Rroxscaffold_5G00383990

Protein PLANT CADMIUM RESISTANCE 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0009650
Physical Location & Seq
Reverse (-)
63530886 .. 63536223
5338 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00383990.1

Sequence Viewer

Length: 381 bp
ATGAAGAAAACTTTGCAAATGAACAAGAAAAGTATATGGCTAGGTGACATTGCATTACATATTGCTCTAGTTTTCTTGCATTTACTGCGACTTGTGGGGCAAGTGGAGCACTTGTACACCTTGATAGCTTTTGTGACTGGTTGTTCTTGCATCTATTCATGCTTCAACTCTCCAAAACCGAGGCAGCAATACACTTTGGAAGAGAGCCCTTGTGGTGATTGTTTGGTTCAATGTTTCTGCGAACCCCGCGCCTTGTGCCGGGAGCACCGTGAGCTCCAAAGTCGCGGTTTTAATATGGCCATCGGATGGGATGGAAATATGGATGCAAGGAACCACGAGGTGGCAATGGCCCCGGTGCCCCGATGGTGGAGGAAGGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PLAC8

Protein Analysis

126

Amino Acids

14.54

Weight (kDa)

8.69

Isoelectric Point (pI)

52.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLAC8 PF04749 35 - 91 6.7e-13 PLAC8 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 355
AccB7I CCANNNNNTGG 2 cut(s) 306, 340
AccII CGCG 2 cut(s) 249, 285
AciI CCGC 2 cut(s) 247, 285
AcoI YGGCCR 1 cut(s) 297
AdeI CACNNNGTG 1 cut(s) 340
AfaI GTAC 1 cut(s) 116
AfiI CCNNNNNNNGG 4 cut(s) 258, 306, 340, 366
AgsI TTSAA 2 cut(s) 166, 230
AluBI AGCT 2 cut(s) 128, 274
AluI AGCT 2 cut(s) 128, 274
Alw21I GWGCWC 3 cut(s) 111, 267, 276
AoxI GGCC 2 cut(s) 297, 348
ApeKI GCWGC 1 cut(s) 184
AspLEI GCGC 1 cut(s) 251
AspS9I GGNCC 1 cut(s) 349
AsuC2I CCSGG 2 cut(s) 260, 353
AsuHPI GGTGA 2 cut(s) 56, 227
BaeGI GKGCMC 1 cut(s) 360
BalI TGGCCA 1 cut(s) 299
BanI GGYRCC 1 cut(s) 355
BanII GRGCYC 2 cut(s) 209, 276
BauI CACGAG 1 cut(s) 335
Bbv12I GWGCWC 3 cut(s) 111, 267, 276
BbvI GCAGC 1 cut(s) 196
BccI CCATC 4 cut(s) 300, 305, 308, 357
BcnI CCSGG 2 cut(s) 260, 353
BfaI CTAG 2 cut(s) 41, 68
BisI GCNGC 1 cut(s) 185
BlsI GCNGC 1 cut(s) 186
Bme1390I CCNGG 2 cut(s) 260, 353
BmgT120I GGNCC 1 cut(s) 349
BmiI GGNNCC 3 cut(s) 332, 351, 357
BmrFI CCNGG 2 cut(s) 260, 353
BmsI GCATC 2 cut(s) 159, 313
BpuMI CCSGG 2 cut(s) 260, 353
BsaJI CCNNGG 2 cut(s) 179, 351
BsaXI ACNNNNNCTCC 2 cut(s) 98, 128
Bsc4I CCNNNNNNNGG 4 cut(s) 258, 306, 340, 366
Bse1I ACTGG 1 cut(s) 142
