Rorug05G0575700

PLAC8 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0009650
Physical Location & Seq
Reverse (-)
77168964 .. 77175242
6279 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0575700.1

Sequence Viewer

Length: 3615 bp
ATGGAGCTCTATCCCGTCGAGATGGCGTTGGCGGTAGCTGTGGGATTTGCGACAATGACACATTGGTTGGCTTCCATGGTTGAAAACCGTGAGTCAGTGTCTAATGATAATCGAGAATTGGCCGACGTGGATCCCCCTGCATCTCTTCTTTCATCAGCTGAATCATCGTCAGCTTCCATGGTTGAAAACCCTGAGCCAATACCGGAGGAAAATCAAGAATTGATCCCCTCTGCATCTCTTCTTTCATCAGCTGAATCATCGTCAGCTTCCATGTTTGAAAACCCTGAGCCAATGCCGGAGGAAAATCAAGAATTGTTCCCCTCTCCATCTCTTGTATCATCAGCAGCTCCTTGGCAGAAGTATGATGTTTTTCTGAGTTTCAGGGGTGCAGAGACTCGTACGGGTTTTGTATCCCACTTATACCATGAATTGCAGACTGTGAGAGGGATTCAAACGTTCATGGATGACAAAGAGCTTGAACTAGGGGCTCCTATTTATCCAAGTCTGCTAAAGGCAATTGAAGAATCAAATTTTGCAATTGTTGTTTTGTCGAAAGACTATGCTCAATCTGCATGGTGTTTGGAGGAACTTACAAAGATTTGTCAATGCATGAAAAACAATAACAGAATCCTACCCCTGTTTTATCATGTCGAACCTACGGATGTGCGGCATCAAAAGGGGACTTTTAGAGATGCTTTCACAAATCATGTAAAACATGGGTGGCACAGTTCAGAGAAGATGCAGCAGTGGAGAAAAGCTTTAAAAACAGTAGCCAGTTTCTCTGGGCGTAATGCAAAGGATCATCAGAATGAAAGAGATCTTGTCGAAGCCATTGTGGAATCTGTGTGCAGGAGAGTAAAACCTATTGAAATTGAGTTTATTATTTCCTCAAGAGATTTTGGAGATTTTGAAGTATTTGAAGCAACCAGAGAAGCCATGGACAATGTAATGGAGGCGCTAAAAGATGAAAACGTCACTATCATTGGGGTCTACGGAATGCCAGGCATTGGAAAAACAACCATGGTGGAACATGTTGGTGTAGAAGCCCAAAAAAAGGGGATTTTCCGTCAGGTGATTATGGCTGGCATATCCCAAAAGCCTAACTTGTGGAATATTCAAGACACATTAGCAGACATGTTGGGTGTGAAGCTGGTGGATGCGACCATAACTGGAAGAGCCAAAACACTGAGGAAGAAGATAAGGAGTGGAAATAGGATCCTTATAATTTTGGACAACATTTGGAATGAAATACAGTTGACAGACATAGGAATTCCCAGATCCAACGAGCTTAAAAGATGCAATTCCAAGGTCCTACTCACAACAAGGAAAGGGGATGTTTGCTATCGTATGCAATGCCAAGCAAGCATTCGTCTCAATACCTTAACTGAACAAGATTCTTGGAAGTTGTTTGAGAAGGAAGCAAGAAATTCTTTTGAAACGTCGACTTTCCATAACAAAGCAAGGCAGGTAGCAGGAGAATGTGGTGGTCTTCCAGTTGCATTGAAAGCAGTTGCAAAGGCACTTGGGGATAAAAAGTTGGACGAATGGAACAAAGCTGCTGAGCGACTAAAGGTGTCTCAACTTCCCCACCCTGAAGACGAGAAAGTTGTGTTCGAATGCATTAAGTTAAGCTATGATTACTTGAAATCTGATGTTTCAAAATCATGCCTTTTGCTTTGCTGCCTATTCCCAGAGGATGATGATATCAAAATTGAAGACTTGCTGAAGTATGGGATTGGGAAAGGATTGTTTGAAGAGTCCAACATGCAAAATGCCAGAGACACAATACAGACCGTTGTCGAGTCTCTTAAAGATTCAGGCTTGCTTTTGGATGCTAAAAAAGAAGGGGGATATGTAAGGATGCATGATGTCGTCAGAGATGTTGCCATACAAATTTCCTTACAATTTTTTGTAAGAGCTGGTTGTGAATTGCAGTATTGGCCAAGGATTGATGCAGGTAAAGGCTACATTGCAATCTCACTAATGAAGAACAAAATATGCACGCTTCCTGCTGAACACTTGGTATTTCCAGAACTTCATATTCTCTTGTTACAAAGTAATTCTATGAATAAGATCCCAGTTTCTTCATTTGAACGTCTAGAGGCATTAAGGGTCTTAGATATTAGCGAGACTAGCATTTCTTTACTACCCTCATCATCCAATCTCCTAACCAGCCTCCACACTTTGTATCTAGATTGTTGCTGCTTATCAAGGATAAGTAACATATCCATACTTGGACAGTTGAAAGAACTTAAGATTCTTAGTATGAGAGAATTTCCTCGTGAGAAACTGCCAAAAGAAATAGGAGAGTTGACCAAACTAAGGATGCTGGACTTCACTAGTGAATCTGTTGGAATAGTTCCTTGTAACGTGATAGGCAACCTCAGTAAATTAGAAGAACTCTACATGCAGTGCAACTTTGTGGACTGGGGGAGTAGTGTTGAGGGAAGTAAAGTCGAGGGGAGTGAAGTCAAGGGAAATACAGTTGAGGAGAGCGAAGCTGAGGGAGTAAGAGAGGAAACTAATGCTTCCTTTGATGAGTTAACTAGCTTGTTACATCTACACATTTTGAAGGTTTTCATATCTGATCCAAAATGCTTACCTACAGATGTTGAGGTTAAGTCTAATTGGAAAAGTTTTGACATATGTATCTGTAGAGACCGGTCAATTAGAGAATTGCTTTTGGATCCAAGATCTCCACTTAGAGAATTGCTTTTGAATTCAAGTTCTCCACTTGATTCAAAAGCCTTGACTCTTGACACAACCATGGATACCTTACCGCAATGGTTTACTGATGTGGTGAACAAGAAAACGGAGAAGCTACAGTACATAAACTGTCAGGGTTTAGTTAATGTTCTTAATGAATATTACCAAGGGACATTACATGCACTTAAGTATTTACATGTTATTGGTCCCAGTGATAAATTGGAACAGTTGATGACCCCAATAACATCGGTTCCAAATGAACCTGTGTTTGAGAATTTGGAAGAGTTGCATCTCGTTGAAGTGAATTGTCTGAAGGAGTTATGTGTTGGTGAATTACCAAATGAGTCTCTATGCAAGCTTAGGTTACTGAAGGTGAGAGGTTGTCATGAATTGATGAATGCACTTTTACAATCTAATTTGCTGAAGAGACTAAAAAATTTGGAAAAACTAAGTTGTGAAGAGATGGATAAATTGGAGTATGTGTTTTCATCTGAAGGGTCTGAGTTTAATTTTGAGTGCAATAAGCTGAAAAATCTTTTCACATCCAACATAGCTCACCATCTTCATGACTTGGAAGATCTTAGGGTAGAGGTTTGCCAAAGGTTGGAGAGGGTTATTGAAGCAAGTGAGGAAACAGTCAACAACAAGATAGTTTTACCAAAATTGAAGAAGTTAGCTTTGAAACAGCTTCTTAAGCTTACAAGGTTCTATGGTAGTACTGGAAGTGCTACTAGTGATGAAGAATATATTGAGTTTCCTTTATTGGAACACTCGCATGTGGAACGCTGTCATATTTTCAATTCTCCAGCTAAGGACATGTTGGTTTCAATGATGAATAAGCAGCCTGTTTTGATTCCTATGCAAGAGACAGGTCCGAGAGACACACCAACTTTAAGCAGAAGAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0008285 GO:0042127 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0065007
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PLAC8

Protein Analysis

1204

Amino Acids

136.19

Weight (kDa)

5.48

Isoelectric Point (pI)

43.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 120 - 288 3.4e-48 TIR domain
TIR_2 PF13676 123 - 219 4.5e-15 TIR domain
