Prupe.8G123700_v2.0.a1

PLAC8 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0009650
Physical Location & Seq
Forward (+)
14950196 .. 14951965
1770 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G123700.1

Sequence Viewer

Length: 576 bp
ATGTATCCTACAGCACCTCCTGACGATGAGAAATATGCAGCTGATCATAATCACCAAAATATTGCAAATCCTGTCCCAGCTCCAGGGCTGAACAATCCTAGTGTATTACGTACGTACACTCCTCCCCCGTACGCATACAATACGCAGCCTTCTGGTCATGTAAGGGGGAACTGGTCCACTGGTCTTTGCCATTGTTTTGATGATCCTGCAAATTGTATGATCACTGCCTTTTGCCCTTGCATCACGTTCGGCCAGATAGCCGAGATAGTGAGCCAAGGCGCTACATCTTGTGCTTCACAGGGAGTGTGCTATGGGGTTCTTCTAGCAACAACTGCAAATGCATGCTTGTATTCGTGCTTCTACCGCTCGCGGTTGAGAGGCCAATATGACTTGGAAGAAGCTCCTTGTGTAGACTGCCTGGTGCACTTCTGCTGTGCTACTTGTGCACTGTGTCAAGAGTACAGAGAGCTCAGAAATCGCGGTTTCGATATGGGGATAGGTTGGGAAGCCAATATGGACCGACGAAGGCGCGGAGTTACTGCAGCTCCGACTGTGGTTCCAGGGATGACCAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0008285 GO:0042127 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0065007
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PLAC8

Protein Analysis

192

Amino Acids

20.94

Weight (kDa)

6.17

Isoelectric Point (pI)

