Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0005453

Physical Location & Seq

Genomic Coordinates Reverse (-)

17169226 .. 17172389

Gene Structure 3164 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1081900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2463 bp

ATGTTGAGGTTGGTGCCCACCTGCAGAGGTAGGCATGTTTCCAAATTTTTGTCCTCACATCGACTTTGTTGTCAATCGTTCTCATCAACTACAAATACTTTGCAGCTGCCATCAGATGGCTTTGCGAATGATAACAGAAATGATAATATCGATTTTCTATTCCACTCCTGCACAAATGTTCACCATGCTAAGCAACTCCATGCTTATCTTGTGGTGTTGGGAAAATCTCAGAATATCTTTCTTGCTGCCAAGCTTGTCAATCGTTATGCCTACCTTGGCGACTTGTCATTCTCTCGCCGCACATTTGATTCGATACCAAGGAAAGATGTCTATACCTGGAATTCCATGGTATCTGCTTATGTTCGCAGCGGGCGCTTCCGTGAAGCTTTAGATTGTTTCTCTCAGTTTTCGTTGACTTCTGATCTTCATCCTGATTTCTACACCTTTCCTCCTGTCTTGAAAGCTTGTGAGAATCTGGTTGACGGGAAGAAGATACACTGTCGAGTTCTAAAGCTGGGGTTCGAATGGGATGTCTTCGTGGCCGCTTCTTTGATCCATATGTATTCCCGTTTTGGTTTTATTTACGTTGCTCGTAAATTGTTTGATGATATGCCAATTCGAGATACAGGGTCTTGGAATGCAATGATTTCTGGGTTTTGTCAGAATGCAAATGCAGCAGACGCATTGGATGTCCTGGTTGAAATGAGAATGGAGGGGATAAAGATGGATCGCGTAACTGTTGCAAGTCTGCTGACTGCTTGTGCTCAATCAAACGACATCTCAAGCGGGAGGCTGATTCATTTATATGTCATAAAGCATGGACTGGACTTTGATCTGTTTGTATGCAATGCCTTGATTAACATGTATTCCAAATTTGGTAGCTTGGGACATGCACGAAGGGTTTTTGATCAAATGGAGGTTAGAGATTTAGTTTCATGGAACTCAATAGTTGCTGCATATGAGCAGAATAATGATCCAATCACTGCACTTGAATTATTTAACGCCATGCAATTACGCGGAATTCAGCCCGATTTTTTAACACTAGTGAGTTTGGCTTCAATTTTAGCTCAATTAAGTGACTCCGAAAAGAGTAAGTCTGTTCATGGATTCATCTTGAGGAGAGATTGGTTTGTGGAAGATGTTGTCATTGGAAATGCAGTTGTGGATATGTATGCTAAATTAGGTGCTATAGATTCCGCACGTACTGTTTTTGAAGGACTTCCTACCAAGGATGCTGTTTCATGGAATACTTTGATCACAGGCTATGCTCAAAATGGTCACGCAAGTGAAGCAATTGAAGTGTACCGCATGATGCAACAATGCAAAGAAATAATTCCAAACCATGGAACTTGGGTTAGCATTCTACCAGCATATACCCACGTGGGAGCCTTGCAACAAGGGATGAAAGTACATGGACGGGTGATTAAGAACCGTGTCTACTCAGATGTATTTGTGGGAACCTGCTTGATTGACATGTATGGAAAATGTGGAAGACTAGATGATGCATTGTGTCTGTTCTCCCAAGTTCCTAGGAAGAGTTCGGTCCCTTGGAATGCTTTAATTTCGTGTCATGGAGTTCATGGGCATGGTGAGAAAGCTCTGCAGCTATTCAATGATATGCTAGATGAGGGGGTCAAGCCAGATCATGTCACCTTTGTATCTTTAATGGCAGCGTGTAGCCATTCAGGTTTGGTCAATGAAGGTCAATCGTTCTTTCATACGATGCAGGAACAATACGGAATCAAGCCTAGTTTGAAGCACTATGGCTGCATGGTTGATTTGCTTGGTAGAGCCGGGCATTTAAACAAGGCATATAGTTTTATAGAGAATATGTCTGTACGGCCTGATGCGTCTGTGTGGGGTGCTCTACTCGGCGCTTGTAGAATACATGGAAATGTTGAAATGGGCAAGATTGCTTCCGAACGCTTGTTTGAAGTTGATTCAGAGAACGTGGGTTACTATGTTTTGTTGTCAAACATATATGCAAATTTCGGGAAATGGGAAGGTGTAGAGAAAGTGAGATCTCTGGCCAGAAATCGGGGACTGACGAAGACTCCAGGATGGAGCTCAATAGAAGTGAATAATAACGTTGATGTCTTCTACACTGCAAATCAATCGCATCCAAAGTGCGAAGAAATATATGAGAAGCTGAGGGATCTAACCGCCAGAATGAAGAGCCTCGGTTACATTCCTGACTTGAGCTTCGTGTTGCAGGATGTCGAGGATGACGAGAAAGAGCACATCCTTAACAGCCACAGTGAGAGATTGGCAATTGCATTCGGAATCATCAGTACAGCCCCGAAAACACCCATTCGGATCTTCAAGAACTTGCGGGTTTGCGGCGATTGCCACAACGCAACGAAATTCATATCGGTAATCACGGAGAGGGAGATCATTGTGAGGGATTCTAACCGTTTTCATCATTTTAAAGATGGAACTTGCTCTTGTGGGGATTATTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