NB-ARC PF00931 311 - 474 6e-29 NB-ARC domain
LRR_8 PF13855 677 - 732 7.6e-07 Leucine rich repeat
LRR_14 PF23598 730 - 1001 1.3e-09 Leucine-rich repeat region
LRR_RPS2 PF23247 994 - 1069 2.8e-11 Plant disease resistance protein RPS2-like, leucine-rich repeats
LRR_RPS2 PF23247 1074 - 1168 3.9e-10 Plant disease resistance protein RPS2-like, leucine-rich repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1223
Acc36I ACCTGC 2 cut(s) 1456, 1946
AccB7I CCANNNNNTGG 2 cut(s) 1007, 3310
AccI GTMKAC 2 cut(s) 990, 1442
AciI CCGC 3 cut(s) 32, 667, 2780
AclI AACGTT 1 cut(s) 455
AcoI YGGCCR 2 cut(s) 120, 1940
AcsI RAATTY 8 cut(s) 529, 1269, 1426, 1893, 2273, 2719, 2980, 3142
AcuI CTGAAG 6 cut(s) 1614, 1745, 3038, 3095, 3149, 3219
AfaI GTAC 3 cut(s) 400, 2828, 3424
AfiI CCNNNNNNNGG 4 cut(s) 1007, 1054, 2322, 3310
AflII CTTAAG 3 cut(s) 2252, 2891, 3398
AflIII ACRYGT 4 cut(s) 1030, 1134, 2902, 3522
AgeI ACCGGT 1 cut(s) 2661
AhlI ACTAGT 2 cut(s) 2339, 3437
AjiI CACGTC 1 cut(s) 127
AjnI CCWGG 1 cut(s) 1000
AjuI GAANNNNNNNTTGG 2 cut(s) 1350, 1382
Alw21I GWGCWC 1 cut(s) 9
AoxI GGCC 2 cut(s) 120, 1940
ApeKI GCWGC 6 cut(s) 344, 742, 1556, 1680, 2202, 3547
ApoI RAATTY 8 cut(s) 529, 1269, 1426, 1893, 2273, 2719, 2980, 3142
AsiGI ACCGGT 1 cut(s) 2661
Asp700I GAANNNNTTC 1 cut(s) 2576
AspLEI GCGC 1 cut(s) 958
AspS9I GGNCC 3 cut(s) 1309, 2912, 3578
AsuHPI GGTGA 5 cut(s) 1084, 2812, 3047, 3091, 3254
AsuII TTCGAA 1 cut(s) 1614
AvaII GGWCC 3 cut(s) 1309, 2912, 3578
BaeI ACNNNNGTAYC 2 cut(s) 2632, 2665
BalI TGGCCA 1 cut(s) 1942
BamHI GGATCC 3 cut(s) 130, 1215, 2686
BanII GRGCYC 2 cut(s) 9, 490
BarI GAAGNNNNNNTAC 2 cut(s) 2810, 2842
BauI CACGAG 1 cut(s) 2280
BbsI GAAGAC 3 cut(s) 1481, 1602, 1722
Bbv12I GWGCWC 1 cut(s) 9
BbvCI CCTCAGC 1 cut(s) 2502
BbvI GCAGC 6 cut(s) 356, 754, 1543, 1667, 2189, 3559
BccI CCATC 4 cut(s) 16, 334, 3163, 3273
BciT130I CCWGG 1 cut(s) 1002
BciVI GTATCC 2 cut(s) 421, 2764
BcuI ACTAGT 2 cut(s) 2339, 3437
BfaI CTAG 7 cut(s) 482, 2099, 2133, 2192, 2340, 2547, 3438
BfmI CTRYAG 3 cut(s) 2604, 2653, 2822
BfoI RGCGCY 1 cut(s) 959
BfrI CTTAAG 3 cut(s) 2252, 2891, 3398