Bse3DI GCAATG 2 cut(s) 48, 351
BseDI CCNNGG 2 cut(s) 179, 351
BseGI GGATG 3 cut(s) 311, 316, 328
BseLI CCNNNNNNNGG 4 cut(s) 258, 306, 340, 366
BseMI GCAATG 2 cut(s) 48, 351
BseNI ACTGG 1 cut(s) 142
BseSI GKGCMC 1 cut(s) 360
BseXI GCAGC 1 cut(s) 196
Bsh1236I CGCG 2 cut(s) 249, 285
BshFI GGCC 2 cut(s) 299, 350
BshNI GGYRCC 1 cut(s) 355
BsiHKAI GWGCWC 3 cut(s) 111, 267, 276
BsiSI CCGG 2 cut(s) 259, 353
BslI CCNNNNNNNGG 4 cut(s) 258, 306, 340, 366
BsnI GGCC 2 cut(s) 299, 350
Bsp1286I GDGCHC 5 cut(s) 111, 209, 267, 276, 360
Bsp1407I TGTACA 1 cut(s) 114
BspACI CCGC 2 cut(s) 247, 285
BspANI GGCC 2 cut(s) 299, 350
BspFNI CGCG 2 cut(s) 249, 285
BspLI GGNNCC 3 cut(s) 332, 351, 357
BspT107I GGYRCC 1 cut(s) 355
BsrDI GCAATG 2 cut(s) 48, 351
BsrGI TGTACA 1 cut(s) 114
BsrI ACTGG 1 cut(s) 142
BssECI CCNNGG 2 cut(s) 179, 351
BssSI CACGAG 1 cut(s) 335
Bst2BI CACGAG 1 cut(s) 335
Bst4CI ACNGT 1 cut(s) 269
Bst6I CTCTTC 1 cut(s) 195
BstAPI GCANNNNNTGC 1 cut(s) 85
BstAUI TGTACA 1 cut(s) 114
BstF5I GGATG 3 cut(s) 311, 316, 328
BstFNI CGCG 2 cut(s) 249, 285
BstHHI GCGC 1 cut(s) 251
BstMWI GCNNNNNNNGC 5 cut(s) 85, 106, 246, 255, 271
BstSCI CCNGG 2 cut(s) 258, 351
BstSLI GKGCMC 1 cut(s) 360
BstUI CGCG 2 cut(s) 249, 285
BstV1I GCAGC 1 cut(s) 196
BsuRI GGCC 2 cut(s) 299, 350
BtsCI GGATG 3 cut(s) 311, 316, 328
CfoI GCGC 1 cut(s) 251
Cfr13I GGNCC 1 cut(s) 349
Csp6I GTAC 1 cut(s) 115
CviAII CATG 2 cut(s) 159, 378
CviJI RGCY 6 cut(s) 40, 128, 207, 274, 299, 350
CviKI_1 RGCY 6 cut(s) 40, 128, 207, 274, 299, 350
CviQI GTAC 1 cut(s) 115
DraIII CACNNNGTG 1 cut(s) 340
EaeI YGGCCR 1 cut(s) 297
Eam1104I CTCTTC 1 cut(s) 195
EarI CTCTTC 1 cut(s) 195
Ecl136II GAGCTC 1 cut(s) 274
Eco24I GRGCYC 2 cut(s) 209, 276
Eco53kI GAGCTC 1 cut(s) 274
EcoICRI GAGCTC 1 cut(s) 274
EcoT38I GRGCYC 2 cut(s) 209, 276
FaeI CATG 2 cut(s) 162, 381
FaiI YATR 7 cut(s) 35, 37, 60, 160, 296, 320, 379
FatI CATG 2 cut(s) 158, 377
FauI CCCGC 1 cut(s) 254
Fnu4HI GCNGC 1 cut(s) 185
FokI GGATG 3 cut(s) 318, 323, 335
FriOI GRGCYC 2 cut(s) 209, 276
Fsp4HI GCNGC 1 cut(s) 185
FspBI CTAG 2 cut(s) 41, 68
GlaI GCGC 1 cut(s) 250
GluI GCNGC 1 cut(s) 185
