Rmu_sc0004479.1_g000006

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004479.1
OG0016252
Physical Location & Seq
Reverse (-)
20060 .. 20554
495 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004479.1_g000006.1.cds

Sequence Viewer

Length: 495 bp
atgaataaacaagttgttaccttgaagcctgaagatgacgagggtgtggacttgcaagagagaaatatggatccagaggatactgaatgtgagagtaccaactcaaaagatgctatgtctatcactgaagcaaggcaagtggttaataaaagttctgcaaatgaggacacgaagaagattcaggttggtgtatcacctaaagcgttgtctgcttccatctgcactcaaccaaagccaccctccactgctactgagccaaataacaactcttttcaatcacaagttgtcaagcctctaacaattacatctgcatacccattatcagttcctcctcaccctcatttgcagcaagctccactcaagaaaattgaagttttgcgaacaccaggaacttggctacttccttccactccggacagaaatctaatgcattgcagacatgcttgtgagtctacgaatttatggcaatcacttcctctcattcctcctggctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

164

Amino Acids

18.02

Weight (kDa)

5.79

Isoelectric Point (pI)

65.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 452
AccIII TCCGGA 1 cut(s) 412
AclWI GGATC 2 cut(s) 65, 78
AcsI RAATTY 1 cut(s) 457
AcuI CTGAAG 2 cut(s) 51, 147
AfaI GTAC 1 cut(s) 97
AgsI TTSAA 3 cut(s) 25, 275, 371
AjnI CCWGG 2 cut(s) 385, 487
AluBI AGCT 1 cut(s) 353
AluI AGCT 1 cut(s) 353
AlwI GGATC 2 cut(s) 65, 78
Aor13HI TCCGGA 1 cut(s) 412
ApeKI GCWGC 1 cut(s) 346
ApoI RAATTY 1 cut(s) 457
AsuHPI GGTGA 2 cut(s) 186, 326
BamHI GGATCC 1 cut(s) 70
BbvI GCAGC 1 cut(s) 358
BccI CCATC 1 cut(s) 224
BciT130I CCWGG 2 cut(s) 387, 489
BciVI GTATCC 1 cut(s) 73
BfuI GTATCC 1 cut(s) 73
BisI GCNGC 1 cut(s) 347
BlsI GCNGC 1 cut(s) 348
Bme1390I CCNGG 2 cut(s) 387, 489
BmiI GGNNCC 1 cut(s) 72
BmrFI CCNGG 2 cut(s) 387, 489
BmsI GCATC 1 cut(s) 100
BpuEI CTTGAG 1 cut(s) 344
BsaWI WCCGGW 1 cut(s) 412
Bse3DI GCAATG 1 cut(s) 430
BseAI TCCGGA 1 cut(s) 412
BseBI CCWGG 2 cut(s) 387, 489
BseMI GCAATG 1 cut(s) 430
BseMII CTCAG 1 cut(s) 243
BseRI GAGGAG 1 cut(s) 321
BseXI GCAGC 1 cut(s) 358
BsgI GTGCAG 1 cut(s) 205
BsiSI CCGG 1 cut(s) 413
Bsp13I TCCGGA 1 cut(s) 412
Bsp143I GATC 1 cut(s) 70
BspCNI CTCAG 1 cut(s) 244
BspEI TCCGGA 1 cut(s) 412
BspLI GGNNCC 1 cut(s) 72
BspPI GGATC 2 cut(s) 65, 78
BsrDI GCAATG 1 cut(s) 430
BssMI GATC 1 cut(s) 70
Bst2UI CCWGG 2 cut(s) 387, 489
BstC8I GCNNGC 1 cut(s) 351
BstDEI CTNAG 1 cut(s) 252
BstKTI GATC 1 cut(s) 73
BstMBI GATC 1 cut(s) 70
BstMWI GCNNNNNNNGC 1 cut(s) 209
BstNI CCWGG 2 cut(s) 387, 489
BstNSI RCATGY 1 cut(s) 443
BstSCI CCNGG 2 cut(s) 385, 487
BstV1I GCAGC 1 cut(s) 358
BstX2I RGATCY 1 cut(s) 70
BstXI CCANNNNNNTGG 1 cut(s) 393
BstYI RGATCY 1 cut(s) 70
BsuI GTATCC 1 cut(s) 73
BtsI GCAGTG 1 cut(s) 243
BtsIMutI CAGTG 2 cut(s) 123, 243
Cac8I GCNNGC 1 cut(s) 351
Csp6I GTAC 1 cut(s) 96