58.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 366
AccI GTMKAC 1 cut(s) 411
AccII CGCG 3 cut(s) 370, 480, 531
AciI CCGC 4 cut(s) 364, 370, 480, 531
AclWI GGATC 1 cut(s) 197
AcoI YGGCCR 1 cut(s) 250
AfaI GTAC 4 cut(s) 112, 116, 131, 461
AfiI CCNNNNNNNGG 1 cut(s) 83
AjnI CCWGG 3 cut(s) 82, 417, 559
AluBI AGCT 5 cut(s) 41, 80, 401, 469, 545
AluI AGCT 5 cut(s) 41, 80, 401, 469, 545
Alw21I GWGCWC 3 cut(s) 426, 448, 471
Alw44I GTGCAC 2 cut(s) 422, 444
AlwI GGATC 1 cut(s) 197
AoxI GGCC 2 cut(s) 250, 379
ApaLI GTGCAC 2 cut(s) 422, 444
ApeKI GCWGC 3 cut(s) 38, 145, 542
AspLEI GCGC 2 cut(s) 281, 531
AspS9I GGNCC 2 cut(s) 174, 517
AsuHPI GGTGA 1 cut(s) 44
AvaII GGWCC 2 cut(s) 174, 517
BaeGI GKGCMC 2 cut(s) 426, 448
BanII GRGCYC 1 cut(s) 471
BarI GAAGNNNNNNTAC 2 cut(s) 341, 373
Bbv12I GWGCWC 3 cut(s) 426, 448, 471
BbvI GCAGC 3 cut(s) 50, 157, 554
BcgI CGANNNNNNTGC 2 cut(s) 229, 263
BciT130I CCWGG 3 cut(s) 84, 419, 561
BciVI GTATCC 1 cut(s) 15
BclI TGATCA 2 cut(s) 43, 219
BfaI CTAG 2 cut(s) 99, 323
BfmI CTRYAG 2 cut(s) 9, 540
BfoI RGCGCY 1 cut(s) 282
BfuI GTATCC 1 cut(s) 15
BisI GCNGC 3 cut(s) 39, 146, 543
BlsI GCNGC 3 cut(s) 40, 147, 544
Bme1390I CCNGG 3 cut(s) 84, 419, 561
Bme18I GGWCC 2 cut(s) 174, 517
BmgT120I GGNCC 2 cut(s) 174, 517
BmiI GGNNCC 1 cut(s) 558
BmrFI CCNGG 3 cut(s) 84, 419, 561
BmsI GCATC 1 cut(s) 249
BpmI CTGGAG 1 cut(s) 66
BsaAI YACGTR 2 cut(s) 110, 114
BsaBI GATNNNNATC 1 cut(s) 48
BsaJI CCNNGG 3 cut(s) 83, 274, 560
BsaXI ACNNNNNCTCC 5 cut(s) 31, 103, 133, 529, 559
Bsc4I CCNNNNNNNGG 1 cut(s) 83
Bse1I ACTGG 2 cut(s) 176, 184
Bse8I GATNNNNATC 1 cut(s) 48
BseBI CCWGG 3 cut(s) 84, 419, 561
BseDI CCNNGG 3 cut(s) 83, 274, 560
BseGI GGATG 1 cut(s) 570
BseJI GATNNNNATC 1 cut(s) 48
BseLI CCNNNNNNNGG 1 cut(s) 83
BseMII CTCAG 1 cut(s) 484
BseNI ACTGG 2 cut(s) 176, 184
BseRI GAGGAG 1 cut(s) 111
BseSI GKGCMC 2 cut(s) 426, 448
BseXI GCAGC 3 cut(s) 50, 157, 554
BseYI CCCAGC 1 cut(s) 76
Bsh1236I CGCG 3 cut(s) 370, 480, 531
BshFI GGCC 2 cut(s) 252, 381
BsiHKAI GWGCWC 3 cut(s) 426, 448, 471
BsiWI CGTACG 2 cut(s) 110, 129
BslFI GGGAC 1 cut(s) 59
BslI CCNNNNNNNGG 1 cut(s) 83
BsmFI GGGAC 1 cut(s) 59
BsnI GGCC 2 cut(s) 252, 381
Bsp1286I GDGCHC 3 cut(s) 426, 448, 471
Bsp143I GATC 3 cut(s) 43, 202, 219
BspACI CCGC 4 cut(s) 364, 370, 480, 531
BspANI GGCC 2 cut(s) 252, 381
BspCNI CTCAG 1 cut(s) 483
BspFNI CGCG 3 cut(s) 370, 480, 531
BspLI GGNNCC 1 cut(s) 558
BspMAI CTGCAG 1 cut(s) 544
BspPI GGATC 1 cut(s) 197
BsrBI CCGCTC 1 cut(s) 366
BsrI ACTGG 2 cut(s) 176, 184