821

Amino Acids

92.29

Weight (kDa)

7.17

Isoelectric Point (pI)

34.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR	PF01535	111 - 134	6e-06	PPR repeat
PPR_2	PF13041	208 - 255	1.1e-09	PPR repeat family
PPR_2	PF13041	309 - 351	4.8e-07	PPR repeat family
PPR_2	PF13041	411 - 457	7.2e-08	PPR repeat family
PPR	PF01535	413 - 441	1.5e-07	PPR repeat
PPR_2	PF13041	513 - 560	3.6e-12	PPR repeat family
PPR	PF01535	516 - 545	1.1e-06	PPR repeat
E_motif	PF20431	630 - 692	1.5e-19	E motif
DYW_deaminase	PF14432	728 - 820	3.9e-44	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005453)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33990 AT4G33990
fragaria_vesca	FvH4_2g05910
malus_domestica	MD05G1081900.v1.1
prunus_persica	Prupe.8G126500_v2.0.a1 Prupe.8G126500_v2.0.a1 Prupe.8G126500_v2.0.a1 Prupe.8G126500_v2.0.a1 Prupe.8G126500_v2.0.a1 Prupe.8G126500_v2.0.a1 Prupe.8G126500_v2.0.a1
pyrus_communis	pycom05g07680
rosa_chinensis	RchiOBHm_Chr2g0134891 RchiOBHm_Chr6g0257591
rosa_laevigata	RLG00000014704 RLG00000014708
rosa_multiflora	Rmu_sc0004702.1_g000004
rosa_roxburghii	Rroxscaffold_7G00208820
rosa_rugosa	Rorug02G0320700 Rorug05G0570400
rosa_samantha	Rh2AG373000 Rh2CG356900 Rh6AG087200 Rh6BG080500 Rh6CG075800 Rh6DG072600
rosa_wichuraiana	Rw2G030350 Rw6G007750 Rw6G007790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	29
AasI	GACNNNNNNGTC	1 cut(s)	69
Acc36I	ACCTGC	2 cut(s)	29, 1469
AccB1I	GGYRCC	1 cut(s)	13
AccB7I	CCANNNNNTGG	2 cut(s)	116, 1343
AccI	GTMKAC	1 cut(s)	1437
AccII	CGCG	2 cut(s)	732, 1017
AclI	AACGTT	1 cut(s)	2088
AclWI	GGATC	5 cut(s)	547, 735, 968, 2163, 2324
AcoI	YGGCCR	2 cut(s)	540, 2028
AcsI	RAATTY	6 cut(s)	44, 340, 872, 1020, 1987, 2363
AcvI	CACGTG	1 cut(s)	1381
AfaI	GTAC	5 cut(s)	1204, 1304, 1410, 1839, 2293
AfiI	CCNNNNNNNGG	3 cut(s)	116, 1343, 2037
AflIII	ACRYGT	2 cut(s)	861, 1473
AhlI	ACTAGT	1 cut(s)	1042
AjnI	CCWGG	3 cut(s)	335, 693, 2056
AleI	CACNNNNGTG	1 cut(s)	1284
Alw21I	GWGCWC	4 cut(s)	766, 1867, 2069, 2241
AlwI	GGATC	5 cut(s)	547, 735, 968, 2163, 2324
AoxI	GGCC	3 cut(s)	540, 1841, 2028
ApeKI	GCWGC	9 cut(s)	103, 106, 245, 366, 674, 953, 1603, 1670, 1767
ApoI	RAATTY	6 cut(s)	44, 340, 872, 1020, 1987, 2363
