FvH4_7g15531

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0016252
Physical Location & Seq
Forward (+)
13426633 .. 13428641
2009 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g15531.t1

Sequence Viewer

Length: 990 bp
ATGACGATTTCTAACACCTGCAACGCCGTTTCTGTGCGACTTGATGACAACAACTATCCCAATCTGTTTCAAAGTGAAAATGATGGCACTCATTTAGGCAATTCTGGGCCTTATGAGCGTTGGCTGGAGCAGGATAGCATTGTGATTTGTATCATTACAAATACGTTTTCTACTGATGCACTTACTCGTGATTGGATGTCAAACTTCAGAAAAGGGCTTCCTTGTGAGTATAGTCAGACCAGGCAGATTATAAGAAGCAAAAACAATATTGATTCGGAAGATATGAGGTATTTGTTATTGTCTGCTGAAGCTGAAATTGATTTTCAGAATAAGGCATTTGCATTATCATCTTTGTCTTCTATGGCTGGTCTCAATGGTTCAGGTGATCATTCATCACAAAATGCTCAGTTTGCCATCAGAGGGAATGCTGAATTGCAAAATGGTGTTGGTCCTTCATTGCCAAAGGCACAATTTCATCAGCAACATGGAAGTTGCATCAACAGGAGAGACTATTTCAAGCCTACATTCAAGAATAGTAACGCAGCCAAGAAAAGGGATTCTAAGGTGCTTCCTGGAAAGCCAAACCACATGACATCAGTCATTCAGAACCTGCAAAATGTGTCAGGAGTATTTGAAATGACGGACTCAACTGCTTCTACTACCATCAAGAATACAGAGAAGATTCAAGTTGGTGTATCACCTAAAGTTTTGTCTGCAACCATCTCCACTCAACCAAAGTTAGTCTCCATTGCTACTCAATCAAATCACAATGCTCCACAATCACAGCTCAAGCCTCTGCAAGTTGCCCCTGCACCTTCATTGTCACTAAAGAAAATAGTAGCTTTGCCGACATCAGACACTCTGCTGCACTCTTATAATCGGGACATAAATCTAATGAATTGCGGACAAGCTTGTGCGTCTCTACGGGTTTGTGGAAATCTTGACCTCTCATACCTCCCAGATGAAATCACATTCTCTGATGCAACCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

330

Amino Acids

36.08

Weight (kDa)

7.61

Isoelectric Point (pI)