HaeIII GGCC 2 cut(s) 299, 350
HapII CCGG 2 cut(s) 259, 353
HhaI GCGC 1 cut(s) 251
Hin1II CATG 2 cut(s) 162, 381
Hin6I GCGC 1 cut(s) 249
HinP1I GCGC 1 cut(s) 249
HpaII CCGG 2 cut(s) 259, 353
HphI GGTGA 2 cut(s) 56, 227
Hpy166II GTNNAC 1 cut(s) 117
Hpy188I TCNGA 1 cut(s) 305
Hpy8I GTNNAC 1 cut(s) 117
HpyAV CCTTC 1 cut(s) 367
HpyCH4III ACNGT 1 cut(s) 269
HpyCH4V TGCA 5 cut(s) 16, 53, 79, 150, 326
HpyF10VI GCNNNNNNNGC 5 cut(s) 85, 106, 246, 255, 271
Hsp92II CATG 2 cut(s) 162, 381
HspAI GCGC 1 cut(s) 249
LmnI GCTCC 3 cut(s) 106, 262, 279
LpnPI CCDG 3 cut(s) 123, 272, 366
Lsp1109I GCAGC 1 cut(s) 196
LweI GCATC 2 cut(s) 159, 313
MaeI CTAG 2 cut(s) 41, 68
MaeIII GTNAC 2 cut(s) 44, 133
MboII GAAGA 2 cut(s) 16, 212
MhlI GDGCHC 5 cut(s) 111, 209, 267, 276, 360
MlsI TGGCCA 1 cut(s) 299
MluNI TGGCCA 1 cut(s) 299
MnlI CCTC 3 cut(s) 174, 331, 363
Mox20I TGGCCA 1 cut(s) 299
MscI TGGCCA 1 cut(s) 299
MseI TTAA 1 cut(s) 291
Msp20I TGGCCA 1 cut(s) 299
MspI CCGG 2 cut(s) 259, 353
MspR9I CCNGG 2 cut(s) 260, 353
MvnI CGCG 2 cut(s) 249, 285
MwoI GCNNNNNNNGC 5 cut(s) 85, 106, 246, 255, 271
NciI CCSGG 2 cut(s) 260, 353
NlaIII CATG 2 cut(s) 162, 381
NlaIV GGNNCC 3 cut(s) 332, 351, 357
NmuCI GTSAC 2 cut(s) 44, 133
PflMI CCANNNNNTGG 2 cut(s) 306, 340
PkrI GCNGC 1 cut(s) 186
Psp124BI GAGCTC 1 cut(s) 276
PspN4I GGNNCC 3 cut(s) 332, 351, 357
PspPI GGNCC 1 cut(s) 349
RsaI GTAC 1 cut(s) 116
RsaNI GTAC 1 cut(s) 115
SacI GAGCTC 1 cut(s) 276
SaqAI TTAA 1 cut(s) 291
SatI GCNGC 1 cut(s) 185
Sau96I GGNCC 1 cut(s) 349
ScrFI CCNGG 2 cut(s) 260, 353
SduI GDGCHC 5 cut(s) 111, 209, 267, 276, 360
SetI ASST 5 cut(s) 46, 122, 130, 276, 342
SfaNI GCATC 2 cut(s) 159, 313
SsiI CCGC 2 cut(s) 247, 285
SspMI CTAG 2 cut(s) 41, 68
SstI GAGCTC 1 cut(s) 276
StyD4I CCNGG 2 cut(s) 258, 351
TaaI ACNGT 1 cut(s) 269
TatI WGTACW 1 cut(s) 114
Tru1I TTAA 1 cut(s) 291
Tru9I TTAA 1 cut(s) 291
TseFI GTSAC 2 cut(s) 44, 133
TseI GCWGC 1 cut(s) 184
Tsp45I GTSAC 2 cut(s) 44, 133
TspDTI ATGAA 3 cut(s) 17, 35, 147
Van91I CCANNNNNTGG 2 cut(s) 306, 340
XspI CTAG 2 cut(s) 41, 68
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.