FvH4_2g06180

PLAC8 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0009650
Physical Location & Seq
Reverse (-)
5129806 .. 5131823
2018 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g06180.t1

Sequence Viewer

Length: 567 bp
ATGTATCCCACAGCTCCTGACCATGAGAAATATGCAGGTCATGATCATGATCACCATGTTCCAGGTCATGAGGTTCCAGCTTTGAGTCCTCATGGTGTAGCAAGAGTCTATGCTCCTCCATATGTAGTCAGTACGGGGCACTCTGCTCGTCACGTAGGAGGGGAGTGGTCAACTGGTCTTTGCCATTGTTGTGATGATCCTCCAAATTGTATGATCACTTGCTTTTGCCCTTGCATCACCTTCGGCCAGATAGCTGAGATAGTGGATCAAGGTTCCTCATCTTGTGCTCAACAAGGAACGTGTTATGGGATTCTTCTTGCAACTACTGTTCTTGCTTGCTTATACTCGTGTTTCTATCGGTCGAAGTTGAGAGGTCAGTACGACTTGGAAGAATCACCTTGTGTGGATTGCCTAGTTCATTTTTGCTGTCCTGGTTGTGCACTTTGTCAAGAATACAGAGAGCTCAAGAGTCGTGGTTTTGATATGGGAATAGGTTGGGAAGCCAACTTGGACAGACAAAGGCGAGGAGTTACTCAAGCTCCGGTGGCACCAGGAATGATAAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0008285 GO:0042127 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0065007
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PLAC8

Protein Analysis

189

Amino Acids

20.58

Weight (kDa)

5.95

Isoelectric Point (pI)