BssECI CCNNGG 3 cut(s) 83, 274, 560
BssMI GATC 3 cut(s) 43, 202, 219
BssT1I CCWWGG 1 cut(s) 274
Bst2UI CCWGG 3 cut(s) 84, 419, 561
Bst4CI ACNGT 2 cut(s) 450, 553
BstAPI GCANNNNNTGC 1 cut(s) 332
BstBAI YACGTR 2 cut(s) 110, 114
BstC8I GCNNGC 2 cut(s) 343, 368
BstDEI CTNAG 1 cut(s) 470
BstF5I GGATG 1 cut(s) 570
BstFNI CGCG 3 cut(s) 370, 480, 531
BstH2I RGCGCY 1 cut(s) 282
BstHHI GCGC 2 cut(s) 281, 531
BstKTI GATC 3 cut(s) 46, 205, 222
BstMBI GATC 3 cut(s) 43, 202, 219
BstMWI GCNNNNNNNGC 3 cut(s) 332, 363, 443
BstNI CCWGG 3 cut(s) 84, 419, 561
BstNSI RCATGY 1 cut(s) 345
BstSCI CCNGG 3 cut(s) 82, 417, 559
BstSFI CTRYAG 2 cut(s) 9, 540
BstSLI GKGCMC 2 cut(s) 426, 448
BstSNI TACGTA 2 cut(s) 110, 114
BstUI CGCG 3 cut(s) 370, 480, 531
BstV1I GCAGC 3 cut(s) 50, 157, 554
BsuI GTATCC 1 cut(s) 15
BsuRI GGCC 2 cut(s) 252, 381
BtsCI GGATG 1 cut(s) 570
BtsI GCAGTG 1 cut(s) 222
BtsIMutI CAGTG 3 cut(s) 177, 222, 446
Cac8I GCNNGC 2 cut(s) 343, 368
CfoI GCGC 2 cut(s) 281, 531
Cfr13I GGNCC 2 cut(s) 174, 517
Csp6I GTAC 4 cut(s) 111, 115, 130, 460
CviAII CATG 2 cut(s) 158, 342
CviQI GTAC 4 cut(s) 111, 115, 130, 460
DdeI CTNAG 1 cut(s) 470
DpnI GATC 3 cut(s) 45, 204, 221
DpnII GATC 3 cut(s) 43, 202, 219
EaeI YGGCCR 1 cut(s) 250
Ecl136II GAGCTC 1 cut(s) 469
Eco105I TACGTA 2 cut(s) 110, 114
Eco130I CCWWGG 1 cut(s) 274
Eco24I GRGCYC 1 cut(s) 471
Eco47I GGWCC 2 cut(s) 174, 517
Eco53kI GAGCTC 1 cut(s) 469
EcoICRI GAGCTC 1 cut(s) 469
EcoRII CCWGG 3 cut(s) 82, 417, 559
EcoT14I CCWWGG 1 cut(s) 274
EcoT22I ATGCAT 1 cut(s) 343
EcoT38I GRGCYC 1 cut(s) 471
ErhI CCWWGG 1 cut(s) 274
FaeI CATG 2 cut(s) 161, 345
FaqI GGGAC 1 cut(s) 59
FatI CATG 2 cut(s) 157, 341
FbaI TGATCA 2 cut(s) 43, 219
FblI GTMKAC 1 cut(s) 411
Fnu4HI GCNGC 3 cut(s) 39, 146, 543
FriOI GRGCYC 1 cut(s) 471
Fsp4HI GCNGC 3 cut(s) 39, 146, 543
FspBI CTAG 2 cut(s) 99, 323
GlaI GCGC 2 cut(s) 280, 530
GluI GCNGC 3 cut(s) 39, 146, 543
GsaI CCCAGC 1 cut(s) 80
GsuI CTGGAG 1 cut(s) 66
HaeII RGCGCY 1 cut(s) 282
HaeIII GGCC 2 cut(s) 252, 381
HhaI GCGC 2 cut(s) 281, 531
Hin1II CATG 2 cut(s) 161, 345
Hin6I GCGC 2 cut(s) 279, 529
HinP1I GCGC 2 cut(s) 279, 529
HphI GGTGA 1 cut(s) 44
Hpy166II GTNNAC 5 cut(s) 117, 177, 412, 424, 446
Hpy188I TCNGA 2 cut(s) 473, 549
Hpy188III TCNNGA 2 cut(s) 20, 455
Hpy8I GTNNAC 5 cut(s) 117, 177, 412, 424, 446
Hpy99I CGWCG 1 cut(s) 525
HpyAV CCTTC 2 cut(s) 159, 519
HpyCH4III ACNGT 2 cut(s) 450, 553
HpyCH4IV ACGT 3 cut(s) 109, 113, 245
HpyCH4V TGCA 9 cut(s) 38, 65, 209, 240, 335, 341, 424, 446, 542