ArsI	GACNNNNNNTTYG	4 cut(s)	516, 548, 2186, 2218
Asp700I	GAANNNNTTC	2 cut(s)	1218, 1332
AspA2I	CCTAGG	1 cut(s)	1529
AspLEI	GCGC	2 cut(s)	375, 1877
AspS9I	GGNCC	1 cut(s)	1543
AsuC2I	CCSGG	1 cut(s)	1795
AsuHPI	GGTGA	4 cut(s)	173, 1432, 1601, 1642
AsuII	TTCGAA	1 cut(s)	522
AvaII	GGWCC	1 cut(s)	1543
AvrII	CCTAGG	1 cut(s)	1529
BaeGI	GKGCMC	1 cut(s)	18
BaeI	ACNNNNGTAYC	2 cut(s)	1641, 1674
BalI	TGGCCA	1 cut(s)	2030
BanI	GGYRCC	1 cut(s)	13
BanII	GRGCYC	1 cut(s)	2069
BbrPI	CACGTG	1 cut(s)	1381
BbsI	GAAGAC	4 cut(s)	526, 1498, 2057, 2089
Bbv12I	GWGCWC	4 cut(s)	766, 1867, 2069, 2241
BbvCI	CCTCAGC	1 cut(s)	2150
BbvI	GCAGC	9 cut(s)	93, 115, 232, 378, 686, 940, 1615, 1682, 1754
BccI	CCATC	5 cut(s)	110, 118, 718, 2055, 2426
BceAI	ACGGC	1 cut(s)	1856
BcgI	CGANNNNNNTGC	2 cut(s)	2097, 2131
BciT130I	CCWGG	3 cut(s)	337, 695, 2058
BclI	TGATCA	2 cut(s)	907, 1254
BcnI	CCSGG	1 cut(s)	1795
BcuI	ACTAGT	1 cut(s)	1042
BfaI	CTAG	5 cut(s)	1043, 1496, 1530, 1622, 1749
BfmI	CTRYAG	3 cut(s)	22, 1188, 1601
BfoI	RGCGCY	2 cut(s)	376, 1878
BfuAI	ACCTGC	2 cut(s)	29, 1469
BglII	AGATCT	1 cut(s)	2021
BlnI	CCTAGG	1 cut(s)	1529
BlpI	GCTNAGC	1 cut(s)	189
Bme1390I	CCNGG	4 cut(s)	337, 695, 1795, 2058
Bme18I	GGWCC	1 cut(s)	1543
BmgT120I	GGNCC	1 cut(s)	1543
BmiI	GGNNCC	4 cut(s)	15, 1387, 1459, 1545
BmrFI	CCNGG	4 cut(s)	337, 695, 1795, 2058
BmsI	GCATC	6 cut(s)	1222, 1302, 1492, 1713, 1837, 2128
BpiI	GAAGAC	4 cut(s)	526, 1498, 2057, 2089
BpmI	CTGGAG	1 cut(s)	2040
Bpu10I	CCTNAGC	1 cut(s)	2150
Bpu1102I	GCTNAGC	1 cut(s)	189
Bpu14I	TTCGAA	1 cut(s)	522
BpuEI	CTTGAG	3 cut(s)	766, 1135, 2218
BpuMI	CCSGG	1 cut(s)	1795
Bsa29I	ATCGAT	1 cut(s)	150
BsaAI	YACGTR	2 cut(s)	1202, 1381
BsaBI	GATNNNNATC	1 cut(s)	426
BsaJI	CCNNGG	8 cut(s)	274, 317, 345, 1227, 1342, 1529, 1547, 2179
BsaXI	ACNNNNNCTCC	4 cut(s)	433, 463, 2038, 2068
Bsc4I	CCNNNNNNNGG	3 cut(s)	116, 1343, 2037
Bse1I	ACTGG	1 cut(s)	828
Bse3DI	GCAATG	2 cut(s)	648, 853
Bse8I	GATNNNNATC	1 cut(s)	426
BseBI	CCWGG	3 cut(s)	337, 695, 2058
BseCI	ATCGAT	1 cut(s)	150
BseDI	CCNNGG	8 cut(s)	274, 317, 345, 1227, 1342, 1529, 1547, 2179
BseJI	GATNNNNATC	1 cut(s)	426
BseLI	CCNNNNNNNGG	3 cut(s)	116, 1343, 2037
BseMI	GCAATG	2 cut(s)	648, 853