51.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLAC8 PF04749 56 - 154 9.9e-33 PLAC8 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 26
AccB1I GGYRCC 1 cut(s) 547
AclWI GGATC 2 cut(s) 191, 273
AcoI YGGCCR 1 cut(s) 244
AdeI CACNNNGTG 1 cut(s) 401
AfaI GTAC 2 cut(s) 133, 380
AflIII ACRYGT 1 cut(s) 299
AjnI CCWGG 3 cut(s) 61, 430, 550
AluBI AGCT 5 cut(s) 14, 80, 254, 463, 539
AluI AGCT 5 cut(s) 14, 80, 254, 463, 539
Alw21I GWGCWC 3 cut(s) 289, 442, 465
Alw44I GTGCAC 1 cut(s) 438
AlwI GGATC 2 cut(s) 191, 273
AlwNI CAGNNNCTG 1 cut(s) 17
AoxI GGCC 1 cut(s) 244
ApaLI GTGCAC 1 cut(s) 438
AsuHPI GGTGA 3 cut(s) 44, 229, 387
BaeGI GKGCMC 2 cut(s) 141, 442
BanI GGYRCC 1 cut(s) 547
BanII GRGCYC 1 cut(s) 465
BauI CACGAG 1 cut(s) 346
Bbv12I GWGCWC 3 cut(s) 289, 442, 465
BcgI CGANNNNNNTGC 4 cut(s) 128, 162, 223, 257
BciT130I CCWGG 3 cut(s) 63, 432, 552
BciVI GTATCC 1 cut(s) 15
BclI TGATCA 3 cut(s) 43, 49, 213
BfaI CTAG 1 cut(s) 413
BfuAI ACCTGC 1 cut(s) 26
BfuI GTATCC 1 cut(s) 15
Bme1390I CCNGG 3 cut(s) 63, 432, 552
BmiI GGNNCC 3 cut(s) 75, 274, 549
BmrFI CCNGG 3 cut(s) 63, 432, 552
BmsI GCATC 1 cut(s) 243
BpuEI CTTGAG 2 cut(s) 449, 519
BsaAI YACGTR 1 cut(s) 154
BsaBI GATNNNNATC 1 cut(s) 48
BsaWI WCCGGW 1 cut(s) 541
BsaXI ACNNNNNCTCC 2 cut(s) 523, 553
Bse1I ACTGG 1 cut(s) 178
Bse8I GATNNNNATC 1 cut(s) 48
BseBI CCWGG 3 cut(s) 63, 432, 552
BseJI GATNNNNATC 1 cut(s) 48
BseMII CTCAG 1 cut(s) 246
BseNI ACTGG 1 cut(s) 178
BseRI GAGGAG 2 cut(s) 105, 540
BseSI GKGCMC 2 cut(s) 141, 442
Bsh1285I CGRYCG 1 cut(s) 362
BshFI GGCC 1 cut(s) 246
BshNI GGYRCC 1 cut(s) 547
BsiEI CGRYCG 1 cut(s) 362
BsiHKAI GWGCWC 3 cut(s) 289, 442, 465
BsiSI CCGG 1 cut(s) 542
BsnI GGCC 1 cut(s) 246
Bsp1286I GDGCHC 4 cut(s) 141, 289, 442, 465
Bsp143I GATC 5 cut(s) 43, 49, 196, 213, 265
BspANI GGCC 1 cut(s) 246
BspCNI CTCAG 1 cut(s) 247
BspHI TCATGA 3 cut(s) 40, 46, 67
BspLI GGNNCC 3 cut(s) 75, 274, 549
BspMI ACCTGC 1 cut(s) 26
BspPI GGATC 2 cut(s) 191, 273
BspT107I GGYRCC 1 cut(s) 547
BsrI ACTGG 1 cut(s) 178
BssMI GATC 5 cut(s) 43, 49, 196, 213, 265
BssSI CACGAG 1 cut(s) 346
Bst2BI CACGAG 1 cut(s) 346
Bst2UI CCWGG 3 cut(s) 63, 432, 552
Bst4CI ACNGT 1 cut(s) 328
BstBAI YACGTR 1 cut(s) 154
BstC8I GCNNGC 1 cut(s) 337
BstDEI CTNAG 1 cut(s) 255
BstKTI GATC 5 cut(s) 46, 52, 199, 216, 268
BstMBI GATC 5 cut(s) 43, 49, 196, 213, 265
BstMCI CGRYCG 1 cut(s) 362
BstMWI GCNNNNNNNGC 1 cut(s) 545
BstNI CCWGG 3 cut(s) 63, 432, 552
BstSCI CCNGG 3 cut(s) 61, 430, 550
BstSLI GKGCMC 2 cut(s) 141, 442
BsuI GTATCC 1 cut(s) 15
BsuRI GGCC 1 cut(s) 246
BveI ACCTGC 1 cut(s) 26
Cac8I GCNNGC 1 cut(s) 337
CaiI CAGNNNCTG 1 cut(s) 17
CciI TCATGA 3 cut(s) 40, 46, 67
Csp6I GTAC 2 cut(s) 132, 379
CspCI CAANNNNNGTGG 2 cut(s) 454, 489
CviAII CATG 6 cut(s) 23, 41, 47, 56, 68, 92
CviJI RGCY 7 cut(s) 14, 80, 246, 254, 463, 503, 539
CviKI_1 RGCY 7 cut(s) 14, 80, 246, 254, 463, 503, 539
CviQI GTAC 2 cut(s) 132, 379
DdeI CTNAG 1 cut(s) 255
DpnI GATC 5 cut(s) 45, 51, 198, 215, 267
DpnII GATC 5 cut(s) 43, 49, 196, 213, 265