BfuAI ACCTGC 2 cut(s) 1456, 1946
BfuI GTATCC 2 cut(s) 421, 2764
BglII AGATCT 3 cut(s) 817, 2693, 3283
BisI GCNGC 7 cut(s) 345, 668, 743, 1557, 1681, 2203, 3548
BlpI GCTNAGC 1 cut(s) 1560
BlsI GCNGC 7 cut(s) 346, 669, 744, 1558, 1682, 2204, 3549
BmcAI AGTACT 1 cut(s) 3424
Bme1390I CCNGG 1 cut(s) 1002
Bme18I GGWCC 3 cut(s) 1309, 2912, 3578
BmgBI CACGTC 1 cut(s) 127
BmgT120I GGNCC 3 cut(s) 1309, 2912, 3578
BmiI GGNNCC 6 cut(s) 132, 489, 1217, 2688, 2914, 2958
BmrFI CCNGG 1 cut(s) 1002
BmrI ACTGGG 3 cut(s) 2072, 2437, 2910
BmuI ACTGGG 3 cut(s) 2072, 2437, 2910
BoxI GACNNNNGTC 1 cut(s) 1796
BpiI GAAGAC 3 cut(s) 1481, 1602, 1722
BpmI CTGGAG 1 cut(s) 3495
Bpu10I CCTNAGC 5 cut(s) 192, 285, 2502, 3065, 3516
Bpu1102I GCTNAGC 1 cut(s) 1560
Bpu14I TTCGAA 1 cut(s) 1614
BpuEI CTTGAG 1 cut(s) 874
BsaI GGTCTC 1 cut(s) 2652
BsaJI CCNNGG 9 cut(s) 75, 177, 350, 936, 1020, 1305, 1943, 2766, 2872
BsaWI WCCGGW 2 cut(s) 202, 2661
BsaXI ACNNNNNCTCC 2 cut(s) 3173, 3203
Bsc4I CCNNNNNNNGG 4 cut(s) 1007, 1054, 2322, 3310
Bse118I RCCGGY 1 cut(s) 2661
Bse1I ACTGG 7 cut(s) 774, 1174, 1493, 2078, 2432, 2916, 3430
Bse3DI GCAATG 3 cut(s) 1358, 1968, 2789
BseBI CCWGG 1 cut(s) 1002
BseDI CCNNGG 9 cut(s) 75, 177, 350, 936, 1020, 1305, 1943, 2766, 2872
BseLI CCNNNNNNNGG 4 cut(s) 1007, 1054, 2322, 3310
BseMI GCAATG 3 cut(s) 1358, 1968, 2789
BseMII CTCAG 8 cut(s) 183, 276, 365, 1178, 1551, 2398, 2493, 3198
BseNI ACTGG 7 cut(s) 774, 1174, 1493, 2078, 2432, 2916, 3430
BseRI GAGGAG 1 cut(s) 2504
BseXI GCAGC 6 cut(s) 356, 754, 1543, 1667, 2189, 3559
BsgI GTGCAG 2 cut(s) 408, 868
BshFI GGCC 2 cut(s) 122, 1942
BshTI ACCGGT 1 cut(s) 2661
BsiHKAI GWGCWC 1 cut(s) 9
BsiSI CCGG 3 cut(s) 203, 296, 2662
BsiWI CGTACG 1 cut(s) 398
BslFI GGGAC 3 cut(s) 694, 2890, 2898
BslI CCNNNNNNNGG 4 cut(s) 1007, 1054, 2322, 3310
BsmBI CGTCTC 1 cut(s) 1376
BsmFI GGGAC 3 cut(s) 694, 2890, 2898
BsmI GAATGC 4 cut(s) 1002, 1365, 1622, 3109
BsnI GGCC 2 cut(s) 122, 1942
Bso31I GGTCTC 1 cut(s) 2652
Bsp119I TTCGAA 1 cut(s) 1614
Bsp1286I GDGCHC 2 cut(s) 9, 490
Bsp1720I GCTNAGC 1 cut(s) 1560
Bsp19I CCATGG 5 cut(s) 75, 177, 936, 1020, 2766
BspACI CCGC 3 cut(s) 32, 667, 2780
