gag-polypeptide of LTR copia-type
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_2g06414 FvH4_6g09731 FvH4_7g15531 |
| rosa_chinensis | RchiOBHm_Chr3g0453851 RchiOBHm_Chr4g0389911 RchiOBHm_Chr5g0017791 RchiOBHm_Chr7g0182071 RchiOBHm_Chr7g0243861 |
| rosa_multiflora | Rmu_sc0000968.1_g000018 Rmu_sc0003076.1_g000010 Rmu_sc0004479.1_g000006 Rmu_sc0012468.1_g000001 |
| rosa_roxburghii | Rroxscaffold_7G00208120 |
| rosa_rugosa | Rorug06G0070100 |
| rosa_samantha | Rh5CG142100 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 242, 459 |
| AclWI | GGATC | 4 cut(s) | 20, 1161, 1229, 1242 |
| AcoI | YGGCCR | 1 cut(s) | 492 |
| AcsI | RAATTY | 5 cut(s) | 40, 47, 299, 724, 1585 |
| AcuI | CTGAAG | 3 cut(s) | 875, 1215, 1311 |
| AdeI | CACNNNGTG | 1 cut(s) | 695 |
| AfaI | GTAC | 7 cut(s) | 483, 523, 556, 925, 994, 1120, 1261 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 437, 662, 716, 995, 1717 |
| AflII | CTTAAG | 1 cut(s) | 1742 |
| AflIII | ACRYGT | 1 cut(s) | 473 |
| AhlI | ACTAGT | 1 cut(s) | 518 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 851, 883 |
| AluBI | AGCT | 6 cut(s) | 152, 369, 766, 944, 1034, 1082 |
| AluI | AGCT | 6 cut(s) | 152, 369, 766, 944, 1034, 1082 |
| Alw21I | GWGCWC | 1 cut(s) | 514 |
| Alw26I | GTCTC | 5 cut(s) | 212, 704, 1133, 1565, 1685 |
| AlwI | GGATC | 4 cut(s) | 20, 1161, 1229, 1242 |
| AoxI | GGCC | 1 cut(s) | 492 |
| ApeKI | GCWGC | 3 cut(s) | 35, 1510, 1605 |
| ApoI | RAATTY | 5 cut(s) | 40, 47, 299, 724, 1585 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 377, 409 |
| AspLEI | GCGC | 2 cut(s) | 126, 1734 |
| AsuHPI | GGTGA | 3 cut(s) | 782, 1350, 1490 |
| BaeGI | GKGCMC | 1 cut(s) | 432 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1158, 1191 |
| BalI | TGGCCA | 1 cut(s) | 494 |
| BamHI | GGATCC | 1 cut(s) | 1234 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 910, 942 |
| Bbv12I | GWGCWC | 1 cut(s) | 514 |
| BbvI | GCAGC | 3 cut(s) | 47, 1522, 1617 |
| BccI | CCATC | 4 cut(s) | 667, 1051, 1388, 1775 |
| BciVI | GTATCC | 2 cut(s) | 1237, 1700 |
| BcoDI | GTCTC | 5 cut(s) | 212, 704, 1133, 1565, 1685 |
| BcuI | ACTAGT | 1 cut(s) | 518 |
| BfaI | CTAG | 4 cut(s) | 231, 519, 693, 1779 |
| BfrI | CTTAAG | 1 cut(s) | 1742 |
| BfuI | GTATCC | 2 cut(s) | 1237, 1700 |
| BisI | GCNGC | 3 cut(s) | 36, 1511, 1606 |
| BlsI | GCNGC | 3 cut(s) | 37, 1512, 1607 |
| BmcAI | AGTACT | 1 cut(s) | 523 |
| BmiI | GGNNCC | 1 cut(s) | 1236 |
| BmsI | GCATC | 4 cut(s) | 632, 656, 1028, 1264 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1580 |
| BpuEI | CTTGAG | 2 cut(s) | 1135, 1507 |
| BsaBI | GATNNNNATC | 2 cut(s) | 910, 1152 |
| BsaI | GGTCTC | 2 cut(s) | 212, 704 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 508, 538 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 437, 662, 716, 995, 1717 |
| Bse1I | ACTGG | 6 cut(s) | 501, 536, 754, 832, 1000, 1702 |
| Bse3DI | GCAATG | 4 cut(s) | 591, 907, 969, 1093 |
| Bse8I | GATNNNNATC | 2 cut(s) | 910, 1152 |
| BseGI | GGATG | 4 cut(s) | 328, 671, 1153, 1767 |
| BseJI | GATNNNNATC | 2 cut(s) | 910, 1152 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 437, 662, 716, 995, 1717 |
| BseMI | GCAATG | 4 cut(s) | 591, 907, 969, 1093 |
| BseMII | CTCAG | 3 cut(s) | 1080, 1407, 1594 |
| BseNI | ACTGG | 6 cut(s) | 501, 536, 754, 832, 1000, 1702 |
| BseRI | GAGGAG | 1 cut(s) | 1485 |
| BseSI | GKGCMC | 1 cut(s) | 432 |
| BseXI | GCAGC | 3 cut(s) | 47, 1522, 1617 |