40.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 251, 876
AarI CACCTGC 1 cut(s) 26
Acc36I ACCTGC 2 cut(s) 26, 618
AciI CCGC 1 cut(s) 903
AcuI CTGAAG 2 cut(s) 190, 327
AfiI CCNNNNNNNGG 2 cut(s) 420, 552
AgsI TTSAA 5 cut(s) 71, 517, 529, 635, 686
AjnI CCWGG 2 cut(s) 239, 571
AluBI AGCT 4 cut(s) 311, 787, 842, 911
AluI AGCT 4 cut(s) 311, 787, 842, 911
Alw26I GTCTC 4 cut(s) 374, 501, 748, 924
AlwNI CAGNNNCTG 1 cut(s) 610
AoxI GGCC 1 cut(s) 107
ApeKI GCWGC 2 cut(s) 542, 865
AspS9I GGNCC 2 cut(s) 107, 449
AsuHPI GGTGA 2 cut(s) 395, 690
AvaII GGWCC 1 cut(s) 449
BauI CACGAG 1 cut(s) 186
BbsI GAAGAC 1 cut(s) 348
BbvI GCAGC 2 cut(s) 554, 852
BccI CCATC 4 cut(s) 77, 422, 671, 728
BceAI ACGGC 1 cut(s) 11
BciT130I CCWGG 2 cut(s) 241, 573
BclI TGATCA 1 cut(s) 385
BcoDI GTCTC 4 cut(s) 374, 501, 748, 924
BfaI CTAG 1 cut(s) 988
BfuAI ACCTGC 2 cut(s) 26, 618
BisI GCNGC 2 cut(s) 543, 866
BlsI GCNGC 2 cut(s) 544, 867
Bme1390I CCNGG 2 cut(s) 241, 573
Bme18I GGWCC 1 cut(s) 449
BmgT120I GGNCC 2 cut(s) 107, 449
BmrFI CCNGG 2 cut(s) 241, 573
BmsI GCATC 3 cut(s) 166, 504, 970
BoxI GACNNNNGTC 1 cut(s) 596
BpiI GAAGAC 1 cut(s) 348
BpmI CTGGAG 1 cut(s) 146
BpuEI CTTGAG 1 cut(s) 773
BsaBI GATNNNNATC 1 cut(s) 149
BsaI GGTCTC 1 cut(s) 374
Bsc4I CCNNNNNNNGG 2 cut(s) 420, 552
Bse3DI GCAATG 2 cut(s) 455, 747
Bse8I GATNNNNATC 1 cut(s) 149
BseBI CCWGG 2 cut(s) 241, 573
BseGI GGATG 1 cut(s) 201
BseJI GATNNNNATC 1 cut(s) 149
BseLI CCNNNNNNNGG 2 cut(s) 420, 552
BseMI GCAATG 2 cut(s) 455, 747
BseMII CTCAG 1 cut(s) 419
BseXI GCAGC 2 cut(s) 554, 852
BsgI GTGCAG 2 cut(s) 795, 851
BshFI GGCC 1 cut(s) 109
BslFI GGGAC 1 cut(s) 896
BslI CCNNNNNNNGG 2 cut(s) 420, 552
BsmAI GTCTC 4 cut(s) 374, 501, 748, 924
BsmBI CGTCTC 1 cut(s) 924
BsmFI GGGAC 1 cut(s) 896
BsmI GAATGC 1 cut(s) 430
BsnI GGCC 1 cut(s) 109
Bso31I GGTCTC 1 cut(s) 374
Bsp143I GATC 1 cut(s) 385
BspACI CCGC 1 cut(s) 903
BspANI GGCC 1 cut(s) 109
BspCNI CTCAG 1 cut(s) 418
BspMI ACCTGC 2 cut(s) 26, 618
BspTNI GGTCTC 1 cut(s) 374
BsrDI GCAATG 2 cut(s) 455, 747
BssMI GATC 1 cut(s) 385
BssSI CACGAG 1 cut(s) 186
Bst2BI CACGAG 1 cut(s) 186
Bst2UI CCWGG 2 cut(s) 241, 573
BstDEI CTNAG 2 cut(s) 405, 561
BstF5I GGATG 1 cut(s) 201
BstKTI GATC 1 cut(s) 388
BstMAI GTCTC 4 cut(s) 374, 501, 748, 924
BstMBI GATC 1 cut(s) 385
BstMWI GCNNNNNNNGC 2 cut(s) 115, 410
BstNI CCWGG 2 cut(s) 241, 573
BstPAI GACNNNNGTC 1 cut(s) 596
BstSCI CCNGG 2 cut(s) 239, 571
BstV1I GCAGC 2 cut(s) 554, 852
BstV2I GAAGAC 1 cut(s) 348
BsuRI GGCC 1 cut(s) 109
BtsCI GGATG 1 cut(s) 201
BveI ACCTGC 2 cut(s) 26, 618
CaiI CAGNNNCTG 1 cut(s) 610
Cfr13I GGNCC 2 cut(s) 107, 449
CseI GACGC 1 cut(s) 906
CviAII CATG 2 cut(s) 485, 589
DdeI CTNAG 2 cut(s) 405, 561
