Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0016252

Physical Location & Seq

Genomic Coordinates Reverse (-)

5010275 .. 5013037

Gene Structure 2763 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ36301

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGCAATGTCAGATTTTCTTTGAAATGGGTCACAGTGCAATCAAATGTTTGCGTAGGCATCACTATGGTATTCAACCACCAACTTGTGCAGCACCTAAAGCTTTGTCAGCTACCATCCCCACTCAACCAAAGCCACCCTCCATTGCTACTCAACCAAATAACAATGCTTTTCAATCGCAAGTCAAGCCTCTGCCATTTGTACATGCATCTCCATTATCAGTTCCTACTCACCCTCATTTGCAGCAAGCTCTTCTCAAGAAAATTGAAGCGTTGCCGACACCAGGCACATGCCTATTTCCTTCTACTCCGGACAAAAATATGATGAATTGTAGGCAGGCCTCGGCCTATGGAGCTATGGGGATCACTTTCCCTCATTTCCTAGTTGGAATATGCATTCTCACCTGCAATCTGATGTTCGTATCACTCCCATCAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

145

Amino Acids

15.75

Weight (kDa)

9.28

Isoelectric Point (pI)

47.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016252)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g06414 FvH4_6g09731 FvH4_7g15531
rosa_chinensis	RchiOBHm_Chr3g0453851 RchiOBHm_Chr4g0389911 RchiOBHm_Chr5g0017791 RchiOBHm_Chr7g0182071 RchiOBHm_Chr7g0243861
rosa_multiflora	Rmu_sc0000968.1_g000018 Rmu_sc0003076.1_g000010 Rmu_sc0004479.1_g000006 Rmu_sc0012468.1_g000001
rosa_roxburghii	Rroxscaffold_7G00208120
rosa_rugosa	Rorug06G0070100
rosa_samantha	Rh5CG142100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	410
Acc36I	ACCTGC	1 cut(s)	410
AccIII	TCCGGA	1 cut(s)	307
AclWI	GGATC	1 cut(s)	368
AfaI	GTAC	1 cut(s)	201
AfiI	CCNNNNNNNGG	1 cut(s)	281
AgsI	TTSAA	4 cut(s)	23, 74, 173, 266
AjnI	CCWGG	1 cut(s)	280
AluBI	AGCT	5 cut(s)	101, 110, 248, 353, 434
AluI	AGCT	5 cut(s)	101, 110, 248, 353, 434
AlwI	GGATC	1 cut(s)	368
Aor13HI	TCCGGA	1 cut(s)	307
AoxI	GGCC	2 cut(s)	336, 342
ApeKI	GCWGC	2 cut(s)	89, 241
AsuHPI	GGTGA	2 cut(s)	221, 391
BbvI	GCAGC	2 cut(s)	101, 253
BccI	CCATC	2 cut(s)	122, 436
BciT130I	CCWGG	1 cut(s)	282
BfaI	CTAG	1 cut(s)	380
BfuAI	ACCTGC	1 cut(s)	410
BisI	GCNGC	2 cut(s)	90, 242
BlsI	GCNGC	2 cut(s)	91, 243
Bme1390I	CCNGG	1 cut(s)	282
BmrFI	CCNGG	1 cut(s)	282
BmsI	GCATC	2 cut(s)	67, 215
BpuEI	CTTGAG	1 cut(s)	239