DraIII CACNNNGTG 1 cut(s) 401
EaeI YGGCCR 1 cut(s) 244
Ecl136II GAGCTC 1 cut(s) 463
Eco24I GRGCYC 1 cut(s) 465
Eco53kI GAGCTC 1 cut(s) 463
EcoICRI GAGCTC 1 cut(s) 463
EcoRII CCWGG 3 cut(s) 61, 430, 550
EcoT38I GRGCYC 1 cut(s) 465
FaeI CATG 6 cut(s) 26, 44, 50, 59, 71, 95
FatI CATG 6 cut(s) 22, 40, 46, 55, 67, 91
FauNDI CATATG 1 cut(s) 121
FbaI TGATCA 3 cut(s) 43, 49, 213
FriOI GRGCYC 1 cut(s) 465
FspBI CTAG 1 cut(s) 413
HaeIII GGCC 1 cut(s) 246
HapII CCGG 1 cut(s) 542
Hin1II CATG 6 cut(s) 26, 44, 50, 59, 71, 95
HincII GTYRAC 1 cut(s) 171
HindII GTYRAC 1 cut(s) 171
HinfI GANTC 5 cut(s) 85, 105, 310, 392, 469
HpaII CCGG 1 cut(s) 542
HphI GGTGA 3 cut(s) 44, 229, 387
Hpy166II GTNNAC 2 cut(s) 171, 440
Hpy188III TCNNGA 6 cut(s) 17, 41, 47, 68, 449, 466
Hpy8I GTNNAC 2 cut(s) 171, 440
HpyAV CCTTC 1 cut(s) 250
HpyCH4III ACNGT 1 cut(s) 328
HpyCH4IV ACGT 2 cut(s) 153, 299
HpyCH4V TGCA 4 cut(s) 35, 234, 320, 440
HpyF10VI GCNNNNNNNGC 1 cut(s) 545
HpyF3I CTNAG 1 cut(s) 255
HpySE526I ACGT 2 cut(s) 153, 299
Hsp92II CATG 6 cut(s) 26, 44, 50, 59, 71, 95
Ksp22I TGATCA 3 cut(s) 43, 49, 213
Kzo9I GATC 5 cut(s) 43, 49, 196, 213, 265
LmnI GCTCC 3 cut(s) 19, 118, 544
LweI GCATC 1 cut(s) 243
MaeI CTAG 1 cut(s) 413
MaeII ACGT 2 cut(s) 153, 299
MaeIII GTNAC 2 cut(s) 149, 529
MalI GATC 5 cut(s) 45, 51, 198, 215, 267
MboI GATC 5 cut(s) 43, 49, 196, 213, 265
MboII GAAGA 2 cut(s) 305, 401
MhlI GDGCHC 4 cut(s) 141, 289, 442, 465
MluCI AATT 1 cut(s) 205
MlyI GAGTC 3 cut(s) 94, 114, 478
MnlI CCTC 8 cut(s) 64, 99, 126, 152, 210, 286, 365, 518
MslI CAYNNNNRTG 2 cut(s) 45, 189
MspI CCGG 1 cut(s) 542
MspR9I CCNGG 3 cut(s) 63, 432, 552
MvaI CCWGG 3 cut(s) 63, 432, 552
MwoI GCNNNNNNNGC 1 cut(s) 545
NdeI CATATG 1 cut(s) 121
NdeII GATC 5 cut(s) 43, 49, 196, 213, 265
NlaIII CATG 6 cut(s) 26, 44, 50, 59, 71, 95
NlaIV GGNNCC 3 cut(s) 75, 274, 549
NmuCI GTSAC 1 cut(s) 149
PagI TCATGA 3 cut(s) 40, 46, 67
PfeI GAWTC 2 cut(s) 310, 392
PleI GAGTC 3 cut(s) 93, 113, 477
PpsI GAGTC 3 cut(s) 93, 113, 477
Ppu21I YACGTR 1 cut(s) 154
Psp124BI GAGCTC 1 cut(s) 465
Psp6I CCWGG 3 cut(s) 61, 430, 550
PspGI CCWGG 3 cut(s) 61, 430, 550
PspN4I GGNNCC 3 cut(s) 75, 274, 549
PstNI CAGNNNCTG 1 cut(s) 17
RsaI GTAC 2 cut(s) 133, 380
RsaNI GTAC 2 cut(s) 132, 379
RseI CAYNNNNRTG 2 cut(s) 45, 189
SacI GAGCTC 1 cut(s) 465
Sau3AI GATC 5 cut(s) 43, 49, 196, 213, 265
SchI GAGTC 3 cut(s) 94, 114, 478
ScrFI CCNGG 3 cut(s) 63, 432, 552
SduI GDGCHC 4 cut(s) 141, 289, 442, 465
SfaNI GCATC 1 cut(s) 243
SmiMI CAYNNNNRTG 2 cut(s) 45, 189
SmlI CTYRAG 2 cut(s) 464, 534
SmoI CTYRAG 2 cut(s) 464, 534
Sse9I AATT 1 cut(s) 205
SspMI CTAG 1 cut(s) 413
SstI GAGCTC 1 cut(s) 465
StyD4I CCNGG 3 cut(s) 61, 430, 550
TaaI ACNGT 1 cut(s) 328
TaiI ACGT 2 cut(s) 156, 302
TaqI TCGA 1 cut(s) 362
TaqII GACCGA 1 cut(s) 348
TasI AATT 1 cut(s) 205
TfiI GAWTC 2 cut(s) 310, 392
TseFI GTSAC 1 cut(s) 149
Tsp45I GTSAC 1 cut(s) 149
TspDTI ATGAA 1 cut(s) 407
VneI GTGCAC 1 cut(s) 438
XspI CTAG 1 cut(s) 413
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.