DpnI GATC 1 cut(s) 387
DpnII GATC 1 cut(s) 385
Eco31I GGTCTC 1 cut(s) 374
Eco47I GGWCC 1 cut(s) 449
Eco57I CTGAAG 2 cut(s) 190, 327
EcoRII CCWGG 2 cut(s) 239, 571
Esp3I CGTCTC 1 cut(s) 924
FaeI CATG 2 cut(s) 488, 592
FaqI GGGAC 1 cut(s) 896
FatI CATG 2 cut(s) 484, 588
FbaI TGATCA 1 cut(s) 385
Fnu4HI GCNGC 2 cut(s) 543, 866
FokI GGATG 1 cut(s) 208
Fsp4HI GCNGC 2 cut(s) 543, 866
FspBI CTAG 1 cut(s) 988
GluI GCNGC 2 cut(s) 543, 866
GsuI CTGGAG 1 cut(s) 146
HaeIII GGCC 1 cut(s) 109
HgaI GACGC 1 cut(s) 906
Hin1II CATG 2 cut(s) 488, 592
HindIII AAGCTT 1 cut(s) 909
HinfI GANTC 4 cut(s) 272, 557, 644, 682
HphI GGTGA 2 cut(s) 395, 690
Hpy188I TCNGA 8 cut(s) 209, 237, 277, 327, 419, 606, 856, 979
Hpy188III TCNNGA 6 cut(s) 188, 529, 624, 667, 881, 941
HpyAV CCTTC 2 cut(s) 462, 825
HpyCH4IV ACGT 1 cut(s) 164
HpyF10VI GCNNNNNNNGC 2 cut(s) 115, 410
HpyF3I CTNAG 2 cut(s) 405, 561
HpySE526I ACGT 1 cut(s) 164
Hsp92II CATG 2 cut(s) 488, 592
Ksp22I TGATCA 1 cut(s) 385
Kzo9I GATC 1 cut(s) 385
LmnI GCTCC 2 cut(s) 127, 778
Lsp1109I GCAGC 2 cut(s) 554, 852
LweI GCATC 3 cut(s) 166, 504, 970
MaeI CTAG 1 cut(s) 988
MaeII ACGT 1 cut(s) 164
MaeIII GTNAC 2 cut(s) 536, 822
MalI GATC 1 cut(s) 387
MboI GATC 1 cut(s) 385
MboII GAAGA 3 cut(s) 290, 348, 691
MluCI AATT 5 cut(s) 100, 315, 431, 470, 898
MlyI GAGTC 1 cut(s) 638
MnlI CCTC 5 cut(s) 279, 413, 804, 956, 965
MspR9I CCNGG 2 cut(s) 241, 573
Mva1269I GAATGC 1 cut(s) 430
MvaI CCWGG 2 cut(s) 241, 573
MwoI GCNNNNNNNGC 2 cut(s) 115, 410
NdeII GATC 1 cut(s) 385
NlaIII CATG 2 cut(s) 488, 592
NmuCI GTSAC 1 cut(s) 822
PaqCI CACCTGC 1 cut(s) 26
PctI GAATGC 1 cut(s) 430
PfeI GAWTC 3 cut(s) 272, 557, 682
PfoI TCCNGGA 1 cut(s) 571
PkrI GCNGC 2 cut(s) 544, 867
PleI GAGTC 1 cut(s) 638
PpsI GAGTC 1 cut(s) 638
PshAI GACNNNNGTC 1 cut(s) 596
PsiI TTATAA 2 cut(s) 251, 876
Psp6I CCWGG 2 cut(s) 239, 571
PspGI CCWGG 2 cut(s) 239, 571
PspPI GGNCC 2 cut(s) 107, 449
PstNI CAGNNNCTG 1 cut(s) 610
SatI GCNGC 2 cut(s) 543, 866
Sau3AI GATC 1 cut(s) 385
Sau96I GGNCC 2 cut(s) 107, 449
SchI GAGTC 1 cut(s) 638
ScrFI CCNGG 2 cut(s) 241, 573
SfaNI GCATC 3 cut(s) 166, 504, 970
SinI GGWCC 1 cut(s) 449
SmlI CTYRAG 1 cut(s) 788
SmoI CTYRAG 1 cut(s) 788
Sse9I AATT 5 cut(s) 100, 315, 431, 470, 898
SsiI CCGC 1 cut(s) 903
SspI AATATT 1 cut(s) 268
SspMI CTAG 1 cut(s) 988
StyD4I CCNGG 2 cut(s) 239, 571
TaiI ACGT 1 cut(s) 167
TasI AATT 5 cut(s) 100, 315, 431, 470, 898
TfiI GAWTC 3 cut(s) 272, 557, 682
TseFI GTSAC 1 cut(s) 822
TseI GCWGC 2 cut(s) 542, 865
Tsp45I GTSAC 1 cut(s) 822
TspDTI ATGAA 6 cut(s) 381, 444, 464, 807, 911, 978
TspGWI ACGGA 1 cut(s) 656
VpaK11BI GGWCC 1 cut(s) 449
XspI CTAG 1 cut(s) 988
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.