Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0009650

Physical Location & Seq

Genomic Coordinates Reverse (-)

1280273 .. 1281490

Gene Structure 1218 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g01900.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGGTGTGTGTACGTATATGCCCCAACAGTGTGCAAAAAAAGATGTCGGGTGGATGGACAACTGGCCTGCTTGACTGCTTCAGTGACTGCAGTGTCTGCTGCTTGGGATTTTGGTGTCCTTGCGTTGTTGCTGGGCGTGTTGCAGAGATTGTCTCCAAAGGACATACCGGTTGTTTTCAGCAGGGATGTTTGTATGCACTAATCAATTCCTATACTCAGTTAGCATTCTGCATTCCTTGCGGTTTCTGCATTACTTGCGGCTTTCGAACCAAACTGAGGGAGCACTACAAGTTGGAGGAAAAACCTTGCAACGATTGCTGTGTTCATTTCTTCTGCCACTCCTGTGCCTTGTGCCAAGAATATCGTGAGCTCGAGAACCGTGGTTTCACTGTTGCCATTGGCTGGGAACAAAATGCGTCACAGAATCCTGGAGTGGTGACACCACCATCTGTGCAAGGTGACATGAATCGTCAGACTGATCACAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0007275 GO:0007276 GO:0008150 GO:0009555 GO:0009987 GO:0019953 GO:0022412 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0032504 GO:0044703 GO:0048229 GO:0048232 GO:0048235 GO:0048609 GO:0048856 GO:0048869 GO:0051704 GO:0055046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PLAC8

Protein Analysis

163

Amino Acids

18.02

Weight (kDa)

7.38

Isoelectric Point (pI)

