupe.8G126500_v2.0.a1 Prupe.8G126500_v2.0.a1 Prupe.8G126500_v2.0.a1 Prupe.8G126500_v2.0.a1 Prupe.8G126500_v2.0.a1 Prupe.8G126500_v2.0.a1
pyrus_communis	pycom05g07680
rosa_chinensis	RchiOBHm_Chr2g0134891 RchiOBHm_Chr6g0257591
rosa_laevigata	RLG00000014704 RLG00000014708
rosa_multiflora	Rmu_sc0004702.1_g000004
rosa_roxburghii	Rroxscaffold_7G00208820
rosa_rugosa	Rorug02G0320700 Rorug05G0570400
rosa_samantha	Rh2AG373000 Rh2CG356900 Rh6AG087200 Rh6BG080500 Rh6CG075800 Rh6DG072600
rosa_wichuraiana	Rw2G030350 Rw6G007750 Rw6G007790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	158
Acc65I	GGTACC	1 cut(s)	146
AccB1I	GGYRCC	1 cut(s)	146
AccII	CGCG	1 cut(s)	729
AciI	CCGC	4 cut(s)	106, 727, 729, 1029
AclWI	GGATC	2 cut(s)	326, 1013
AcsI	RAATTY	1 cut(s)	96
AcuI	CTGAAG	2 cut(s)	591, 871
AdeI	CACNNNGTG	1 cut(s)	1045
AfaI	GTAC	2 cut(s)	148, 401
AfiI	CCNNNNNNNGG	3 cut(s)	32, 261, 1117
AflIII	ACRYGT	1 cut(s)	162
AgsI	TTSAA	6 cut(s)	301, 445, 623, 1012, 1098, 1117
AjnI	CCWGG	1 cut(s)	436
AjuI	GAANNNNNNNTTGG	2 cut(s)	575, 607
AluBI	AGCT	5 cut(s)	287, 362, 482, 756, 891
AluI	AGCT	5 cut(s)	287, 362, 482, 756, 891
Alw21I	GWGCWC	1 cut(s)	758
Alw26I	GTCTC	1 cut(s)	175
AlwI	GGATC	2 cut(s)	326, 1013
AlwNI	CAGNNNCTG	1 cut(s)	335
Ama87I	CYCGRG	1 cut(s)	746
AoxI	GGCC	1 cut(s)	75
ApeKI	GCWGC	3 cut(s)	359, 456, 529
ApoI	RAATTY	1 cut(s)	96
ArsI	GACNNNNNNTTYG	2 cut(s)	875, 907
Asp700I	GAANNNNTTC	2 cut(s)	21, 226
Asp718I	GGTACC	1 cut(s)	146
AspS9I	GGNCC	1 cut(s)	75
AsuC2I	CCSGG	2 cut(s)	747, 748
AsuHPI	GGTGA	3 cut(s)	121, 404, 1043
AvaI	CYCGRG	1 cut(s)	746
AxyI	CCTNAGG	1 cut(s)	1019
BaeGI	GKGCMC	2 cut(s)	219, 556
BaeI	ACNNNNGTAYC	2 cut(s)	330, 363
BanI	GGYRCC	1 cut(s)	146
BanII	GRGCYC	1 cut(s)	758
BbsI	GAAGAC	1 cut(s)	746
Bbv12I	GWGCWC	1 cut(s)	758
BbvI	GCAGC	3 cut(s)	371, 443, 541
BccI	CCATC	1 cut(s)	1115
BciT130I	CCWGG	1 cut(s)	438
BclI	TGATCA	1 cut(s)	111
BcnI	CCSGG	2 cut(s)	747, 748
BcoDI	GTCTC	1 cut(s)	175
BfaI	CTAG	2 cut(s)	185, 720
BfuAI	ACCTGC	1 cut(s)	158
BglII	AGATCT	1 cut(s)	710
