RchiOBHm_Chr7g0182071

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Forward (+)
3454234 .. 3454562
329 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ16240

Sequence Viewer

Length: 306 bp
ATGCCGGATAGTCAAGTTCTTCAATCTCCATATAATGGCCACAATGCAACAGAATGTTTGCGTAGTATTCAACCACCAAGATGTGCAGCACCTAAAGATTTGTCTGCTTCAATCTGCACTCAACCACATCCACCCTCCATTGCTACTCAGCCAAATAACAATTCTTCTCAATCACAAGTTGTCAAGCCTCATTTGCAGCAAGCTCTCCTCAAGAAAATTGAAATTTTGCAGACACCAAGAACTTGTAGGCAAGCTTGTGAGTCTACGAAATTATGGCAATCATTACCACTCATTTCTCCTGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

101

Amino Acids

11.05

Weight (kDa)

8.99

Isoelectric Point (pI)

100.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 35
AccI GTMKAC 1 cut(s) 263
AcoI YGGCCR 1 cut(s) 37
AcsI RAATTY 1 cut(s) 222
AfiI CCNNNNNNNGG 1 cut(s) 35
AgsI TTSAA 4 cut(s) 23, 71, 111, 221
AjnI CCWGG 1 cut(s) 298
AjuI GAANNNNNNNTTGG 2 cut(s) 145, 177
AluBI AGCT 2 cut(s) 203, 254
AluI AGCT 2 cut(s) 203, 254
AoxI GGCC 1 cut(s) 37
ApeKI GCWGC 2 cut(s) 86, 196
ApoI RAATTY 1 cut(s) 222
BalI TGGCCA 1 cut(s) 39
BbvI GCAGC 2 cut(s) 98, 208
BciT130I CCWGG 1 cut(s) 300
BisI GCNGC 2 cut(s) 87, 197
BlsI GCNGC 2 cut(s) 88, 198
Bme1390I CCNGG 1 cut(s) 300
BmrFI CCNGG 1 cut(s) 300
BpuEI CTTGAG 1 cut(s) 194
Bsc4I CCNNNNNNNGG 1 cut(s) 35
Bse3DI GCAATG 1 cut(s) 138
BseBI CCWGG 1 cut(s) 300
BseGI GGATG 1 cut(s) 127
BseLI CCNNNNNNNGG 1 cut(s) 35
BseMI GCAATG 1 cut(s) 138
BseMII CTCAG 1 cut(s) 161
BseRI GAGGAG 1 cut(s) 197
BseXI GCAGC 2 cut(s) 98, 208
BsgI GTGCAG 2 cut(s) 100, 105
BshFI GGCC 1 cut(s) 39
BsiSI CCGG 1 cut(s) 5
BslI CCNNNNNNNGG 1 cut(s) 35
BsnI GGCC 1 cut(s) 39
BspANI GGCC 1 cut(s) 39
BspCNI CTCAG 1 cut(s) 160
BsrDI GCAATG 1 cut(s) 138
Bst2UI CCWGG 1 cut(s) 300
BstC8I GCNNGC 2 cut(s) 201, 252
BstDEI CTNAG 1 cut(s) 147
BstF5I GGATG 1 cut(s) 127
BstMWI GCNNNNNNNGC 1 cut(s) 193
BstNI CCWGG 1 cut(s) 300
BstSCI CCNGG 1 cut(s) 298
BstV1I GCAGC 2 cut(s) 98, 208
BsuRI GGCC 1 cut(s) 39
BtsCI GGATG 1 cut(s) 127
Cac8I GCNNGC 2 cut(s) 201, 252
CviJI RGCY 5 cut(s) 39, 151, 187, 203, 254
CviKI_1 RGCY 5 cut(s) 39, 151, 187, 203, 254
DdeI CTNAG 1 cut(s) 147
EaeI YGGCCR 1 cut(s) 37
EcoRII CCWGG 1 cut(s) 298
FaiI YATR 3 cut(s) 31, 33, 274
FblI GTMKAC 1 cut(s) 263
Fnu4HI GCNGC 2 cut(s) 87, 197
FokI GGATG 1 cut(s) 114
Fsp4HI GCNGC 2 cut(s) 87, 197
GluI GCNGC 2 cut(s) 87, 197
HaeIII GGCC 1 cut(s) 39
HapII CCGG 1 cut(s) 5
HindIII AAGCTT 1 cut(s) 252
HinfI GANTC 1 cut(s) 260
HpaII CCGG 1 cut(s) 5
Hpy166II GTNNAC 1 cut(s) 264
Hpy188III TCNNGA 1 cut(s) 211
Hpy8I GTNNAC 1 cut(s) 264
HpyCH4V TGCA 5 cut(s) 47, 86, 117, 196, 229
HpyF10VI GCNNNNNNNGC 1 cut(s) 193
HpyF3I CTNAG 1 cut(s) 147
LpnPI CCDG 2 cut(s) 18, 285
Lsp1109I GCAGC 2 cut(s) 98, 208
MboII GAAGA 2 cut(s) 11, 156
MlsI TGGCCA 1 cut(s) 39
MluCI AATT 4 cut(s) 160, 216, 222, 269
MluNI TGGCCA 1 cut(s) 39
MlyI GAGTC 1 cut(s) 269
MnlI CCTC 3 cut(s) 145, 198, 218
Mox20I TGGCCA 1 cut(s) 39
MscI TGGCCA 1 cut(s) 39
MslI CAYNNNNRTG 1 cut(s) 79
Msp20I TGGCCA 1 cut(s) 39
MspI CCGG 1 cut(s) 5
MspR9I CCNGG 1 cut(s) 300
MvaI CCWGG 1 cut(s) 300
MwoI GCNNNNNNNGC 1 cut(s) 193
PflMI CCANNNNNTGG 1 cut(s) 35
PkrI GCNGC 2 cut(s) 88, 198
PleI GAGTC 1 cut(s) 268
PpsI GAGTC 1 cut(s) 268
Psp6I CCWGG 1 cut(s) 298
PspGI CCWGG 1 cut(s) 298
RseI CAYNNNNRTG 1 cut(s) 79
SatI GCNGC 2 cut(s) 87, 197
SchI GAGTC 1 cut(s) 269
ScrFI CCNGG 1 cut(s) 300
SetI ASST 3 cut(s) 94, 205, 256
SmiMI CAYNNNNRTG 1 cut(s) 79
SmlI CTYRAG 1 cut(s) 209
SmoI CTYRAG 1 cut(s) 209
Sse9I AATT 4 cut(s) 160, 216, 222, 269
StyD4I CCNGG 1 cut(s) 298
TasI AATT 4 cut(s) 160, 216, 222, 269
TseI GCWGC 2 cut(s) 86, 196
Van91I CCANNNNNTGG 1 cut(s) 35
XapI RAATTY 1 cut(s) 222
XmiI GTMKAC 1 cut(s) 263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.