BseMII	CTCAG	4 cut(s)	242, 416, 1455, 2141
BseNI	ACTGG	1 cut(s)	828
BseRI	GAGGAG	1 cut(s)	1132
BseSI	GKGCMC	1 cut(s)	18
BseXI	GCAGC	9 cut(s)	93, 115, 232, 378, 686, 940, 1615, 1682, 1754
BseYI	CCCAGC	1 cut(s)	514
BsgI	GTGCAG	2 cut(s)	154, 969
Bsh1236I	CGCG	2 cut(s)	732, 1017
BshFI	GGCC	3 cut(s)	542, 1843, 2030
BshNI	GGYRCC	1 cut(s)	13
BshVI	ATCGAT	1 cut(s)	150
BsiHKAI	GWGCWC	4 cut(s)	766, 1867, 2069, 2241
BsiSI	CCGG	1 cut(s)	1794
BslFI	GGGAC	3 cut(s)	900, 1529, 2055
BslI	CCNNNNNNNGG	3 cut(s)	116, 1343, 2037
BsmFI	GGGAC	3 cut(s)	900, 1529, 2055
BsmI	GAATGC	5 cut(s)	643, 670, 1359, 1558, 2276
BsnI	GGCC	3 cut(s)	542, 1843, 2030
Bsp119I	TTCGAA	1 cut(s)	522
Bsp1286I	GDGCHC	5 cut(s)	18, 766, 1867, 2069, 2241
Bsp1720I	GCTNAGC	1 cut(s)	189
Bsp19I	CCATGG	2 cut(s)	345, 1342
BspANI	GGCC	3 cut(s)	542, 1843, 2030
BspCNI	CTCAG	4 cut(s)	241, 415, 1454, 2142
BspDI	ATCGAT	1 cut(s)	150
BspFNI	CGCG	2 cut(s)	732, 1017
BspLI	GGNNCC	4 cut(s)	15, 1387, 1459, 1545
BspMAI	CTGCAG	2 cut(s)	26, 1605
BspMI	ACCTGC	2 cut(s)	29, 1469
BspPI	GGATC	5 cut(s)	547, 735, 968, 2163, 2324
BspQI	GCTCTTC	1 cut(s)	2168
BspT104I	TTCGAA	1 cut(s)	522
BspT107I	GGYRCC	1 cut(s)	13
BsrDI	GCAATG	2 cut(s)	648, 853
BsrI	ACTGG	1 cut(s)	828
BssECI	CCNNGG	8 cut(s)	274, 317, 345, 1227, 1342, 1529, 1547, 2179
BssT1I	CCWWGG	7 cut(s)	274, 317, 345, 1227, 1342, 1529, 1547
Bst2UI	CCWGG	3 cut(s)	337, 695, 2058
Bst4CI	ACNGT	6 cut(s)	500, 739, 1207, 1433, 2258, 2414
Bst6I	CTCTTC	2 cut(s)	1529, 2168
BstBAI	YACGTR	2 cut(s)	1202, 1381
BstBI	TTCGAA	1 cut(s)	522
BstC8I	GCNNGC	1 cut(s)	371
BstDEI	CTNAG	5 cut(s)	189, 228, 402, 1441, 2150
BstDSI	CCRYGG	2 cut(s)	345, 1342
BstFNI	CGCG	2 cut(s)	732, 1017
BstH2I	RGCGCY	2 cut(s)	376, 1878
BstHHI	GCGC	2 cut(s)	375, 1877
BstMWI	GCNNNNNNNGC	5 cut(s)	372, 674, 680, 1289, 2346
BstNI	CCWGG	3 cut(s)	337, 695, 2058
BstNSI	RCATGY	4 cut(s)	38, 865, 893, 1477
BstSCI	CCNGG	4 cut(s)	335, 693, 1793, 2056
BstSFI	CTRYAG	3 cut(s)	22, 1188, 1601
BstSLI	GKGCMC	1 cut(s)	18
BstUI	CGCG	2 cut(s)	732, 1017
BstV1I	GCAGC	9 cut(s)	93, 115, 232, 378, 686, 940, 1615, 1682, 1754
BstV2I	GAAGAC	4 cut(s)	526, 1498, 2057, 2089
BstX2I	RGATCY	3 cut(s)	2021, 2155, 2316