BspANI GGCC 2 cut(s) 122, 1942
BspCNI CTCAG 8 cut(s) 184, 277, 366, 1179, 1552, 2397, 2494, 3199
BspHI TCATGA 2 cut(s) 3091, 3271
BspLI GGNNCC 6 cut(s) 132, 489, 1217, 2688, 2914, 2958
BspMI ACCTGC 2 cut(s) 1456, 1946
BspQI GCTCTTC 1 cut(s) 1168
BspT104I TTCGAA 1 cut(s) 1614
BspTI CTTAAG 3 cut(s) 2252, 2891, 3398
BspTNI GGTCTC 1 cut(s) 2652
BsrDI GCAATG 3 cut(s) 1358, 1968, 2789
BsrFI RCCGGY 1 cut(s) 2661
BsrI ACTGG 7 cut(s) 774, 1174, 1493, 2078, 2432, 2916, 3430
BssAI RCCGGY 1 cut(s) 2661
BssECI CCNNGG 9 cut(s) 75, 177, 350, 936, 1020, 1305, 1943, 2766, 2872
BssSI CACGAG 1 cut(s) 2280
BssT1I CCWWGG 9 cut(s) 75, 177, 350, 936, 1020, 1305, 1943, 2766, 2872
Bst2BI CACGAG 1 cut(s) 2280
Bst2UI CCWGG 1 cut(s) 1002
Bst6I CTCTTC 7 cut(s) 150, 243, 1168, 1749, 2982, 3125, 3159
BstAFI CTTAAG 3 cut(s) 2252, 2891, 3398
BstBI TTCGAA 1 cut(s) 1614
BstC8I GCNNGC 5 cut(s) 1084, 1363, 1823, 2003, 3062
BstDSI CCRYGG 5 cut(s) 75, 177, 936, 1020, 2766
BstH2I RGCGCY 1 cut(s) 959
BstHHI GCGC 1 cut(s) 958
BstMWI GCNNNNNNNGC 6 cut(s) 569, 1362, 1505, 1939, 2133, 3400
BstNI CCWGG 1 cut(s) 1002
BstNSI RCATGY 8 cut(s) 1034, 1138, 1768, 2410, 2888, 2906, 3485, 3526
BstPAI GACNNNNGTC 1 cut(s) 1796
BstSCI CCNGG 1 cut(s) 1000
BstSFI CTRYAG 3 cut(s) 2604, 2653, 2822
BstV1I GCAGC 6 cut(s) 356, 754, 1543, 1667, 2189, 3559
BstV2I GAAGAC 3 cut(s) 1481, 1602, 1722
BstX2I RGATCY 8 cut(s) 130, 817, 1215, 1277, 2073, 2686, 2693, 3283
BstYI RGATCY 8 cut(s) 130, 817, 1215, 1277, 2073, 2686, 2693, 3283
BsuI GTATCC 2 cut(s) 421, 2764
BsuRI GGCC 2 cut(s) 122, 1942
BtgI CCRYGG 5 cut(s) 75, 177, 936, 1020, 2766
BtrI CACGTC 1 cut(s) 127
BtsI GCAGTG 2 cut(s) 752, 2417
BtsIMutI CAGTG 5 cut(s) 102, 752, 1184, 2417, 2923
BveI ACCTGC 2 cut(s) 1456, 1946
Cac8I GCNNGC 5 cut(s) 1084, 1363, 1823, 2003, 3062
CciI TCATGA 2 cut(s) 3091, 3271
CfoI GCGC 1 cut(s) 958
Cfr10I RCCGGY 1 cut(s) 2661
Cfr13I GGNCC 3 cut(s) 1309, 2912, 3578
Csp6I GTAC 3 cut(s) 399, 2827, 3423
CspAI ACCGGT 1 cut(s) 2661
CspCI CAANNNNNGTGG 2 cut(s) 1005, 1040
CviQI GTAC 3 cut(s) 399, 2827, 3423
DraI TTTAAA 1 cut(s) 762
EaeI YGGCCR 2 cut(s) 120, 1940
