RchiOBHm_Chr3g0453851

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
Physical Location & Seq
Forward (+)
4139587 .. 4139941
355 bp
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UTR
Exon/CDS
Intron
PRQ42091

Sequence Viewer

Length: 186 bp
ATGAACAAAGTAGATACCAAGGAAGCTGAGGGTAGTTTGCAGCATGCTCTCAAGAAAATGGAAGCTTTGCCAACACCAGGAACTTGGCTCCTTCCTTCCATTCCGGACAGAAATCTATTGAATTGTAGACAAGCTTGTGAGTCTACGAATTTATGGCGATTACTTCCTCTCATTCCTCCTGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

61

Amino Acids

6.81

Weight (kDa)

7.82

Isoelectric Point (pI)

43.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 127, 143
AccIII TCCGGA 1 cut(s) 103
AcsI RAATTY 1 cut(s) 148
AfiI CCNNNNNNNGG 1 cut(s) 77
AgsI TTSAA 1 cut(s) 121
AjnI CCWGG 2 cut(s) 76, 178
AluBI AGCT 3 cut(s) 26, 65, 134
AluI AGCT 3 cut(s) 26, 65, 134
Aor13HI TCCGGA 1 cut(s) 103
ApeKI GCWGC 1 cut(s) 40
ApoI RAATTY 1 cut(s) 148
BbvCI CCTCAGC 1 cut(s) 27
BbvI GCAGC 1 cut(s) 52
BciT130I CCWGG 2 cut(s) 78, 180
BisI GCNGC 1 cut(s) 41
BlsI GCNGC 1 cut(s) 42
Bme1390I CCNGG 2 cut(s) 78, 180
BmiI GGNNCC 1 cut(s) 89
BmrFI CCNGG 2 cut(s) 78, 180
Bpu10I CCTNAGC 1 cut(s) 27
BpuEI CTTGAG 1 cut(s) 35
BsaJI CCNNGG 1 cut(s) 18
BsaWI WCCGGW 1 cut(s) 103
Bsc4I CCNNNNNNNGG 1 cut(s) 77
BseAI TCCGGA 1 cut(s) 103
BseBI CCWGG 2 cut(s) 78, 180
BseDI CCNNGG 1 cut(s) 18
BseLI CCNNNNNNNGG 1 cut(s) 77
BseMII CTCAG 1 cut(s) 18
BseXI GCAGC 1 cut(s) 52
BsiSI CCGG 1 cut(s) 104
BslI CCNNNNNNNGG 1 cut(s) 77
Bsp13I TCCGGA 1 cut(s) 103
BspCNI CTCAG 1 cut(s) 19
BspEI TCCGGA 1 cut(s) 103
BspLI GGNNCC 1 cut(s) 89
BssECI CCNNGG 1 cut(s) 18
BssT1I CCWWGG 1 cut(s) 18
Bst2UI CCWGG 2 cut(s) 78, 180
BstC8I GCNNGC 1 cut(s) 45
BstDEI CTNAG 1 cut(s) 27
BstNI CCWGG 2 cut(s) 78, 180
BstNSI RCATGY 1 cut(s) 47
BstSCI CCNGG 2 cut(s) 76, 178
BstV1I GCAGC 1 cut(s) 52
BstXI CCANNNNNNTGG 1 cut(s) 84
Cac8I GCNNGC 1 cut(s) 45
CviAII CATG 1 cut(s) 44
CviJI RGCY 4 cut(s) 26, 65, 88, 134
CviKI_1 RGCY 4 cut(s) 26, 65, 88, 134
DdeI CTNAG 1 cut(s) 27
Eco130I CCWWGG 1 cut(s) 18
EcoRII CCWGG 2 cut(s) 76, 178
EcoT14I CCWWGG 1 cut(s) 18
ErhI CCWWGG 1 cut(s) 18
FaeI CATG 1 cut(s) 47
FaiI YATR 2 cut(s) 45, 154
FatI CATG 1 cut(s) 43
FblI GTMKAC 2 cut(s) 127, 143
Fnu4HI GCNGC 1 cut(s) 41
Fsp4HI GCNGC 1 cut(s) 41
GluI GCNGC 1 cut(s) 41
HapII CCGG 1 cut(s) 104
Hin1II CATG 1 cut(s) 47
HindIII AAGCTT 2 cut(s) 63, 132
HinfI GANTC 1 cut(s) 140
HpaII CCGG 1 cut(s) 104
Hpy166II GTNNAC 2 cut(s) 128, 144
Hpy188III TCNNGA 2 cut(s) 52, 104
Hpy8I GTNNAC 2 cut(s) 128, 144
HpyAV CCTTC 2 cut(s) 101, 105
HpyCH4V TGCA 1 cut(s) 40
HpyF3I CTNAG 1 cut(s) 27
Hsp92II CATG 1 cut(s) 47
Kpn2I TCCGGA 1 cut(s) 103
LmnI GCTCC 1 cut(s) 93
LpnPI CCDG 4 cut(s) 63, 90, 117, 165
Lsp1109I GCAGC 1 cut(s) 52
MluCI AATT 2 cut(s) 121, 148
MlyI GAGTC 1 cut(s) 149
MnlI CCTC 3 cut(s) 22, 177, 186
MroI TCCGGA 1 cut(s) 103
MspI CCGG 1 cut(s) 104
MspR9I CCNGG 2 cut(s) 78, 180
MvaI CCWGG 2 cut(s) 78, 180
NlaIII CATG 1 cut(s) 47
NlaIV GGNNCC 1 cut(s) 89
NspI RCATGY 1 cut(s) 47
PaeI GCATGC 1 cut(s) 47
PkrI GCNGC 1 cut(s) 42
PleI GAGTC 1 cut(s) 148
PpsI GAGTC 1 cut(s) 148
Psp6I CCWGG 2 cut(s) 76, 178
PspGI CCWGG 2 cut(s) 76, 178
PspN4I GGNNCC 1 cut(s) 89
SatI GCNGC 1 cut(s) 41
SchI GAGTC 1 cut(s) 149
ScrFI CCNGG 2 cut(s) 78, 180
SetI ASST 3 cut(s) 28, 67, 136
SgeI CNNG 9 cut(s) 31, 56, 64, 89, 90, 96, 116, 143, 147
SmlI CTYRAG 1 cut(s) 50
SmoI CTYRAG 1 cut(s) 50
SphI GCATGC 1 cut(s) 47
Sse9I AATT 2 cut(s) 121, 148
StyD4I CCNGG 2 cut(s) 76, 178
StyI CCWWGG 1 cut(s) 18
TasI AATT 2 cut(s) 121, 148
TseI GCWGC 1 cut(s) 40
TspDTI ATGAA 1 cut(s) 17
XapI RAATTY 1 cut(s) 148
XceI RCATGY 1 cut(s) 47
XmiI GTMKAC 2 cut(s) 127, 143
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.