BstYI	RGATCY	3 cut(s)	2021, 2155, 2316
Bsu15I	ATCGAT	1 cut(s)	150
BsuRI	GGCC	3 cut(s)	542, 1843, 2030
BsuTUI	ATCGAT	1 cut(s)	150
BtgI	CCRYGG	2 cut(s)	345, 1342
BtsI	GCAGTG	2 cut(s)	981, 2103
BtsIMutI	CAGTG	4 cut(s)	496, 981, 2103, 2263
BveI	ACCTGC	2 cut(s)	29, 1469
Cac8I	GCNNGC	1 cut(s)	371
CfoI	GCGC	2 cut(s)	375, 1877
Cfr13I	GGNCC	1 cut(s)	1543
ClaI	ATCGAT	1 cut(s)	150
CseI	GACGC	2 cut(s)	689, 1839
Csp6I	GTAC	5 cut(s)	1203, 1303, 1409, 1838, 2292
CviQI	GTAC	5 cut(s)	1203, 1303, 1409, 1838, 2292
DdeI	CTNAG	5 cut(s)	189, 228, 402, 1441, 2150
DraI	TTTAAA	2 cut(s)	1803, 2428
DrdI	GACNNNNNNGTC	1 cut(s)	69
DseDI	GACNNNNNNGTC	1 cut(s)	69
EaeI	YGGCCR	2 cut(s)	540, 2028
Eam1104I	CTCTTC	2 cut(s)	1529, 2168
EarI	CTCTTC	2 cut(s)	1529, 2168
Ecl136II	GAGCTC	1 cut(s)	2067
Eco130I	CCWWGG	7 cut(s)	274, 317, 345, 1227, 1342, 1529, 1547
Eco24I	GRGCYC	1 cut(s)	2069
Eco47I	GGWCC	1 cut(s)	1543
Eco53kI	GAGCTC	1 cut(s)	2067
Eco72I	CACGTG	1 cut(s)	1381
EcoICRI	GAGCTC	1 cut(s)	2067
EcoRI	GAATTC	2 cut(s)	340, 1020
EcoRII	CCWGG	3 cut(s)	335, 693, 2056
EcoT14I	CCWWGG	7 cut(s)	274, 317, 345, 1227, 1342, 1529, 1547
EcoT22I	ATGCAT	1 cut(s)	1507
EcoT38I	GRGCYC	1 cut(s)	2069
ErhI	CCWWGG	7 cut(s)	274, 317, 345, 1227, 1342, 1529, 1547
FaqI	GGGAC	3 cut(s)	900, 1529, 2055
FauI	CCCGC	3 cut(s)	362, 779, 2325
FauNDI	CATATG	2 cut(s)	558, 958
FbaI	TGATCA	2 cut(s)	907, 1254
FblI	GTMKAC	1 cut(s)	1437
FriOI	GRGCYC	1 cut(s)	2069
FspBI	CTAG	5 cut(s)	1043, 1496, 1530, 1622, 1749
GlaI	GCGC	2 cut(s)	374, 1876
GsaI	CCCAGC	1 cut(s)	518
GsuI	CTGGAG	1 cut(s)	2040
HaeII	RGCGCY	2 cut(s)	376, 1878
HaeIII	GGCC	3 cut(s)	542, 1843, 2030
HapII	CCGG	1 cut(s)	1794
HgaI	GACGC	2 cut(s)	689, 1839
HhaI	GCGC	2 cut(s)	375, 1877
Hin6I	GCGC	2 cut(s)	373, 1875
HinP1I	GCGC	2 cut(s)	373, 1875
HincII	GTYRAC	2 cut(s)	414, 481
HindII	GTYRAC	2 cut(s)	414, 481
HindIII	AAGCTT	3 cut(s)	251, 384, 462
HpaII	CCGG	1 cut(s)	1794
HphI	GGTGA	4 cut(s)	173, 1432, 1601, 1642
Hpy166II	GTNNAC	5 cut(s)	181, 414, 481, 1303, 1438
Hpy188III	TCNNGA	7 cut(s)	431, 457, 620, 1114, 1993, 2192, 2323
Hpy8I	GTNNAC	5 cut(s)	181, 414, 481, 1303, 1438
HpyAV	CCTTC	4 cut(s)	891, 1208, 1694, 1997
HpyCH4III	ACNGT	6 cut(s)	500, 739, 1207, 1433, 2258, 2414
