Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0016252

Physical Location & Seq

Genomic Coordinates Reverse (-)

70150433 .. 70151911

Gene Structure 1479 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ21857

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1257 bp

ATGTTAGCTCAATATGGTATGTACTCTGGGATGTTGTCATCCACTTGCTTTGGTCAACCTTCTGGGATGCAATCAAATCTTCTGTCTTCCATTGGTAATCATGGAGTCACTCAGAATCGTATGTGCCCTTATGTGACTTCTGGCATGACTAATGTGCATCAATATAATGCTTCCCCTGCAACCACGCAATATGGTGTTTTCACTCCACAGCACACTATGATTGCAAGCACTTGTTTTGCTATACCACCCGCATCAGCTACCTCACCAGCTTCATTCCAACACAACTTCATTCCATCCAGTGGTAACTATCAGTCTATGCCATTTATGGGAAACGATGGATTCATGATGAACAACAATATGGTAAATGAAGGTAGTTACAATCCAATGCCATTTCTGTTTGATGTCTCTCATCAAACATCTGGTTTTATTGCTCAAAATGGTTCCAATATGTCACTGCCATTTAGTCATCAACAACAACATGCATCTACTATGAATAACTGCAACTACAACAGCACTCCACACCAGAATGCAATTTTATCTCAGCAGAATTTCTCTCATCAAACTGTTCAGAATGATTCTTCAAACAATGATTATCAGCAGAATGGCTTTATCAATTCCTTTGCAGATGGTGGCTACTCAGATGACAGTACTTCATATCCAAATTTTCCAAGTAACAAGGGTACAAACAACTACAACAATAGGTCCAATAAAAACAATGGGAAGCCAAGAACCAATGGGAACTTCATCAATGTCATTGTGTGTCAGATCTGTGAAAAACCAGGGCACAGTGCATACAAGTGTTATTACAGGAATTGTCAACAACAGCATGGTGCATCAAGTTCTTCGGTAGTATGCCAAATTTGTGACAAAATTGGTCACCCTGCCTCCAAATGTCATCTTAGAAATCCTCAACCTCAGATATTTGCTACAAGGCATCAGTATGATTGTCATCCACCATCCCCTGCAGCACCTCAAGCTTTGTCTGCTTCCATTTGCACTCAACCAAAGCCACCCTCCATTGCTACTCAGCCAACTAACAATGCTTCTCAATCACAAGTTGTCAAGTCTCTGCCATTTTCATTATCAGTTCCTACTCGACCTCAATTGCAGCAAGCTCTCCTCACGAAACTTGCAGTTTTGCGGACACCAAGAACTTGGCTACTACCTTCCACTCTGGACAGAAATTTAATGAATTGTAGGCAAGCTTGTGAGTCTTCGAATTCGTGGCGATCACTTCCTCTCATTCCTCCTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

418

Amino Acids

45.81

Weight (kDa)

8.86

Isoelectric Point (pI)