BsaJI	CCNNGG	1 cut(s)	339
BsaWI	WCCGGW	1 cut(s)	307
Bsc4I	CCNNNNNNNGG	1 cut(s)	281
Bse3DI	GCAATG	2 cut(s)	11, 141
BseAI	TCCGGA	1 cut(s)	307
BseBI	CCWGG	1 cut(s)	282
BseDI	CCNNGG	1 cut(s)	339
BseGI	GGATG	1 cut(s)	114
BseLI	CCNNNNNNNGG	1 cut(s)	281
BseMI	GCAATG	2 cut(s)	11, 141
BseXI	GCAGC	2 cut(s)	101, 253
BsgI	GTGCAG	1 cut(s)	108
BshFI	GGCC	2 cut(s)	338, 344
BsiSI	CCGG	1 cut(s)	308
BslI	CCNNNNNNNGG	1 cut(s)	281
BsmI	GAATGC	1 cut(s)	393
BsnI	GGCC	2 cut(s)	338, 344
Bsp13I	TCCGGA	1 cut(s)	307
Bsp1407I	TGTACA	1 cut(s)	199
Bsp143I	GATC	1 cut(s)	360
BspANI	GGCC	2 cut(s)	338, 344
BspEI	TCCGGA	1 cut(s)	307
BspMI	ACCTGC	1 cut(s)	410
BspPI	GGATC	1 cut(s)	368
BspQI	GCTCTTC	1 cut(s)	255
BsrDI	GCAATG	2 cut(s)	11, 141
BsrGI	TGTACA	1 cut(s)	199
BssECI	CCNNGG	1 cut(s)	339
BssMI	GATC	1 cut(s)	360
Bst2UI	CCWGG	1 cut(s)	282
Bst4CI	ACNGT	1 cut(s)	35
Bst6I	CTCTTC	1 cut(s)	255
BstAUI	TGTACA	1 cut(s)	199
BstC8I	GCNNGC	2 cut(s)	246, 336
BstF5I	GGATG	1 cut(s)	114
BstKTI	GATC	1 cut(s)	363
BstMBI	GATC	1 cut(s)	360
BstMWI	GCNNNNNNNGC	4 cut(s)	98, 107, 184, 350
BstNI	CCWGG	1 cut(s)	282
BstNSI	RCATGY	2 cut(s)	206, 291
BstSCI	CCNGG	1 cut(s)	280
BstV1I	GCAGC	2 cut(s)	101, 253
BsuRI	GGCC	2 cut(s)	338, 344
BtsCI	GGATG	1 cut(s)	114
BtsIMutI	CAGTG	1 cut(s)	40
BveI	ACCTGC	1 cut(s)	410
Cac8I	GCNNGC	2 cut(s)	246, 336
Csp6I	GTAC	1 cut(s)	200
CviAII	CATG	2 cut(s)	203, 288
CviJI	RGCY	9 cut(s)	101, 110, 133, 187, 248, 338, 344, 353, 434
CviKI_1	RGCY	9 cut(s)	101, 110, 133, 187, 248, 338, 344, 353, 434
CviQI	GTAC	1 cut(s)	200
DpnI	GATC	1 cut(s)	362
DpnII	GATC	1 cut(s)	360
Eam1104I	CTCTTC	1 cut(s)	255
EarI	CTCTTC	1 cut(s)	255
Eco147I	AGGCCT	1 cut(s)	338
EcoRII	CCWGG	1 cut(s)	280
EcoT22I	ATGCAT	2 cut(s)	208, 395
FaeI	CATG	2 cut(s)	206, 291
FaiI	YATR	7 cut(s)	66, 204, 289, 320, 348, 356, 391
FatI	CATG	2 cut(s)	202, 287
Fnu4HI	GCNGC	2 cut(s)	90, 242
FokI	GGATG	1 cut(s)	101
Fsp4HI	GCNGC	2 cut(s)	90, 242
FspBI	CTAG	1 cut(s)	380
GluI	GCNGC	2 cut(s)	90, 242
HaeIII	GGCC	2 cut(s)	338, 344
HapII	CCGG	1 cut(s)	308
Hin1II	CATG	2 cut(s)	206, 291
HindIII	AAGCTT	1 cut(s)	99
HpaII	CCGG	1 cut(s)	308
HphI	GGTGA	2 cut(s)	221, 391