Eam1104I CTCTTC 7 cut(s) 150, 243, 1168, 1749, 2982, 3125, 3159
EarI CTCTTC 7 cut(s) 150, 243, 1168, 1749, 2982, 3125, 3159
Ecl136II GAGCTC 1 cut(s) 7
Eco130I CCWWGG 9 cut(s) 75, 177, 350, 936, 1020, 1305, 1943, 2766, 2872
Eco24I GRGCYC 2 cut(s) 9, 490
Eco31I GGTCTC 1 cut(s) 2652
Eco32I GATATC 1 cut(s) 1705
Eco47I GGWCC 3 cut(s) 1309, 2912, 3578
Eco53kI GAGCTC 1 cut(s) 7
Eco57I CTGAAG 6 cut(s) 1614, 1745, 3038, 3095, 3149, 3219
EcoICRI GAGCTC 1 cut(s) 7
EcoO109I RGGNCCY 1 cut(s) 1309
EcoRI GAATTC 2 cut(s) 1269, 2719
EcoRII CCWGG 1 cut(s) 1000
EcoRV GATATC 1 cut(s) 1705
EcoT14I CCWWGG 9 cut(s) 75, 177, 350, 936, 1020, 1305, 1943, 2766, 2872
EcoT22I ATGCAT 3 cut(s) 611, 1622, 1866
EcoT38I GRGCYC 2 cut(s) 9, 490
ErhI CCWWGG 9 cut(s) 75, 177, 350, 936, 1020, 1305, 1943, 2766, 2872
Esp3I CGTCTC 1 cut(s) 1376
FalI AAGNNNNNCTT 4 cut(s) 1088, 1120, 1414, 1446
FaqI GGGAC 3 cut(s) 694, 2890, 2898
FauNDI CATATG 1 cut(s) 2645
FblI GTMKAC 2 cut(s) 990, 1442
Fnu4HI GCNGC 7 cut(s) 345, 668, 743, 1557, 1681, 2203, 3548
FriOI GRGCYC 2 cut(s) 9, 490
Fsp4HI GCNGC 7 cut(s) 345, 668, 743, 1557, 1681, 2203, 3548
FspBI CTAG 7 cut(s) 482, 2099, 2133, 2192, 2340, 2547, 3438
GlaI GCGC 1 cut(s) 957
GluI GCNGC 7 cut(s) 345, 668, 743, 1557, 1681, 2203, 3548
GsuI CTGGAG 1 cut(s) 3495
HaeII RGCGCY 1 cut(s) 959
HaeIII GGCC 2 cut(s) 122, 1942
HapII CCGG 3 cut(s) 203, 296, 2662
HhaI GCGC 1 cut(s) 958
Hin6I GCGC 1 cut(s) 956
HinP1I GCGC 1 cut(s) 956
HincII GTYRAC 5 cut(s) 1257, 1443, 2313, 2544, 3346
HindII GTYRAC 5 cut(s) 1257, 1443, 2313, 2544, 3346
HindIII AAGCTT 3 cut(s) 756, 3062, 3401
HpaI GTTAAC 1 cut(s) 2544
HpaII CCGG 3 cut(s) 203, 296, 2662
HphI GGTGA 5 cut(s) 1084, 2812, 3047, 3091, 3254
Hpy166II GTNNAC 9 cut(s) 991, 1257, 1443, 2313, 2425, 2544, 2790, 2803, 3346
Hpy8I GTNNAC 9 cut(s) 991, 1257, 1443, 2313, 2425, 2544, 2790, 2803, 3346
Hpy99I CGWCG 3 cut(s) 20, 128, 1444
HpyAV CCTTC 6 cut(s) 1408, 1838, 2566, 3013, 3070, 3194
HpyCH4IV ACGT 6 cut(s) 126, 455, 972, 1439, 2095, 2370
HpyF10VI GCNNNNNNNGC 6 cut(s) 569, 1362, 1505, 1939, 2133, 3400
HpySE526I ACGT 6 cut(s) 126, 455, 972, 1439, 2095, 2370
HspAI GCGC 1 cut(s) 956