CspCI CAANNNNNGTGG 2 cut(s) 120, 155
CviAII CATG 1 cut(s) 440
CviJI RGCY 7 cut(s) 28, 235, 256, 292, 353, 397, 492
CviKI_1 RGCY 7 cut(s) 28, 235, 256, 292, 353, 397, 492
CviQI GTAC 1 cut(s) 96
DdeI CTNAG 1 cut(s) 252
DpnI GATC 1 cut(s) 72
DpnII GATC 1 cut(s) 70
Eco57I CTGAAG 2 cut(s) 51, 147
EcoRII CCWGG 2 cut(s) 385, 487
EcoT22I ATGCAT 1 cut(s) 432
FaeI CATG 1 cut(s) 443
FaiI YATR 5 cut(s) 68, 116, 313, 441, 463
FatI CATG 1 cut(s) 439
FblI GTMKAC 1 cut(s) 452
Fnu4HI GCNGC 1 cut(s) 347
Fsp4HI GCNGC 1 cut(s) 347
GluI GCNGC 1 cut(s) 347
HapII CCGG 1 cut(s) 413
Hin1II CATG 1 cut(s) 443
HinfI GANTC 2 cut(s) 178, 449
HpaII CCGG 1 cut(s) 413
HphI GGTGA 2 cut(s) 186, 326
Hpy166II GTNNAC 2 cut(s) 49, 453
Hpy188III TCNNGA 3 cut(s) 74, 361, 413
Hpy8I GTNNAC 2 cut(s) 49, 453
HpyAV CCTTC 1 cut(s) 414
HpyCH4V TGCA 7 cut(s) 55, 158, 222, 311, 346, 430, 435
HpyF10VI GCNNNNNNNGC 1 cut(s) 209
HpyF3I CTNAG 1 cut(s) 252
Hsp92II CATG 1 cut(s) 443
Kpn2I TCCGGA 1 cut(s) 412
Kzo9I GATC 1 cut(s) 70
LmnI GCTCC 1 cut(s) 358
LpnPI CCDG 7 cut(s) 42, 87, 167, 372, 399, 426, 474
Lsp1109I GCAGC 1 cut(s) 358
LweI GCATC 1 cut(s) 100
MaeIII GTNAC 1 cut(s) 16
MalI GATC 1 cut(s) 72
MboI GATC 1 cut(s) 70
MboII GAAGA 3 cut(s) 44, 184, 187
MflI RGATCY 1 cut(s) 70
MluCI AATT 3 cut(s) 300, 366, 457
MlyI GAGTC 1 cut(s) 458
Mph1103I ATGCAT 1 cut(s) 432
MroI TCCGGA 1 cut(s) 412
MseI TTAA 1 cut(s) 144
MslI CAYNNNNRTG 1 cut(s) 444
MspI CCGG 1 cut(s) 413
MspR9I CCNGG 2 cut(s) 387, 489
MvaI CCWGG 2 cut(s) 387, 489
MwoI GCNNNNNNNGC 1 cut(s) 209
NdeII GATC 1 cut(s) 70
NlaIII CATG 1 cut(s) 443
NlaIV GGNNCC 1 cut(s) 72
NsiI ATGCAT 1 cut(s) 432
NspI RCATGY 1 cut(s) 443
PfeI GAWTC 1 cut(s) 178
PkrI GCNGC 1 cut(s) 348
PleI GAGTC 1 cut(s) 457
PpsI GAGTC 1 cut(s) 457
Psp6I CCWGG 2 cut(s) 385, 487
PspGI CCWGG 2 cut(s) 385, 487
PspN4I GGNNCC 1 cut(s) 72
PsuI RGATCY 1 cut(s) 70
RsaI GTAC 1 cut(s) 97
RsaNI GTAC 1 cut(s) 96
RseI CAYNNNNRTG 1 cut(s) 444
SaqAI TTAA 1 cut(s) 144
SatI GCNGC 1 cut(s) 347
Sau3AI GATC 1 cut(s) 70
SchI GAGTC 1 cut(s) 458
ScrFI CCNGG 2 cut(s) 387, 489
SetI ASST 4 cut(s) 23, 186, 199, 355
SfaNI GCATC 1 cut(s) 100
SmiMI CAYNNNNRTG 1 cut(s) 444
SmlI CTYRAG 1 cut(s) 359
SmoI CTYRAG 1 cut(s) 359
Sse9I AATT 3 cut(s) 300, 366, 457
StyD4I CCNGG 2 cut(s) 385, 487
TasI AATT 3 cut(s) 300, 366, 457
TfiI GAWTC 1 cut(s) 178
Tru1I TTAA 1 cut(s) 144
Tru9I TTAA 1 cut(s) 144
TscAI CASTG 2 cut(s) 130, 250
TseI GCWGC 1 cut(s) 346
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 2 cut(s) 130, 250
XapI RAATTY 1 cut(s) 457
XceI RCATGY 1 cut(s) 443
XmiI GTMKAC 1 cut(s) 452
Zsp2I ATGCAT 1 cut(s) 432
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.