HpyF10VI GCNNNNNNNGC 3 cut(s) 332, 363, 443
HpyF3I CTNAG 1 cut(s) 470
HpySE526I ACGT 3 cut(s) 109, 113, 245
Hsp92II CATG 2 cut(s) 161, 345
HspAI GCGC 2 cut(s) 279, 529
Ksp22I TGATCA 2 cut(s) 43, 219
Kzo9I GATC 3 cut(s) 43, 202, 219
LmnI GCTCC 3 cut(s) 85, 406, 550
Lsp1109I GCAGC 3 cut(s) 50, 157, 554
LweI GCATC 1 cut(s) 249
MaeI CTAG 2 cut(s) 99, 323
MaeII ACGT 3 cut(s) 109, 113, 245
MaeIII GTNAC 1 cut(s) 535
MalI GATC 3 cut(s) 45, 204, 221
MbiI CCGCTC 1 cut(s) 366
MboI GATC 3 cut(s) 43, 202, 219
MboII GAAGA 2 cut(s) 311, 407
MhlI GDGCHC 3 cut(s) 426, 448, 471
MluCI AATT 1 cut(s) 211
MmeI TCCRAC 1 cut(s) 572
MnlI CCTC 3 cut(s) 27, 132, 371
Mph1103I ATGCAT 1 cut(s) 343
MspA1I CMGCKG 1 cut(s) 41
MspR9I CCNGG 3 cut(s) 84, 419, 561
MvaI CCWGG 3 cut(s) 84, 419, 561
MvnI CGCG 3 cut(s) 370, 480, 531
MwoI GCNNNNNNNGC 3 cut(s) 332, 363, 443
NdeII GATC 3 cut(s) 43, 202, 219
NlaIII CATG 2 cut(s) 161, 345
NlaIV GGNNCC 1 cut(s) 558
NmeAIII GCCGAG 1 cut(s) 286
NsiI ATGCAT 1 cut(s) 343
NspI RCATGY 1 cut(s) 345
PaeI GCATGC 1 cut(s) 345
Pfl23II CGTACG 2 cut(s) 110, 129
PkrI GCNGC 3 cut(s) 40, 147, 544
Ppu21I YACGTR 2 cut(s) 110, 114
Psp124BI GAGCTC 1 cut(s) 471
Psp6I CCWGG 3 cut(s) 82, 417, 559
PspFI CCCAGC 1 cut(s) 76
PspGI CCWGG 3 cut(s) 82, 417, 559
PspLI CGTACG 2 cut(s) 110, 129
PspN4I GGNNCC 1 cut(s) 558
PspPI GGNCC 2 cut(s) 174, 517
PstI CTGCAG 1 cut(s) 544
PvuII CAGCTG 1 cut(s) 41
RsaI GTAC 4 cut(s) 112, 116, 131, 461
RsaNI GTAC 4 cut(s) 111, 115, 130, 460
SacI GAGCTC 1 cut(s) 471
SatI GCNGC 3 cut(s) 39, 146, 543
Sau3AI GATC 3 cut(s) 43, 202, 219
Sau96I GGNCC 2 cut(s) 174, 517
ScrFI CCNGG 3 cut(s) 84, 419, 561
SduI GDGCHC 3 cut(s) 426, 448, 471
SfaNI GCATC 1 cut(s) 249
SfcI CTRYAG 2 cut(s) 9, 540
SinI GGWCC 2 cut(s) 174, 517
SnaBI TACGTA 2 cut(s) 110, 114
SphI GCATGC 1 cut(s) 345
Sse9I AATT 1 cut(s) 211
SsiI CCGC 4 cut(s) 364, 370, 480, 531
SspI AATATT 1 cut(s) 61
SspMI CTAG 2 cut(s) 99, 323
SstI GAGCTC 1 cut(s) 471
StyD4I CCNGG 3 cut(s) 82, 417, 559
StyI CCWWGG 1 cut(s) 274
TaaI ACNGT 2 cut(s) 450, 553
TaiI ACGT 3 cut(s) 112, 116, 248
TaqI TCGA 1 cut(s) 486
TaqII GACCGA 1 cut(s) 534
TasI AATT 1 cut(s) 211
TatI WGTACW 1 cut(s) 459
TscAI CASTG 3 cut(s) 184, 229, 453
TseI GCWGC 3 cut(s) 38, 145, 542
TspRI CASTG 3 cut(s) 184, 229, 453
VneI GTGCAC 2 cut(s) 422, 444
VpaK11BI GGWCC 2 cut(s) 174, 517
XceI RCATGY 1 cut(s) 345
XmiI GTMKAC 1 cut(s) 411
XspI CTAG 2 cut(s) 99, 323
Zsp2I ATGCAT 1 cut(s) 343
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.