HpyCH4IV	ACGT	5 cut(s)	585, 1201, 1380, 1950, 2088
HpyF10VI	GCNNNNNNNGC	5 cut(s)	372, 674, 680, 1289, 2346
HpyF3I	CTNAG	5 cut(s)	189, 228, 402, 1441, 2150
HpySE526I	ACGT	5 cut(s)	585, 1201, 1380, 1950, 2088
HspAI	GCGC	2 cut(s)	373, 1875
Ksp22I	TGATCA	2 cut(s)	907, 1254
LguI	GCTCTTC	1 cut(s)	2168
LmnI	GCTCC	2 cut(s)	1385, 2064
Lsp1109I	GCAGC	9 cut(s)	93, 115, 232, 378, 686, 940, 1615, 1682, 1754
LweI	GCATC	6 cut(s)	1222, 1302, 1492, 1713, 1837, 2128
MaeI	CTAG	5 cut(s)	1043, 1496, 1530, 1622, 1749
MaeII	ACGT	5 cut(s)	585, 1201, 1380, 1950, 2088
MaeIII	GTNAC	6 cut(s)	733, 1076, 1277, 1648, 1955, 2183
MfeI	CAATTG	2 cut(s)	1293, 2271
MflI	RGATCY	3 cut(s)	2021, 2155, 2316
MhlI	GDGCHC	5 cut(s)	18, 766, 1867, 2069, 2241
MlsI	TGGCCA	1 cut(s)	2030
MluNI	TGGCCA	1 cut(s)	2030
MlyI	GAGTC	2 cut(s)	1073, 2047
Mox20I	TGGCCA	1 cut(s)	2030
Mph1103I	ATGCAT	1 cut(s)	1507
MroXI	GAANNNNTTC	2 cut(s)	1218, 1332
MscI	TGGCCA	1 cut(s)	2030
MslI	CAYNNNNRTG	4 cut(s)	804, 1284, 1584, 1893
Msp20I	TGGCCA	1 cut(s)	2030
MspA1I	CMGCKG	2 cut(s)	106, 369
MspI	CCGG	1 cut(s)	1794
MspR9I	CCNGG	4 cut(s)	337, 695, 1795, 2058
MunI	CAATTG	2 cut(s)	1293, 2271
Mva1269I	GAATGC	5 cut(s)	643, 670, 1359, 1558, 2276
MvaI	CCWGG	3 cut(s)	337, 695, 2058
MvnI	CGCG	2 cut(s)	732, 1017
MwoI	GCNNNNNNNGC	5 cut(s)	372, 674, 680, 1289, 2346
NciI	CCSGG	1 cut(s)	1795
NcoI	CCATGG	2 cut(s)	345, 1342
NdeI	CATATG	2 cut(s)	558, 958
NlaIV	GGNNCC	4 cut(s)	15, 1387, 1459, 1545
NmeAIII	GCCGAG	1 cut(s)	1851
NmuCI	GTSAC	3 cut(s)	1076, 1277, 1648
NsiI	ATGCAT	1 cut(s)	1507
NspI	RCATGY	4 cut(s)	38, 865, 893, 1477
NspV	TTCGAA	1 cut(s)	522
OliI	CACNNNNGTG	1 cut(s)	1284
PaqCI	CACCTGC	1 cut(s)	29
PciI	ACATGT	2 cut(s)	861, 1473
PciSI	GCTCTTC	1 cut(s)	2168
PcsI	WCGNNNNNNNCGW	1 cut(s)	2226
PctI	GAATGC	5 cut(s)	643, 670, 1359, 1558, 2276
PdmI	GAANNNNTTC	2 cut(s)	1218, 1332
PfeI	GAWTC	9 cut(s)	308, 472, 796, 1107, 1193, 1740, 1940, 2283, 2405
PflMI	CCANNNNNTGG	2 cut(s)	116, 1343
PfoI	TCCNGGA	1 cut(s)	2056
PleI	GAGTC	2 cut(s)	1073, 2047
PmaCI	CACGTG	1 cut(s)	1381
PmlI	CACGTG	1 cut(s)	1381
PpsI	GAGTC	2 cut(s)	1073, 2047
Ppu21I	YACGTR	2 cut(s)	1202, 1381
PscI	ACATGT	2 cut(s)	861, 1473