46.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016252)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g06414 FvH4_6g09731 FvH4_7g15531
rosa_chinensis	RchiOBHm_Chr3g0453851 RchiOBHm_Chr4g0389911 RchiOBHm_Chr5g0017791 RchiOBHm_Chr7g0182071 RchiOBHm_Chr7g0243861
rosa_multiflora	Rmu_sc0000968.1_g000018 Rmu_sc0003076.1_g000010 Rmu_sc0004479.1_g000006 Rmu_sc0012468.1_g000001
rosa_roxburghii	Rroxscaffold_7G00208120
rosa_rugosa	Rorug06G0070100
rosa_samantha	Rh5CG142100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	299
AciI	CCGC	2 cut(s)	249, 1141
AcsI	RAATTY	5 cut(s)	547, 661, 858, 1183, 1219
AfaI	GTAC	3 cut(s)	23, 649, 682
AfiI	CCNNNNNNNGG	2 cut(s)	299, 326
AgsI	TTSAA	1 cut(s)	582
AjnI	CCWGG	2 cut(s)	778, 1249
AjuI	GAANNNNNNNTTGG	2 cut(s)	725, 757
AluBI	AGCT	6 cut(s)	8, 257, 269, 977, 1115, 1205
AluI	AGCT	6 cut(s)	8, 257, 269, 977, 1115, 1205
Alw26I	GTCTC	2 cut(s)	409, 1071
ApeKI	GCWGC	2 cut(s)	965, 1108
ApoI	RAATTY	5 cut(s)	547, 661, 858, 1183, 1219
ArsI	GACNNNNNNTTYG	2 cut(s)	68, 100
AspS9I	GGNCC	1 cut(s)	702
AsuHPI	GGTGA	2 cut(s)	255, 869
AsuII	TTCGAA	1 cut(s)	1217
AvaII	GGWCC	1 cut(s)	702
BaeGI	GKGCMC	2 cut(s)	128, 786
BbsI	GAAGAC	2 cut(s)	78, 1206
BbvI	GCAGC	2 cut(s)	977, 1120
BccI	CCATC	4 cut(s)	301, 329, 620, 964
BciT130I	CCWGG	2 cut(s)	780, 1251
BcoDI	GTCTC	2 cut(s)	409, 1071
BfmI	CTRYAG	1 cut(s)	963
BglII	AGATCT	1 cut(s)	765
BisI	GCNGC	2 cut(s)	966, 1109
BlsI	GCNGC	2 cut(s)	967, 1110
BmcAI	AGTACT	1 cut(s)	649
Bme1390I	CCNGG	2 cut(s)	780, 1251
Bme18I	GGWCC	1 cut(s)	702
BmgT120I	GGNCC	1 cut(s)	702
BmiI	GGNNCC	1 cut(s)	442
BmrFI	CCNGG	2 cut(s)	780, 1251
BmsI	GCATC	6 cut(s)	57, 166, 260, 491, 842, 943
BpiI	GAAGAC	2 cut(s)	78, 1206
Bpu14I	TTCGAA	1 cut(s)	1217
BpuEI	CTTGAG	1 cut(s)	957
BsaBI	GATNNNNATC	1 cut(s)	948
BsaJI	CCNNGG	1 cut(s)	779
BsaXI	ACNNNNNCTCC	2 cut(s)	869, 899
Bsc4I	CCNNNNNNNGG	2 cut(s)	299, 326
Bse1I	ACTGG	1 cut(s)	297
Bse3DI	GCAATG	1 cut(s)	1017
Bse8I	GATNNNNATC	1 cut(s)	948
BseBI	CCWGG	2 cut(s)	780, 1251
BseDI	CCNNGG	1 cut(s)	779
BseGI	GGATG	6 cut(s)	36, 38, 72, 293, 949, 956
BseJI	GATNNNNATC	1 cut(s)	948
BseLI	CCNNNNNNNGG	2 cut(s)	299, 326
BseMI	GCAATG	1 cut(s)	1017
BseMII	CTCAG	5 cut(s)	125, 554, 651, 929, 1040
BseNI	ACTGG	1 cut(s)	297
BseRI	GAGGAG	1 cut(s)	1109
BseSI	GKGCMC	2 cut(s)	128, 786
BseXI	GCAGC	2 cut(s)	977, 1120
BslI	CCNNNNNNNGG	2 cut(s)	299, 326
BsmAI	GTCTC	2 cut(s)	409, 1071
BsmI	GAATGC	1 cut(s)	532
Bsp119I	TTCGAA	1 cut(s)	1217
Bsp1286I	GDGCHC	2 cut(s)	128, 786
Bsp143I	GATC	2 cut(s)	765, 1229