31.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009650)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g06180 FvH4_2g06190 FvH4_4g33931
malus_domestica	MD00G1133300.v1.1 MD00G1133500.v1.1 MD05G1079900.v1.1 MD10G1106000.v1.1
prunus_persica	Prupe.8G123700_v2.0.a1
pyrus_communis	pycom13g01900 pycom13g01930
rosa_chinensis	RchiOBHm_Chr6g0257021
rosa_laevigata	RLG00000014669
rosa_multiflora	Rmu_sc0000659.1_g000017 Rmu_sc0006706.1_g000003
rosa_roxburghii	Rroxscaffold_5G00383990 Rroxscaffold_7G00208440
rosa_rugosa	Rorug05G0575700
rosa_samantha	Rh6AG093800 Rh6BG084700 Rh6CG081400 Rh6DG076800
rosa_wichuraiana	Rw6G008070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	92
AccB7I	CCANNNNNTGG	1 cut(s)	402
AciI	CCGC	2 cut(s)	240, 258
AcuI	CTGAAG	1 cut(s)	64
AfaI	GTAC	1 cut(s)	12
AfiI	CCNNNNNNNGG	2 cut(s)	276, 402
AgeI	ACCGGT	1 cut(s)	167
AjnI	CCWGG	1 cut(s)	427
AleI	CACNNNNGTG	1 cut(s)	342
AluBI	AGCT	1 cut(s)	370
AluI	AGCT	1 cut(s)	370
Alw21I	GWGCWC	2 cut(s)	285, 372
Alw26I	GTCTC	1 cut(s)	157
AlwNI	CAGNNNCTG	2 cut(s)	87, 96
Ama87I	CYCGRG	1 cut(s)	371
AoxI	GGCC	1 cut(s)	64
ApeKI	GCWGC	1 cut(s)	99
AsiGI	ACCGGT	1 cut(s)	167
AsuHPI	GGTGA	2 cut(s)	448, 470
AsuII	TTCGAA	1 cut(s)	265
AvaI	CYCGRG	1 cut(s)	371
BanII	GRGCYC	1 cut(s)	372
Bbv12I	GWGCWC	2 cut(s)	285, 372
BbvI	GCAGC	1 cut(s)	86
BccI	CCATC	2 cut(s)	48, 454
BciT130I	CCWGG	1 cut(s)	429
BclI	TGATCA	1 cut(s)	478
BcoDI	GTCTC	1 cut(s)	157
BfmI	CTRYAG	1 cut(s)	88
BisI	GCNGC	2 cut(s)	100, 259
BlsI	GCNGC	2 cut(s)	101, 260
Bme1390I	CCNGG	1 cut(s)	429
BmeT110I	CYCGRG	1 cut(s)	371
BmrFI	CCNGG	1 cut(s)	429
BplI	GAGNNNNNCTC	2 cut(s)	137, 169
BpmI	CTGGAG	1 cut(s)	450
Bpu14I	TTCGAA	1 cut(s)	265
BsaAI	YACGTR	1 cut(s)	14
BsaJI	CCNNGG	1 cut(s)	379
BsaWI	WCCGGW	1 cut(s)	167
Bsc4I	CCNNNNNNNGG	2 cut(s)	276, 402
Bse118I	RCCGGY	1 cut(s)	167
Bse1I	ACTGG	1 cut(s)	67
BseBI	CCWGG	1 cut(s)	429
BseDI	CCNNGG	1 cut(s)	379
BseGI	GGATG	2 cut(s)	59, 191
BseLI	CCNNNNNNNGG	2 cut(s)	276, 402
BseMII	CTCAG	2 cut(s)	230, 266
BseNI	ACTGG	1 cut(s)	67
BseXI	GCAGC	1 cut(s)	86
BseYI	CCCAGC	2 cut(s)	131, 402
BshFI	GGCC	1 cut(s)	66
BshTI	ACCGGT	1 cut(s)	167
BsiHKAI	GWGCWC	2 cut(s)	285, 372
BsiHKCI	CYCGRG	1 cut(s)	371
BsiSI	CCGG	1 cut(s)	168
BslI	CCNNNNNNNGG	2 cut(s)	276, 402
BsmAI	GTCTC	1 cut(s)	157
BsmI	GAATGC	2 cut(s)	224, 231
BsnI	GGCC	1 cut(s)	66
BsoBI	CYCGRG	1 cut(s)	371
Bsp119I	TTCGAA	1 cut(s)	265