BisI	GCNGC	3 cut(s)	360, 457, 530
BlsI	GCNGC	3 cut(s)	361, 458, 531
Bme1390I	CCNGG	3 cut(s)	438, 747, 748
BmeT110I	CYCGRG	1 cut(s)	746
BmgT120I	GGNCC	1 cut(s)	75
BmiI	GGNNCC	3 cut(s)	76, 148, 800
BmrFI	CCNGG	3 cut(s)	438, 747, 748
BmrI	ACTGGG	2 cut(s)	690, 804
BmsI	GCATC	5 cut(s)	181, 282, 402, 526, 817
BmuI	ACTGGG	2 cut(s)	690, 804
BpiI	GAAGAC	1 cut(s)	746
BplI	GAGNNNNNCTC	2 cut(s)	727, 759
BpuMI	CCSGG	2 cut(s)	747, 748
BsaJI	CCNNGG	4 cut(s)	31, 727, 746, 868
Bsc4I	CCNNNNNNNGG	3 cut(s)	32, 261, 1117
Bse1I	ACTGG	2 cut(s)	685, 799
Bse21I	CCTNAGG	1 cut(s)	1019
BseBI	CCWGG	1 cut(s)	438
BseDI	CCNNGG	4 cut(s)	31, 727, 746, 868
BseGI	GGATG	6 cut(s)	96, 139, 808, 910, 919, 1126
BseLI	CCNNNNNNNGG	3 cut(s)	32, 261, 1117
BseMII	CTCAG	2 cut(s)	725, 1010
BseNI	ACTGG	2 cut(s)	685, 799
BseSI	GKGCMC	2 cut(s)	219, 556
BseXI	GCAGC	3 cut(s)	371, 443, 541
BseYI	CCCAGC	1 cut(s)	482
BsgI	GTGCAG	1 cut(s)	548
Bsh1236I	CGCG	1 cut(s)	729
BshFI	GGCC	1 cut(s)	77
BshNI	GGYRCC	1 cut(s)	146
BsiHKAI	GWGCWC	1 cut(s)	758
BsiHKCI	CYCGRG	1 cut(s)	746
BsiSI	CCGG	1 cut(s)	747
BslI	CCNNNNNNNGG	3 cut(s)	32, 261, 1117
BsmAI	GTCTC	1 cut(s)	175
BsmI	GAATGC	3 cut(s)	48, 247, 589
BsnI	GGCC	1 cut(s)	77
BsoBI	CYCGRG	1 cut(s)	746
Bsp1286I	GDGCHC	3 cut(s)	219, 556, 758
Bsp143I	GATC	5 cut(s)	111, 331, 710, 1005, 1080
BspACI	CCGC	4 cut(s)	106, 727, 729, 1029
BspANI	GGCC	1 cut(s)	77
BspCNI	CTCAG	2 cut(s)	726, 1011
BspFNI	CGCG	1 cut(s)	729
BspLI	GGNNCC	3 cut(s)	76, 148, 800
BspMI	ACCTGC	1 cut(s)	158
BspPI	GGATC	2 cut(s)	326, 1013
BspQI	GCTCTTC	1 cut(s)	857
BspT107I	GGYRCC	1 cut(s)	146
BsrI	ACTGG	2 cut(s)	685, 799
BssECI	CCNNGG	4 cut(s)	31, 727, 746, 868
BssMI	GATC	5 cut(s)	111, 331, 710, 1005, 1080
BssT1I	CCWWGG	2 cut(s)	31, 868
Bst2UI	CCWGG	1 cut(s)	438
Bst4CI	ACNGT	1 cut(s)	1103
Bst6I	CTCTTC	1 cut(s)	857
BstC8I	GCNNGC	1 cut(s)	983
BstDEI	CTNAG	3 cut(s)	70, 734, 1019
BstDSI	CCRYGG	1 cut(s)	727
BstF5I	GGATG	6 cut(s)	96, 139, 808, 910, 919, 1126
BstFNI	CGCG	1 cut(s)	729
BstKTI	GATC	5 cut(s)	114, 334, 713, 1008, 1083