BspACI	CCGC	2 cut(s)	249, 1141
BspCNI	CTCAG	5 cut(s)	124, 553, 650, 928, 1039
BspHI	TCATGA	1 cut(s)	342
BspLI	GGNNCC	1 cut(s)	442
BspMAI	CTGCAG	1 cut(s)	967
BspT104I	TTCGAA	1 cut(s)	1217
BsrDI	GCAATG	1 cut(s)	1017
BsrI	ACTGG	1 cut(s)	297
BssECI	CCNNGG	1 cut(s)	779
BssMI	GATC	2 cut(s)	765, 1229
Bst2UI	CCWGG	2 cut(s)	780, 1251
Bst4CI	ACNGT	3 cut(s)	565, 647, 788
BstBI	TTCGAA	1 cut(s)	1217
BstC8I	GCNNGC	3 cut(s)	226, 1113, 1203
BstDEI	CTNAG	6 cut(s)	111, 540, 637, 899, 915, 1026
BstEII	GGTNACC	1 cut(s)	875
BstF5I	GGATG	6 cut(s)	36, 38, 72, 293, 949, 956
BstKTI	GATC	2 cut(s)	768, 1232
BstMAI	GTCTC	2 cut(s)	409, 1071
BstMBI	GATC	2 cut(s)	765, 1229
BstMWI	GCNNNNNNNGC	3 cut(s)	176, 974, 983
BstNI	CCWGG	2 cut(s)	780, 1251
BstNSI	RCATGY	1 cut(s)	482
BstPI	GGTNACC	1 cut(s)	875
BstSCI	CCNGG	2 cut(s)	778, 1249
BstSFI	CTRYAG	1 cut(s)	963
BstSLI	GKGCMC	2 cut(s)	128, 786
BstV1I	GCAGC	2 cut(s)	977, 1120
BstV2I	GAAGAC	2 cut(s)	78, 1206
BstX2I	RGATCY	1 cut(s)	765
BstXI	CCANNNNNNTGG	1 cut(s)	1155
BstYI	RGATCY	1 cut(s)	765
BtsCI	GGATG	6 cut(s)	36, 38, 72, 293, 949, 956
BtsI	GCAGTG	1 cut(s)	452
BtsIMutI	CAGTG	3 cut(s)	304, 452, 793
Cac8I	GCNNGC	3 cut(s)	226, 1113, 1203
CciI	TCATGA	1 cut(s)	342
Cfr13I	GGNCC	1 cut(s)	702
Csp6I	GTAC	3 cut(s)	22, 648, 681
CspCI	CAANNNNNGTGG	2 cut(s)	31, 66
CviAII	CATG	5 cut(s)	101, 145, 343, 479, 827
CviQI	GTAC	3 cut(s)	22, 648, 681
DdeI	CTNAG	6 cut(s)	111, 540, 637, 899, 915, 1026
DpnI	GATC	2 cut(s)	767, 1231
DpnII	GATC	2 cut(s)	765, 1229
Eco47I	GGWCC	1 cut(s)	702
Eco91I	GGTNACC	1 cut(s)	875
EcoO65I	GGTNACC	1 cut(s)	875
EcoRI	GAATTC	1 cut(s)	1219
EcoRII	CCWGG	2 cut(s)	778, 1249
EcoT22I	ATGCAT	1 cut(s)	484
FaeI	CATG	5 cut(s)	104, 148, 346, 482, 830
FatI	CATG	5 cut(s)	100, 144, 342, 478, 826
FauI	CCCGC	1 cut(s)	256
Fnu4HI	GCNGC	2 cut(s)	966, 1109
FokI	GGATG	6 cut(s)	25, 43, 79, 280, 936, 943
Fsp4HI	GCNGC	2 cut(s)	966, 1109
GluI	GCNGC	2 cut(s)	966, 1109
Hin1II	CATG	5 cut(s)	104, 148, 346, 482, 830
HincII	GTYRAC	2 cut(s)	56, 818
HindII	GTYRAC	2 cut(s)	56, 818
HindIII	AAGCTT	2 cut(s)	975, 1203
HinfI	GANTC	5 cut(s)	105, 115, 339, 575, 1211
HphI	GGTGA	2 cut(s)	255, 869
Hpy166II	GTNNAC	2 cut(s)	56, 818
Hpy188I	TCNGA	5 cut(s)	114, 570, 640, 765, 918
Hpy188III	TCNNGA	3 cut(s)	343, 1123, 1175
Hpy8I	GTNNAC	2 cut(s)	56, 818
HpyAV	CCTTC	3 cut(s)	69, 362, 1176
HpyCH4III	ACNGT	3 cut(s)	565, 647, 788
HpyF10VI	GCNNNNNNNGC	3 cut(s)	176, 974, 983
HpyF3I	CTNAG	6 cut(s)	111, 540, 637, 899, 915, 1026
Hsp92II	CATG	5 cut(s)	104, 148, 346, 482, 830
