Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0016252

Physical Location & Seq

Genomic Coordinates Forward (+)

5345470 .. 5346119

Gene Structure 650 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g06414.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGGCAAAACTGCGAATAAACGGGAAAGCAGGACAAACATGTAAGTTCATAGGGGGAAATAACAACAGGAATGATGATTTCAAGCCTAAGTTCAATATCAGTGAAGCAGCCAAGAAAAGGGACTCAAAGCTCACTGATTCTAGAGCTACTAACCCCATGACATCAAATACTCAGATCCTGCAAAATGTGTTAGGAGAATCTGAAATGGCATGCTCAGTTGTCTCTACTACAACCAAGAGTACAGAGAAGAATCAAGTTGGTGAAAGTCGCTGTTTTAAAAAACTCGCCTCACCTAAAGCTTTGTCTGCCACCATTTGCACTCAACTGAAGCCTACTTTCATTGCAACTCAGTCAAATGTGAATGCTTCTCATTCACAGGATGTCAAGCCTCTGCCACAATTTTACAAGGAGATTGAAGCTTTTCCGATTCCAAGTACTTGGCTAGCTACTTCTACTAAAGACAAAATTCTTCTGAATTGTAGGCAAGCTGGTGAGTCTTCAATTTTGTGGCGATCACTACCTCTCATACCTCCCGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

180

Amino Acids

19.61

Weight (kDa)

9.65

Isoelectric Point (pI)