Hpy188I	TCNGA	2 cut(s)	12, 411
Hpy188III	TCNNGA	2 cut(s)	256, 308
HpyAV	CCTTC	1 cut(s)	309
HpyCH4III	ACNGT	1 cut(s)	35
HpyCH4V	TGCA	7 cut(s)	4, 38, 89, 206, 241, 393, 405
HpyF10VI	GCNNNNNNNGC	4 cut(s)	98, 107, 184, 350
Hsp92II	CATG	2 cut(s)	206, 291
Kpn2I	TCCGGA	1 cut(s)	307
Kzo9I	GATC	1 cut(s)	360
LguI	GCTCTTC	1 cut(s)	255
LmnI	GCTCC	1 cut(s)	350
LpnPI	CCDG	5 cut(s)	267, 294, 320, 321, 415
Lsp1109I	GCAGC	2 cut(s)	101, 253
LweI	GCATC	2 cut(s)	67, 215
MaeI	CTAG	1 cut(s)	380
MaeIII	GTNAC	1 cut(s)	29
MalI	GATC	1 cut(s)	362
MboI	GATC	1 cut(s)	360
MboII	GAAGA	1 cut(s)	242
MluCI	AATT	2 cut(s)	261, 325
MmeI	TCCRAC	1 cut(s)	364
MnlI	CCTC	5 cut(s)	148, 198, 243, 349, 381
Mph1103I	ATGCAT	2 cut(s)	208, 395
MroI	TCCGGA	1 cut(s)	307
MslI	CAYNNNNRTG	1 cut(s)	63
MspI	CCGG	1 cut(s)	308
MspR9I	CCNGG	1 cut(s)	282
Mva1269I	GAATGC	1 cut(s)	393
MvaI	CCWGG	1 cut(s)	282
MwoI	GCNNNNNNNGC	4 cut(s)	98, 107, 184, 350
NdeII	GATC	1 cut(s)	360
NlaIII	CATG	2 cut(s)	206, 291
NmeAIII	GCCGAG	1 cut(s)	320
NmuCI	GTSAC	1 cut(s)	29
NsiI	ATGCAT	2 cut(s)	208, 395
NspI	RCATGY	2 cut(s)	206, 291
PaqCI	CACCTGC	1 cut(s)	410
PceI	AGGCCT	1 cut(s)	338
PciSI	GCTCTTC	1 cut(s)	255
PctI	GAATGC	1 cut(s)	393
PkrI	GCNGC	2 cut(s)	91, 243
Psp6I	CCWGG	1 cut(s)	280
PspGI	CCWGG	1 cut(s)	280
RsaI	GTAC	1 cut(s)	201
RsaNI	GTAC	1 cut(s)	200
RseI	CAYNNNNRTG	1 cut(s)	63
SapI	GCTCTTC	1 cut(s)	255
SatI	GCNGC	2 cut(s)	90, 242
Sau3AI	GATC	1 cut(s)	360
ScrFI	CCNGG	1 cut(s)	282
SetI	ASST	7 cut(s)	97, 103, 112, 250, 355, 404, 436
SfaNI	GCATC	2 cut(s)	67, 215
SmiMI	CAYNNNNRTG	1 cut(s)	63
SmlI	CTYRAG	1 cut(s)	254
SmoI	CTYRAG	1 cut(s)	254
Sse9I	AATT	2 cut(s)	261, 325
SseBI	AGGCCT	1 cut(s)	338
SspMI	CTAG	1 cut(s)	380
StuI	AGGCCT	1 cut(s)	338
StyD4I	CCNGG	1 cut(s)	280
TaaI	ACNGT	1 cut(s)	35
TasI	AATT	2 cut(s)	261, 325
TatI	WGTACW	1 cut(s)	199
TscAI	CASTG	1 cut(s)	40
TseFI	GTSAC	1 cut(s)	29
TseI	GCWGC	2 cut(s)	89, 241
Tsp45I	GTSAC	1 cut(s)	29
TspDTI	ATGAA	1 cut(s)	338
TspRI	CASTG	1 cut(s)	40
XceI	RCATGY	2 cut(s)	206, 291
XspI	CTAG	1 cut(s)	380
Zsp2I	ATGCAT	2 cut(s)	208, 395

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.