Kzo9I	GATC	2 cut(s)	765, 1229
Lsp1109I	GCAGC	2 cut(s)	977, 1120
LweI	GCATC	6 cut(s)	57, 166, 260, 491, 842, 943
MaeIII	GTNAC	8 cut(s)	106, 133, 302, 374, 450, 671, 863, 875
MalI	GATC	2 cut(s)	767, 1231
MboI	GATC	2 cut(s)	765, 1229
MboII	GAAGA	5 cut(s)	71, 78, 570, 834, 1206
MfeI	CAATTG	1 cut(s)	1103
MflI	RGATCY	1 cut(s)	765
MhlI	GDGCHC	2 cut(s)	128, 786
MlyI	GAGTC	2 cut(s)	114, 1220
MmeI	TCCRAC	1 cut(s)	301
Mph1103I	ATGCAT	1 cut(s)	484
MseI	TTAA	1 cut(s)	1187
MslI	CAYNNNNRTG	3 cut(s)	525, 796, 939
MspR9I	CCNGG	2 cut(s)	780, 1251
MunI	CAATTG	1 cut(s)	1103
Mva1269I	GAATGC	1 cut(s)	532
MvaI	CCWGG	2 cut(s)	780, 1251
MwoI	GCNNNNNNNGC	3 cut(s)	176, 974, 983
NdeII	GATC	2 cut(s)	765, 1229
NlaIII	CATG	5 cut(s)	104, 148, 346, 482, 830
NlaIV	GGNNCC	1 cut(s)	442
NmuCI	GTSAC	5 cut(s)	106, 133, 450, 863, 875
NsiI	ATGCAT	1 cut(s)	484
NspI	RCATGY	1 cut(s)	482
NspV	TTCGAA	1 cut(s)	1217
PagI	TCATGA	1 cut(s)	342
PctI	GAATGC	1 cut(s)	532
PfeI	GAWTC	3 cut(s)	115, 339, 575
PflMI	CCANNNNNTGG	1 cut(s)	299
PkrI	GCNGC	2 cut(s)	967, 1110
PleI	GAGTC	2 cut(s)	113, 1219
PpsI	GAGTC	2 cut(s)	113, 1219
Psp6I	CCWGG	2 cut(s)	778, 1249
PspEI	GGTNACC	1 cut(s)	875
PspGI	CCWGG	2 cut(s)	778, 1249
PspN4I	GGNNCC	1 cut(s)	442
PspPI	GGNCC	1 cut(s)	702
PstI	CTGCAG	1 cut(s)	967
PsuI	RGATCY	1 cut(s)	765
RsaI	GTAC	3 cut(s)	23, 649, 682
RsaNI	GTAC	3 cut(s)	22, 648, 681
RseI	CAYNNNNRTG	3 cut(s)	525, 796, 939
SaqAI	TTAA	1 cut(s)	1187
SatI	GCNGC	2 cut(s)	966, 1109
Sau3AI	GATC	2 cut(s)	765, 1229
Sau96I	GGNCC	1 cut(s)	702
ScaI	AGTACT	1 cut(s)	649
SchI	GAGTC	2 cut(s)	114, 1220
ScrFI	CCNGG	2 cut(s)	780, 1251
SduI	GDGCHC	2 cut(s)	128, 786
SfaNI	GCATC	6 cut(s)	57, 166, 260, 491, 842, 943
SfcI	CTRYAG	1 cut(s)	963
SfuI	TTCGAA	1 cut(s)	1217
SinI	GGWCC	1 cut(s)	702
SmiMI	CAYNNNNRTG	3 cut(s)	525, 796, 939
SmlI	CTYRAG	1 cut(s)	972
SmoI	CTYRAG	1 cut(s)	972
SsiI	CCGC	2 cut(s)	249, 1141
StyD4I	CCNGG	2 cut(s)	778, 1249
TaaI	ACNGT	3 cut(s)	565, 647, 788
TaqI	TCGA	2 cut(s)	1096, 1217
TatI	WGTACW	2 cut(s)	21, 647
TfiI	GAWTC	3 cut(s)	115, 339, 575
Tru1I	TTAA	1 cut(s)	1187
Tru9I	TTAA	1 cut(s)	1187
TscAI	CASTG	3 cut(s)	304, 459, 793
TseFI	GTSAC	5 cut(s)	106, 133, 450, 863, 875
TseI	GCWGC	2 cut(s)	965, 1108
Tsp45I	GTSAC	5 cut(s)	106, 133, 450, 863, 875
TspRI	CASTG	3 cut(s)	304, 459, 793
Van91I	CCANNNNNTGG	1 cut(s)	299
VpaK11BI	GGWCC	1 cut(s)	702
XapI	RAATTY	5 cut(s)	547, 661, 858, 1183, 1219
XceI	RCATGY	1 cut(s)	482
ZrmI	AGTACT	1 cut(s)	649
Zsp2I	ATGCAT	1 cut(s)	484

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.