BstMAI	GTCTC	1 cut(s)	175
BstMBI	GATC	5 cut(s)	111, 331, 710, 1005, 1080
BstMWI	GCNNNNNNNGC	2 cut(s)	529, 1035
BstNI	CCWGG	1 cut(s)	438
BstNSI	RCATGY	1 cut(s)	166
BstSCI	CCNGG	3 cut(s)	436, 745, 746
BstSLI	GKGCMC	2 cut(s)	219, 556
BstUI	CGCG	1 cut(s)	729
BstV1I	GCAGC	3 cut(s)	371, 443, 541
BstV2I	GAAGAC	1 cut(s)	746
BstX2I	RGATCY	3 cut(s)	331, 710, 1005
BstYI	RGATCY	3 cut(s)	331, 710, 1005
Bsu36I	CCTNAGG	1 cut(s)	1019
BsuRI	GGCC	1 cut(s)	77
BtgI	CCRYGG	1 cut(s)	727
BtsCI	GGATG	6 cut(s)	96, 139, 808, 910, 919, 1126
BveI	ACCTGC	1 cut(s)	158
Cac8I	GCNNGC	1 cut(s)	983
CaiI	CAGNNNCTG	1 cut(s)	335
Cfr13I	GGNCC	1 cut(s)	75
Cfr42I	CCGCGG	1 cut(s)	730
Cfr9I	CCCGGG	1 cut(s)	746
Csp6I	GTAC	2 cut(s)	147, 400
CviAII	CATG	7 cut(s)	101, 163, 247, 269, 275, 460, 578
CviQI	GTAC	2 cut(s)	147, 400
DdeI	CTNAG	3 cut(s)	70, 734, 1019
DpnI	GATC	5 cut(s)	113, 333, 712, 1007, 1082
DpnII	GATC	5 cut(s)	111, 331, 710, 1005, 1080
DraIII	CACNNNGTG	1 cut(s)	1045
Eam1104I	CTCTTC	1 cut(s)	857
EarI	CTCTTC	1 cut(s)	857
Ecl136II	GAGCTC	1 cut(s)	756
Eco130I	CCWWGG	2 cut(s)	31, 868
Eco24I	GRGCYC	1 cut(s)	758
Eco53kI	GAGCTC	1 cut(s)	756
Eco57I	CTGAAG	2 cut(s)	591, 871
Eco81I	CCTNAGG	1 cut(s)	1019
Eco88I	CYCGRG	1 cut(s)	746
EcoICRI	GAGCTC	1 cut(s)	756
EcoO109I	RGGNCCY	1 cut(s)	75
EcoRI	GAATTC	1 cut(s)	96
EcoRII	CCWGG	1 cut(s)	436
EcoT14I	CCWWGG	2 cut(s)	31, 868
EcoT22I	ATGCAT	1 cut(s)	196
EcoT38I	GRGCYC	1 cut(s)	758
ErhI	CCWWGG	2 cut(s)	31, 868
FaeI	CATG	7 cut(s)	104, 166, 250, 272, 278, 463, 581
FatI	CATG	7 cut(s)	100, 162, 246, 268, 274, 459, 577
FauI	CCCGC	1 cut(s)	99
FauNDI	CATATG	1 cut(s)	408
FbaI	TGATCA	1 cut(s)	111
Fnu4HI	GCNGC	3 cut(s)	360, 457, 530
FokI	GGATG	6 cut(s)	103, 146, 795, 917, 926, 1133
FriOI	GRGCYC	1 cut(s)	758
Fsp4HI	GCNGC	3 cut(s)	360, 457, 530
FspBI	CTAG	2 cut(s)	185, 720
GluI	GCNGC	3 cut(s)	360, 457, 530
GsaI	CCCAGC	1 cut(s)	486
HaeIII	GGCC	1 cut(s)	77
HapII	CCGG	1 cut(s)	747
Hin1II	CATG	7 cut(s)	104, 166, 250, 272, 278, 463, 581