KspAI GTTAAC 1 cut(s) 2544
LguI GCTCTTC 1 cut(s) 1168
LmnI GCTCC 3 cut(s) 4, 352, 493
Lsp1109I GCAGC 6 cut(s) 356, 754, 1543, 1667, 2189, 3559
MaeI CTAG 7 cut(s) 482, 2099, 2133, 2192, 2340, 2547, 3438
MaeII ACGT 6 cut(s) 126, 455, 972, 1439, 2095, 2370
MaeIII GTNAC 6 cut(s) 973, 2049, 2219, 2366, 2553, 3069
MfeI CAATTG 2 cut(s) 516, 537
MflI RGATCY 8 cut(s) 130, 817, 1215, 1277, 2073, 2686, 2693, 3283
MhlI GDGCHC 2 cut(s) 9, 490
MlsI TGGCCA 1 cut(s) 1942
MluNI TGGCCA 1 cut(s) 1942
MlyI GAGTC 6 cut(s) 101, 388, 1766, 1811, 2746, 3059
MmeI TCCRAC 6 cut(s) 1305, 1518, 1785, 2332, 3276, 3291
Mox20I TGGCCA 1 cut(s) 1942
Mph1103I ATGCAT 3 cut(s) 611, 1622, 1866
MroXI GAANNNNTTC 1 cut(s) 2576
MscI TGGCCA 1 cut(s) 1942
MslI CAYNNNNRTG 5 cut(s) 807, 1035, 2765, 3270, 3480
Msp20I TGGCCA 1 cut(s) 1942
MspA1I CMGCKG 2 cut(s) 158, 251
MspCI CTTAAG 3 cut(s) 2252, 2891, 3398
MspI CCGG 3 cut(s) 203, 296, 2662
MspR9I CCNGG 1 cut(s) 1002
MunI CAATTG 2 cut(s) 516, 537
Mva1269I GAATGC 4 cut(s) 1002, 1365, 1622, 3109
MvaI CCWGG 1 cut(s) 1002
MwoI GCNNNNNNNGC 6 cut(s) 569, 1362, 1505, 1939, 2133, 3400
NcoI CCATGG 5 cut(s) 75, 177, 936, 1020, 2766
NdeI CATATG 1 cut(s) 2645
NlaIV GGNNCC 6 cut(s) 132, 489, 1217, 2688, 2914, 2958
NmuCI GTSAC 1 cut(s) 973
NsiI ATGCAT 3 cut(s) 611, 1622, 1866
NspI RCATGY 8 cut(s) 1034, 1138, 1768, 2410, 2888, 2906, 3485, 3526
NspV TTCGAA 1 cut(s) 1614
PagI TCATGA 2 cut(s) 3091, 3271
PciI ACATGT 4 cut(s) 1030, 1134, 2902, 3522
PciSI GCTCTTC 1 cut(s) 1168
PctI GAATGC 4 cut(s) 1002, 1365, 1622, 3109
PdmI GAANNNNTTC 1 cut(s) 2576
Pfl23II CGTACG 1 cut(s) 398
PflMI CCANNNNNTGG 2 cut(s) 1007, 3310
PinAI ACCGGT 1 cut(s) 2661
PkrI GCNGC 7 cut(s) 346, 669, 744, 1558, 1682, 2204, 3549
PleI GAGTC 6 cut(s) 100, 388, 1765, 1810, 2746, 3058
PpsI GAGTC 6 cut(s) 100, 388, 1765, 1810, 2746, 3058
PpuMI RGGWCCY 1 cut(s) 1309
PscI ACATGT 4 cut(s) 1030, 1134, 2902, 3522
PshAI GACNNNNGTC 1 cut(s) 1796
PsiI TTATAA 1 cut(s) 1223
Psp124BI GAGCTC 1 cut(s) 9
Psp1406I AACGTT 1 cut(s) 455
Psp5II RGGWCCY 1 cut(s) 1309
Psp6I CCWGG 1 cut(s) 1000
PspGI CCWGG 1 cut(s) 1000
PspLI CGTACG 1 cut(s) 398