Psp124BI	GAGCTC	1 cut(s)	2069
Psp1406I	AACGTT	1 cut(s)	2088
Psp6I	CCWGG	3 cut(s)	335, 693, 2056
PspCI	CACGTG	1 cut(s)	1381
PspFI	CCCAGC	1 cut(s)	514
PspGI	CCWGG	3 cut(s)	335, 693, 2056
PspN4I	GGNNCC	4 cut(s)	15, 1387, 1459, 1545
PspPI	GGNCC	1 cut(s)	1543
PsrI	GAACNNNNNNTAC	4 cut(s)	1421, 1453, 1940, 1972
PstI	CTGCAG	2 cut(s)	26, 1605
PsuI	RGATCY	3 cut(s)	2021, 2155, 2316
PvuII	CAGCTG	1 cut(s)	106
RsaI	GTAC	5 cut(s)	1204, 1304, 1410, 1839, 2293
RsaNI	GTAC	5 cut(s)	1203, 1303, 1409, 1838, 2292
RseI	CAYNNNNRTG	4 cut(s)	804, 1284, 1584, 1893
SacI	GAGCTC	1 cut(s)	2069
SapI	GCTCTTC	1 cut(s)	2168
Sau96I	GGNCC	1 cut(s)	1543
SchI	GAGTC	2 cut(s)	1073, 2047
ScrFI	CCNGG	4 cut(s)	337, 695, 1795, 2058
SduI	GDGCHC	5 cut(s)	18, 766, 1867, 2069, 2241
SfaNI	GCATC	6 cut(s)	1222, 1302, 1492, 1713, 1837, 2128
SfcI	CTRYAG	3 cut(s)	22, 1188, 1601
SfuI	TTCGAA	1 cut(s)	522
SinI	GGWCC	1 cut(s)	1543
SmiMI	CAYNNNNRTG	4 cut(s)	804, 1284, 1584, 1893
SmlI	CTYRAG	3 cut(s)	781, 1114, 2197
SmoI	CTYRAG	3 cut(s)	781, 1114, 2197
SpeI	ACTAGT	1 cut(s)	1042
SspMI	CTAG	5 cut(s)	1043, 1496, 1530, 1622, 1749
SstI	GAGCTC	1 cut(s)	2069
StyD4I	CCNGG	4 cut(s)	335, 693, 1793, 2056
StyI	CCWWGG	7 cut(s)	274, 317, 345, 1227, 1342, 1529, 1547
TaaI	ACNGT	6 cut(s)	500, 739, 1207, 1433, 2258, 2414
TaiI	ACGT	5 cut(s)	588, 1204, 1383, 1953, 2091
TaqI	TCGA	7 cut(s)	61, 150, 311, 502, 522, 619, 2220
TaqII	GACCGA	1 cut(s)	1531
TatI	WGTACW	2 cut(s)	1408, 2291
TauI	GCSGC	3 cut(s)	300, 545, 2343
TfiI	GAWTC	9 cut(s)	308, 472, 796, 1107, 1193, 1740, 1940, 2283, 2405
TscAI	CASTG	4 cut(s)	503, 988, 2110, 2263
TseFI	GTSAC	3 cut(s)	1076, 1277, 1648
TseI	GCWGC	9 cut(s)	103, 106, 245, 366, 674, 953, 1603, 1670, 1767
Tsp45I	GTSAC	3 cut(s)	1076, 1277, 1648
TspGWI	ACGGA	3 cut(s)	368, 1752, 2396
TspRI	CASTG	4 cut(s)	503, 988, 2110, 2263
Van91I	CCANNNNNTGG	2 cut(s)	116, 1343
VpaK11BI	GGWCC	1 cut(s)	1543
XapI	RAATTY	6 cut(s)	44, 340, 872, 1020, 1987, 2363
XceI	RCATGY	4 cut(s)	38, 865, 893, 1477
XmaJI	CCTAGG	1 cut(s)	1529
XmiI	GTMKAC	1 cut(s)	1437
XmnI	GAANNNNTTC	2 cut(s)	1218, 1332
XspI	CTAG	5 cut(s)	1043, 1496, 1530, 1622, 1749
Zsp2I	ATGCAT	1 cut(s)	1507

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.