Bsp1286I	GDGCHC	2 cut(s)	285, 372
Bsp143I	GATC	1 cut(s)	478
BspACI	CCGC	2 cut(s)	240, 258
BspANI	GGCC	1 cut(s)	66
BspCNI	CTCAG	2 cut(s)	229, 267
BspMAI	CTGCAG	1 cut(s)	92
BspT104I	TTCGAA	1 cut(s)	265
BsrFI	RCCGGY	1 cut(s)	167
BsrI	ACTGG	1 cut(s)	67
BssAI	RCCGGY	1 cut(s)	167
BssECI	CCNNGG	1 cut(s)	379
BssMI	GATC	1 cut(s)	478
Bst2UI	CCWGG	1 cut(s)	429
Bst4CI	ACNGT	3 cut(s)	29, 380, 391
BstAPI	GCANNNNNTGC	4 cut(s)	96, 237, 255, 315
BstBAI	YACGTR	1 cut(s)	14
BstBI	TTCGAA	1 cut(s)	265
BstC8I	GCNNGC	1 cut(s)	68
BstDEI	CTNAG	2 cut(s)	216, 275
BstDSI	CCRYGG	1 cut(s)	379
BstF5I	GGATG	2 cut(s)	59, 191
BstKTI	GATC	1 cut(s)	481
BstMAI	GTCTC	1 cut(s)	157
BstMBI	GATC	1 cut(s)	478
BstMWI	GCNNNNNNNGC	5 cut(s)	96, 237, 246, 255, 315
BstNI	CCWGG	1 cut(s)	429
BstSCI	CCNGG	1 cut(s)	427
BstSFI	CTRYAG	1 cut(s)	88
BstSNI	TACGTA	1 cut(s)	14
BstV1I	GCAGC	1 cut(s)	86
BsuRI	GGCC	1 cut(s)	66
BtgI	CCRYGG	1 cut(s)	379
BtsCI	GGATG	2 cut(s)	59, 191
BtsI	GCAGTG	1 cut(s)	97
BtsIMutI	CAGTG	4 cut(s)	34, 88, 97, 387
Cac8I	GCNNGC	1 cut(s)	68
CaiI	CAGNNNCTG	2 cut(s)	87, 96
Cfr10I	RCCGGY	1 cut(s)	167
CseI	GACGC	1 cut(s)	405
Csp6I	GTAC	1 cut(s)	11
CspAI	ACCGGT	1 cut(s)	167
CviAII	CATG	1 cut(s)	463
CviJI	RGCY	4 cut(s)	66, 261, 370, 402
CviKI_1	RGCY	4 cut(s)	66, 261, 370, 402
CviQI	GTAC	1 cut(s)	11
DdeI	CTNAG	2 cut(s)	216, 275
DpnI	GATC	1 cut(s)	480
DpnII	GATC	1 cut(s)	478
DrdI	GACNNNNNNGTC	1 cut(s)	92
DseDI	GACNNNNNNGTC	1 cut(s)	92
Ecl136II	GAGCTC	1 cut(s)	370
Eco105I	TACGTA	1 cut(s)	14
Eco24I	GRGCYC	1 cut(s)	372
Eco53kI	GAGCTC	1 cut(s)	370
Eco57I	CTGAAG	1 cut(s)	64
Eco88I	CYCGRG	1 cut(s)	371
EcoICRI	GAGCTC	1 cut(s)	370
EcoRII	CCWGG	1 cut(s)	427
EcoT38I	GRGCYC	1 cut(s)	372
FaeI	CATG	1 cut(s)	466
FaiI	YATR	6 cut(s)	17, 19, 165, 195, 213, 464
FatI	CATG	1 cut(s)	462
FbaI	TGATCA	1 cut(s)	478
Fnu4HI	GCNGC	2 cut(s)	100, 259
FokI	GGATG	2 cut(s)	66, 198
FriOI	GRGCYC	1 cut(s)	372
Fsp4HI	GCNGC	2 cut(s)	100, 259
GluI	GCNGC	2 cut(s)	100, 259
GsaI	CCCAGC	2 cut(s)	135, 406
GsuI	CTGGAG	1 cut(s)	450
HaeIII	GGCC	1 cut(s)	66
HapII	CCGG	1 cut(s)	168
HgaI	GACGC	1 cut(s)	405
Hin1II	CATG	1 cut(s)	466
HinfI	GANTC	2 cut(s)	424, 466
HpaII	CCGG	1 cut(s)	168
HphI	GGTGA	2 cut(s)	448, 470
Hpy166II	GTNNAC	1 cut(s)	11
Hpy188I	TCNGA	1 cut(s)	474
Hpy188III	TCNNGA	2 cut(s)	365, 373
Hpy8I	GTNNAC	1 cut(s)	11
HpyCH4III	ACNGT	3 cut(s)	29, 380, 391
HpyCH4IV	ACGT	1 cut(s)	13