PspN4I GGNNCC 6 cut(s) 132, 489, 1217, 2688, 2914, 2958
PspPI GGNCC 3 cut(s) 1309, 2912, 3578
PspPPI RGGWCCY 1 cut(s) 1309
PsuI RGATCY 8 cut(s) 130, 817, 1215, 1277, 2073, 2686, 2693, 3283
PvuII CAGCTG 2 cut(s) 158, 251
RsaI GTAC 3 cut(s) 400, 2828, 3424
RsaNI GTAC 3 cut(s) 399, 2827, 3423
RseI CAYNNNNRTG 5 cut(s) 807, 1035, 2765, 3270, 3480
SacI GAGCTC 1 cut(s) 9
SalI GTCGAC 1 cut(s) 1441
SapI GCTCTTC 1 cut(s) 1168
SatI GCNGC 7 cut(s) 345, 668, 743, 1557, 1681, 2203, 3548
Sau96I GGNCC 3 cut(s) 1309, 2912, 3578
ScaI AGTACT 1 cut(s) 3424
SchI GAGTC 6 cut(s) 101, 388, 1766, 1811, 2746, 3059
ScrFI CCNGG 1 cut(s) 1002
SduI GDGCHC 2 cut(s) 9, 490
SfcI CTRYAG 3 cut(s) 2604, 2653, 2822
SfuI TTCGAA 1 cut(s) 1614
SinI GGWCC 3 cut(s) 1309, 2912, 3578
SmiMI CAYNNNNRTG 5 cut(s) 807, 1035, 2765, 3270, 3480
SmlI CTYRAG 4 cut(s) 889, 2252, 2891, 3398
SmoI CTYRAG 4 cut(s) 889, 2252, 2891, 3398
SpeI ACTAGT 2 cut(s) 2339, 3437
SsiI CCGC 3 cut(s) 32, 667, 2780
SspI AATATT 2 cut(s) 1114, 2867
SspMI CTAG 7 cut(s) 482, 2099, 2133, 2192, 2340, 2547, 3438
SstI GAGCTC 1 cut(s) 9
StyD4I CCNGG 1 cut(s) 1000
StyI CCWWGG 9 cut(s) 75, 177, 350, 936, 1020, 1305, 1943, 2766, 2872
TaiI ACGT 6 cut(s) 129, 458, 975, 1442, 2098, 2373
TaqI TCGA 9 cut(s) 18, 112, 551, 651, 825, 1442, 1614, 1800, 2457
TatI WGTACW 2 cut(s) 2826, 3422
TauI GCSGC 1 cut(s) 670
TscAI CASTG 5 cut(s) 102, 752, 1191, 2417, 2923
TseFI GTSAC 1 cut(s) 973
TseI GCWGC 6 cut(s) 344, 742, 1556, 1680, 2202, 3547
Tsp45I GTSAC 1 cut(s) 973
TspGWI ACGGA 4 cut(s) 674, 1008, 1055, 2828
TspRI CASTG 5 cut(s) 102, 752, 1191, 2417, 2923
Van91I CCANNNNNTGG 2 cut(s) 1007, 3310
Vha464I CTTAAG 3 cut(s) 2252, 2891, 3398
VpaK11BI GGWCC 3 cut(s) 1309, 2912, 3578
XapI RAATTY 8 cut(s) 529, 1269, 1426, 1893, 2273, 2719, 2980, 3142
XbaI TCTAGA 2 cut(s) 2098, 2191
XceI RCATGY 8 cut(s) 1034, 1138, 1768, 2410, 2888, 2906, 3485, 3526
XcmI CCANNNNNNNNNTGG 2 cut(s) 934, 2923
XmiI GTMKAC 2 cut(s) 990, 1442
XmnI GAANNNNTTC 1 cut(s) 2576
XspI CTAG 7 cut(s) 482, 2099, 2133, 2192, 2340, 2547, 3438
ZrmI AGTACT 1 cut(s) 3424
Zsp2I ATGCAT 3 cut(s) 611, 1622, 1866
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.