48.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0016252)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g06414 FvH4_6g09731 FvH4_7g15531
rosa_chinensis	RchiOBHm_Chr3g0453851 RchiOBHm_Chr4g0389911 RchiOBHm_Chr5g0017791 RchiOBHm_Chr7g0182071 RchiOBHm_Chr7g0243861
rosa_multiflora	Rmu_sc0000968.1_g000018 Rmu_sc0003076.1_g000010 Rmu_sc0004479.1_g000006 Rmu_sc0012468.1_g000001
rosa_roxburghii	Rroxscaffold_7G00208120
rosa_rugosa	Rorug06G0070100
rosa_samantha	Rh5CG142100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	169
AcsI	RAATTY	1 cut(s)	465
AcuI	CTGAAG	1 cut(s)	347
AfaI	GTAC	2 cut(s)	241, 436
AfiI	CCNNNNNNNGG	1 cut(s)	117
AflIII	ACRYGT	1 cut(s)	38
AgsI	TTSAA	4 cut(s)	82, 94, 416, 501
AluBI	AGCT	6 cut(s)	130, 146, 299, 419, 446, 488
AluI	AGCT	6 cut(s)	130, 146, 299, 419, 446, 488
Alw26I	GTCTC	1 cut(s)	226
AlwI	GGATC	1 cut(s)	169
AlwNI	CAGNNNCTG	1 cut(s)	178
ApeKI	GCWGC	1 cut(s)	107
ApoI	RAATTY	1 cut(s)	465
Asp700I	GAANNNNTTC	1 cut(s)	420
AsuC2I	CCSGG	1 cut(s)	534
AsuHPI	GGTGA	3 cut(s)	272, 282, 503
AsuNHI	GCTAGC	1 cut(s)	442
BbsI	GAAGAC	1 cut(s)	489
BbvI	GCAGC	1 cut(s)	119
BcnI	CCSGG	1 cut(s)	534
BcoDI	GTCTC	1 cut(s)	226
BfaI	CTAG	2 cut(s)	141, 443
BisI	GCNGC	1 cut(s)	108
BlsI	GCNGC	1 cut(s)	109
BmcAI	AGTACT	1 cut(s)	436
Bme1390I	CCNGG	1 cut(s)	534
BmrFI	CCNGG	1 cut(s)	534
BmtI	GCTAGC	1 cut(s)	446
BpiI	GAAGAC	1 cut(s)	489
BpuMI	CCSGG	1 cut(s)	534
Bsc4I	CCNNNNNNNGG	1 cut(s)	117
Bse3DI	GCAATG	1 cut(s)	339
BseGI	GGATG	1 cut(s)	385
BseLI	CCNNNNNNNGG	1 cut(s)	117
BseMI	GCAATG	1 cut(s)	339
BseMII	CTCAG	3 cut(s)	185, 228, 362
BseXI	GCAGC	1 cut(s)	119
BsiSI	CCGG	1 cut(s)	534
BslFI	GGGAC	1 cut(s)	134
BslI	CCNNNNNNNGG	1 cut(s)	117
BsmAI	GTCTC	1 cut(s)	226
BsmFI	GGGAC	1 cut(s)	134
BsmI	GAATGC	1 cut(s)	367
Bsp143I	GATC	2 cut(s)	174, 512
BspCNI	CTCAG	3 cut(s)	184, 227, 361
BspOI	GCTAGC	1 cut(s)	446
BspPI	GGATC	1 cut(s)	169
BsrDI	GCAATG	1 cut(s)	339
BssMI	GATC	2 cut(s)	174, 512
BstC8I	GCNNGC	3 cut(s)	211, 444, 486
BstDEI	CTNAG	4 cut(s)	87, 171, 214, 348
BstF5I	GGATG	1 cut(s)	385
BstKTI	GATC	2 cut(s)	177, 515
BstMAI	GTCTC	1 cut(s)	226
BstMBI	GATC	2 cut(s)	174, 512
BstMWI	GCNNNNNNNGC	1 cut(s)	305
BstNSI	RCATGY	2 cut(s)	42, 213
BstSCI	CCNGG	1 cut(s)	532
BstV1I	GCAGC	1 cut(s)	119
BstV2I	GAAGAC	1 cut(s)	489
BstX2I	RGATCY	1 cut(s)	174
BstXI	CCANNNNNNTGG	1 cut(s)	438
BstYI	RGATCY	1 cut(s)	174
BtsCI	GGATG	1 cut(s)	385
BtsIMutI	CAGTG	2 cut(s)	106, 132
Cac8I	GCNNGC	3 cut(s)	211, 444, 486
CaiI	CAGNNNCTG	1 cut(s)	178
Csp6I	GTAC	2 cut(s)	240, 435
CviAII	CATG	3 cut(s)	39, 157, 210
CviQI	GTAC	2 cut(s)	240, 435
DdeI	CTNAG	4 cut(s)	87, 171, 214, 348
DpnI	GATC	2 cut(s)	176, 514
DpnII	GATC	2 cut(s)	174, 512
DraI	TTTAAA	1 cut(s)	277
Eco57I	CTGAAG	1 cut(s)	347
FaeI	CATG	3 cut(s)	42, 160, 213
FaiI	YATR	5 cut(s)	40, 50, 158, 211, 527
FaqI	GGGAC	1 cut(s)	134
FatI	CATG	3 cut(s)	38, 156, 209
Fnu4HI	GCNGC	1 cut(s)	108
FokI	GGATG	1 cut(s)	392
Fsp4HI	GCNGC	1 cut(s)	108
FspBI	CTAG	2 cut(s)	141, 443
GluI	GCNGC	1 cut(s)	108
HapII	CCGG	1 cut(s)	534
Hin1II	CATG	3 cut(s)	42, 160, 213
HindIII	AAGCTT	2 cut(s)	297, 417
HinfI	GANTC	6 cut(s)	122, 137, 197, 250, 427, 494
HpaII	CCGG	1 cut(s)	534
HphI	GGTGA	3 cut(s)	272, 282, 503
Hpy188I	TCNGA	4 cut(s)	174, 202, 426, 474
Hpy188III	TCNNGA	1 cut(s)	141
HpyCH4V	TGCA	3 cut(s)	181, 318, 344
HpyF10VI	GCNNNNNNNGC	1 cut(s)	305
HpyF3I	CTNAG	4 cut(s)	87, 171, 214, 348
Hsp92II	CATG	3 cut(s)	42, 160, 213
Kzo9I	GATC	2 cut(s)	174, 512
LpnPI	CCDG	5 cut(s)	15, 52, 191, 362, 474
Lsp1109I	GCAGC	1 cut(s)	119
MaeI	CTAG	2 cut(s)	141, 443
MalI	GATC	2 cut(s)	176, 514
MboI	GATC	2 cut(s)	174, 512
MboII	GAAGA	3 cut(s)	259, 461, 489
MflI	RGATCY	1 cut(s)	174
MluCI	AATT	4 cut(s)	398, 465, 475, 501
MlyI	GAGTC	2 cut(s)	116, 503
MnlI	CCTC	4 cut(s)	298, 399, 531, 540
MroXI	GAANNNNTTC	1 cut(s)	420
MseI	TTAA	1 cut(s)	276
MspI	CCGG	1 cut(s)	534
MspR9I	CCNGG	1 cut(s)	534
Mva1269I	GAATGC	1 cut(s)	367
MwoI	GCNNNNNNNGC	1 cut(s)	305
NciI	CCSGG	1 cut(s)	534
NdeII	GATC	2 cut(s)	174, 512
NheI	GCTAGC	1 cut(s)	442
NlaIII	CATG	3 cut(s)	42, 160, 213
NspI	RCATGY	2 cut(s)	42, 213
PaeI	GCATGC	1 cut(s)	213
PciI	ACATGT	1 cut(s)	38
PctI	GAATGC	1 cut(s)	367
PdmI	GAANNNNTTC	1 cut(s)	420
PfeI	GAWTC	4 cut(s)	137, 197, 250, 427
PfoI	TCCNGGA	1 cut(s)	532
PkrI	GCNGC	1 cut(s)	109
PleI	GAGTC	2 cut(s)	116, 502
PpsI	GAGTC	2 cut(s)	116, 502
PscI	ACATGT	1 cut(s)	38
PstNI	CAGNNNCTG	1 cut(s)	178
PsuI	RGATCY	1 cut(s)	174
RsaI	GTAC	2 cut(s)	241, 436
RsaNI	GTAC	2 cut(s)	240, 435
SaqAI	TTAA	1 cut(s)	276
SatI	GCNGC	1 cut(s)	108
Sau3AI	GATC	2 cut(s)	174, 512
ScaI	AGTACT	1 cut(s)	436
SchI	GAGTC	2 cut(s)	116, 503
ScrFI	CCNGG	1 cut(s)	534
SetI	ASST	9 cut(s)	132, 148, 295, 301, 421, 448, 490, 523, 532
SphI	GCATGC	1 cut(s)	213
Sse9I	AATT	4 cut(s)	398, 465, 475, 501
SspMI	CTAG	2 cut(s)	141, 443
StyD4I	CCNGG	1 cut(s)	532
TasI	AATT	4 cut(s)	398, 465, 475, 501
TatI	WGTACW	2 cut(s)	239, 434
TfiI	GAWTC	4 cut(s)	137, 197, 250, 427
Tru1I	TTAA	1 cut(s)	276
Tru9I	TTAA	1 cut(s)	276
TscAI	CASTG	2 cut(s)	106, 139
TseI	GCWGC	1 cut(s)	107
TspDTI	ATGAA	2 cut(s)	37, 328
TspRI	CASTG	2 cut(s)	106, 139
XapI	RAATTY	1 cut(s)	465
XbaI	TCTAGA	1 cut(s)	140
XceI	RCATGY	2 cut(s)	42, 213
XmnI	GAANNNNTTC	1 cut(s)	420
XspI	CTAG	2 cut(s)	141, 443
ZrmI	AGTACT	1 cut(s)	436

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.