HpyCH4V	TGCA	8 cut(s)	34, 90, 143, 197, 231, 249, 309, 454
HpyF10VI	GCNNNNNNNGC	5 cut(s)	96, 237, 246, 255, 315
HpyF3I	CTNAG	2 cut(s)	216, 275
HpySE526I	ACGT	1 cut(s)	13
Hsp92II	CATG	1 cut(s)	466
Ksp22I	TGATCA	1 cut(s)	478
Kzo9I	GATC	1 cut(s)	478
LmnI	GCTCC	1 cut(s)	280
LpnPI	CCDG	9 cut(s)	48, 80, 117, 167, 181, 355, 388, 414, 441
Lsp1109I	GCAGC	1 cut(s)	86
MaeII	ACGT	1 cut(s)	13
MaeIII	GTNAC	4 cut(s)	83, 417, 436, 458
MalI	GATC	1 cut(s)	480
MboI	GATC	1 cut(s)	478
MboII	GAAGA	1 cut(s)	322
MhlI	GDGCHC	2 cut(s)	285, 372
MluCI	AATT	1 cut(s)	205
MmeI	TCCRAC	1 cut(s)	273
MnlI	CCTC	2 cut(s)	270, 289
MslI	CAYNNNNRTG	1 cut(s)	342
MspI	CCGG	1 cut(s)	168
MspR9I	CCNGG	1 cut(s)	429
Mva1269I	GAATGC	2 cut(s)	224, 231
MvaI	CCWGG	1 cut(s)	429
MwoI	GCNNNNNNNGC	5 cut(s)	96, 237, 246, 255, 315
NdeII	GATC	1 cut(s)	478
NlaIII	CATG	1 cut(s)	466
NmuCI	GTSAC	4 cut(s)	83, 417, 436, 458
NspV	TTCGAA	1 cut(s)	265
OliI	CACNNNNGTG	1 cut(s)	342
PaeR7I	CTCGAG	1 cut(s)	371
PctI	GAATGC	2 cut(s)	224, 231
PfeI	GAWTC	2 cut(s)	424, 466
PflMI	CCANNNNNTGG	1 cut(s)	402
PfoI	TCCNGGA	1 cut(s)	427
PinAI	ACCGGT	1 cut(s)	167
PkrI	GCNGC	2 cut(s)	101, 260
Ppu21I	YACGTR	1 cut(s)	14
Psp124BI	GAGCTC	1 cut(s)	372
Psp6I	CCWGG	1 cut(s)	427
PspFI	CCCAGC	2 cut(s)	131, 402
PspGI	CCWGG	1 cut(s)	427
PstI	CTGCAG	1 cut(s)	92
PstNI	CAGNNNCTG	2 cut(s)	87, 96
RsaI	GTAC	1 cut(s)	12
RsaNI	GTAC	1 cut(s)	11
RseI	CAYNNNNRTG	1 cut(s)	342
SacI	GAGCTC	1 cut(s)	372
SatI	GCNGC	2 cut(s)	100, 259
Sau3AI	GATC	1 cut(s)	478
ScrFI	CCNGG	1 cut(s)	429
SduI	GDGCHC	2 cut(s)	285, 372
SetI	ASST	4 cut(s)	16, 307, 372, 460
SfcI	CTRYAG	1 cut(s)	88
Sfr274I	CTCGAG	1 cut(s)	371
SfuI	TTCGAA	1 cut(s)	265
SlaI	CTCGAG	1 cut(s)	371
SmiMI	CAYNNNNRTG	1 cut(s)	342
SmlI	CTYRAG	1 cut(s)	371
SmoI	CTYRAG	1 cut(s)	371
SnaBI	TACGTA	1 cut(s)	14
Sse9I	AATT	1 cut(s)	205
SsiI	CCGC	2 cut(s)	240, 258
SstI	GAGCTC	1 cut(s)	372
StyD4I	CCNGG	1 cut(s)	427
TaaI	ACNGT	3 cut(s)	29, 380, 391
TaiI	ACGT	1 cut(s)	16
TaqI	TCGA	2 cut(s)	265, 372
TasI	AATT	1 cut(s)	205
TauI	GCSGC	1 cut(s)	261
TfiI	GAWTC	2 cut(s)	424, 466
TscAI	CASTG	4 cut(s)	34, 88, 97, 394
TseFI	GTSAC	4 cut(s)	83, 417, 436, 458
TseI	GCWGC	1 cut(s)	99
Tsp45I	GTSAC	4 cut(s)	83, 417, 436, 458
TspDTI	ATGAA	2 cut(s)	314, 479
TspRI	CASTG	4 cut(s)	34, 88, 97, 394
Van91I	CCANNNNNTGG	1 cut(s)	402
XhoI	CTCGAG	1 cut(s)	371

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.