HincII	GTYRAC	1 cut(s)	769
HindII	GTYRAC	1 cut(s)	769
HinfI	GANTC	5 cut(s)	429, 629, 742, 972, 1094
HpaI	GTTAAC	1 cut(s)	769
HpaII	CCGG	1 cut(s)	747
HphI	GGTGA	3 cut(s)	121, 404, 1043
Hpy166II	GTNNAC	1 cut(s)	769
Hpy188I	TCNGA	4 cut(s)	610, 634, 971, 1005
Hpy188III	TCNNGA	3 cut(s)	115, 881, 1012
Hpy8I	GTNNAC	1 cut(s)	769
HpyAV	CCTTC	3 cut(s)	311, 605, 686
HpyCH4III	ACNGT	1 cut(s)	1103
HpyCH4V	TGCA	9 cut(s)	4, 12, 82, 194, 415, 459, 529, 674, 901
HpyF10VI	GCNNNNNNNGC	2 cut(s)	529, 1035
HpyF3I	CTNAG	3 cut(s)	70, 734, 1019
Hsp92II	CATG	7 cut(s)	104, 166, 250, 272, 278, 463, 581
KpnI	GGTACC	1 cut(s)	150
Ksp22I	TGATCA	1 cut(s)	111
KspAI	GTTAAC	1 cut(s)	769
KspI	CCGCGG	1 cut(s)	730
Kzo9I	GATC	5 cut(s)	111, 331, 710, 1005, 1080
LguI	GCTCTTC	1 cut(s)	857
LmnI	GCTCC	1 cut(s)	753
Lsp1109I	GCAGC	3 cut(s)	371, 443, 541
LweI	GCATC	5 cut(s)	181, 282, 402, 526, 817
MaeI	CTAG	2 cut(s)	185, 720
MaeIII	GTNAC	2 cut(s)	232, 337
MalI	GATC	5 cut(s)	113, 333, 712, 1007, 1082
MboI	GATC	5 cut(s)	111, 331, 710, 1005, 1080
MboII	GAAGA	3 cut(s)	751, 874, 1000
MfeI	CAATTG	1 cut(s)	960
MflI	RGATCY	3 cut(s)	331, 710, 1005
MhlI	GDGCHC	3 cut(s)	219, 556, 758
MluCI	AATT	7 cut(s)	21, 96, 395, 590, 600, 960, 1065
MlyI	GAGTC	1 cut(s)	736
MnlI	CCTC	9 cut(s)	382, 729, 834, 904, 944, 996, 1014, 1068, 1083
Mph1103I	ATGCAT	1 cut(s)	196
MroXI	GAANNNNTTC	2 cut(s)	21, 226
MseI	TTAA	3 cut(s)	324, 513, 768
MslI	CAYNNNNRTG	2 cut(s)	273, 582
MspA1I	CMGCKG	1 cut(s)	729
MspI	CCGG	1 cut(s)	747
MspR9I	CCNGG	3 cut(s)	438, 747, 748
MunI	CAATTG	1 cut(s)	960
Mva1269I	GAATGC	3 cut(s)	48, 247, 589
MvaI	CCWGG	1 cut(s)	438
MvnI	CGCG	1 cut(s)	729
MwoI	GCNNNNNNNGC	2 cut(s)	529, 1035
NciI	CCSGG	2 cut(s)	747, 748
NdeI	CATATG	1 cut(s)	408
NdeII	GATC	5 cut(s)	111, 331, 710, 1005, 1080
NlaIII	CATG	7 cut(s)	104, 166, 250, 272, 278, 463, 581
NlaIV	GGNNCC	3 cut(s)	76, 148, 800
NmuCI	GTSAC	1 cut(s)	232
NsiI	ATGCAT	1 cut(s)	196
NspI	RCATGY	1 cut(s)	166
PciI	ACATGT	1 cut(s)	162
PciSI	GCTCTTC	1 cut(s)	857
PcsI	WCGNNNNNNNCGW	1 cut(s)	915
PctI	GAATGC	3 cut(s)	48, 247, 589
PdmI	GAANNNNTTC	2 cut(s)	21, 226
PfeI	GAWTC	4 cut(s)	429, 629, 972, 1094
PkrI	GCNGC	3 cut(s)	361, 458, 531
PleI	GAGTC	1 cut(s)	736
PpsI	GAGTC	1 cut(s)	736
PscI	ACATGT	1 cut(s)	162
Psp124BI	GAGCTC	1 cut(s)	758
Psp6I	CCWGG	1 cut(s)	436
PspFI	CCCAGC	1 cut(s)	482
PspGI	CCWGG	1 cut(s)	436
PspN4I	GGNNCC	3 cut(s)	76, 148, 800
PspPI	GGNCC	1 cut(s)	75
PsrI	GAACNNNNNNTAC	2 cut(s)	110, 142
PstNI	CAGNNNCTG	1 cut(s)	335
PsuI	RGATCY	3 cut(s)	331, 710, 1005
RsaI	GTAC	2 cut(s)	148, 401
RsaNI	GTAC	2 cut(s)	147, 400
RseI	CAYNNNNRTG	2 cut(s)	273, 582
SacI	GAGCTC	1 cut(s)	758
SacII	CCGCGG	1 cut(s)	730
SapI	GCTCTTC	1 cut(s)	857
SaqAI	TTAA	3 cut(s)	324, 513, 768
SatI	GCNGC	3 cut(s)	360, 457, 530
Sau3AI	GATC	5 cut(s)	111, 331, 710, 1005, 1080
Sau96I	GGNCC	1 cut(s)	75
SchI	GAGTC	1 cut(s)	736
ScrFI	CCNGG	3 cut(s)	438, 747, 748
SduI	GDGCHC	3 cut(s)	219, 556, 758
SfaNI	GCATC	5 cut(s)	181, 282, 402, 526, 817
Sfr303I	CCGCGG	1 cut(s)	730
SgrBI	CCGCGG	1 cut(s)	730
SmaI	CCCGGG	1 cut(s)	748
SmiMI	CAYNNNNRTG	2 cut(s)	273, 582
Sse9I	AATT	7 cut(s)	21, 96, 395, 590, 600, 960, 1065
SsiI	CCGC	4 cut(s)	106, 727, 729, 1029
SspMI	CTAG	2 cut(s)	185, 720
SstI	GAGCTC	1 cut(s)	758
StyD4I	CCNGG	3 cut(s)	436, 745, 746
StyI	CCWWGG	2 cut(s)	31, 868
TaaI	ACNGT	1 cut(s)	1103
TaqI	TCGA	2 cut(s)	627, 909
TaqII	GACCGA	1 cut(s)	220
TasI	AATT	7 cut(s)	21, 96, 395, 590, 600, 960, 1065
TatI	WGTACW	1 cut(s)	399
TfiI	GAWTC	4 cut(s)	429, 629, 972, 1094
Tru1I	TTAA	3 cut(s)	324, 513, 768
Tru9I	TTAA	3 cut(s)	324, 513, 768
TseFI	GTSAC	1 cut(s)	232
TseI	GCWGC	3 cut(s)	359, 456, 529
Tsp45I	GTSAC	1 cut(s)	232
TspDTI	ATGAA	7 cut(s)	89, 257, 330, 395, 499, 875, 1064
TspGWI	ACGGA	1 cut(s)	1085
TspMI	CCCGGG	1 cut(s)	746
XapI	RAATTY	1 cut(s)	96
XceI	RCATGY	1 cut(s)	166
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1118
XmaI	CCCGGG	1 cut(s)	746
XmnI	GAANNNNTTC	2 cut(s)	21, 226
XspI	CTAG	2 cut(s)	185, 720
Zsp2I	ATGCAT	1 cut(s)	196

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.