| BsgI | GTGCAG | 3 cut(s) | 117, 1369, 1722 |
| BshFI | GGCC | 1 cut(s) | 494 |
| BsiHKAI | GWGCWC | 1 cut(s) | 514 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 437, 662, 716, 995, 1717 |
| BsmAI | GTCTC | 5 cut(s) | 212, 704, 1133, 1565, 1685 |
| BsnI | GGCC | 1 cut(s) | 494 |
| Bso31I | GGTCTC | 2 cut(s) | 212, 704 |
| Bsp1286I | GDGCHC | 2 cut(s) | 432, 514 |
| Bsp1407I | TGTACA | 1 cut(s) | 554 |
| Bsp143I | GATC | 5 cut(s) | 12, 142, 175, 1153, 1234 |
| BspANI | GGCC | 1 cut(s) | 494 |
| BspCNI | CTCAG | 3 cut(s) | 1079, 1408, 1593 |
| BspLI | GGNNCC | 1 cut(s) | 1236 |
| BspPI | GGATC | 4 cut(s) | 20, 1161, 1229, 1242 |
| BspTI | CTTAAG | 1 cut(s) | 1742 |
| BspTNI | GGTCTC | 2 cut(s) | 212, 704 |
| BsrDI | GCAATG | 4 cut(s) | 591, 907, 969, 1093 |
| BsrGI | TGTACA | 1 cut(s) | 554 |
| BsrI | ACTGG | 6 cut(s) | 501, 536, 754, 832, 1000, 1702 |
| BssMI | GATC | 5 cut(s) | 12, 142, 175, 1153, 1234 |
| Bst4CI | ACNGT | 5 cut(s) | 136, 352, 427, 564, 863 |
| Bst6I | CTCTTC | 1 cut(s) | 1563 |
| BstAFI | CTTAAG | 1 cut(s) | 1742 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 652, 797 |
| BstAUI | TGTACA | 1 cut(s) | 554 |
| BstC8I | GCNNGC | 1 cut(s) | 1084 |
| BstDEI | CTNAG | 3 cut(s) | 1066, 1416, 1580 |
| BstF5I | GGATG | 4 cut(s) | 328, 671, 1153, 1767 |
| BstHHI | GCGC | 2 cut(s) | 126, 1734 |
| BstKTI | GATC | 5 cut(s) | 15, 145, 178, 1156, 1237 |
| BstMAI | GTCTC | 5 cut(s) | 212, 704, 1133, 1565, 1685 |
| BstMBI | GATC | 5 cut(s) | 12, 142, 175, 1153, 1234 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 652, 797, 1373, 1614 |
| BstNSI | RCATGY | 1 cut(s) | 477 |
| BstSLI | GKGCMC | 1 cut(s) | 432 |
| BstV1I | GCAGC | 3 cut(s) | 47, 1522, 1617 |
| BstX2I | RGATCY | 1 cut(s) | 1234 |
| BstYI | RGATCY | 1 cut(s) | 1234 |
| BsuI | GTATCC | 2 cut(s) | 1237, 1700 |
| BsuRI | GGCC | 1 cut(s) | 494 |
| BtsCI | GGATG | 4 cut(s) | 328, 671, 1153, 1767 |
| BtsI | GCAGTG | 1 cut(s) | 1407 |
| BtsIMutI | CAGTG | 3 cut(s) | 514, 1287, 1407 |
| Cac8I | GCNNGC | 1 cut(s) | 1084 |
| CfoI | GCGC | 2 cut(s) | 126, 1734 |
| Csp6I | GTAC | 7 cut(s) | 482, 522, 555, 924, 993, 1119, 1260 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1284, 1319 |
| CviAII | CATG | 7 cut(s) | 265, 474, 479, 607, 670, 788, 1157 |
| CviQI | GTAC | 7 cut(s) | 482, 522, 555, 924, 993, 1119, 1260 |
| DdeI | CTNAG | 3 cut(s) | 1066, 1416, 1580 |
| DpnI | GATC | 5 cut(s) | 14, 144, 177, 1155, 1236 |
| DpnII | GATC | 5 cut(s) | 12, 142, 175, 1153, 1234 |
| DraIII | CACNNNGTG | 1 cut(s) | 695 |
| EaeI | YGGCCR | 1 cut(s) | 492 |
| Eam1104I | CTCTTC | 1 cut(s) | 1563 |
| EarI | CTCTTC | 1 cut(s) | 1563 |
| Eco31I | GGTCTC | 2 cut(s) | 212, 704 |
| Eco57I | CTGAAG | 3 cut(s) | 875, 1215, 1311 |
| EcoT22I | ATGCAT | 1 cut(s) | 671 |
| FaeI | CATG | 7 cut(s) | 268, 477, 482, 610, 673, 791, 1160 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1661, 1693 |
| FatI | CATG | 7 cut(s) | 264, 473, 478, 606, 669, 787, 1156 |
| Fnu4HI | GCNGC | 3 cut(s) | 36, 1511, 1606 |
| FokI | GGATG | 4 cut(s) | 315, 678, 1160, 1754 |
| Fsp4HI | GCNGC | 3 cut(s) | 36, 1511, 1606 |
| FspBI | CTAG | 4 cut(s) | 231, 519, 693, 1779 |
| GlaI | GCGC | 2 cut(s) | 125, 1733 |
| GluI | GCNGC | 3 cut(s) | 36, 1511, 1606 |
| HaeIII | GGCC | 1 cut(s) | 494 |
| HhaI | GCGC | 2 cut(s) | 126, 1734 |
| Hin1II | CATG | 7 cut(s) | 268, 477, 482, 610, 673, 791, 1160 |
| Hin6I | GCGC | 2 cut(s) | 124, 1732 |
| HinP1I | GCGC | 2 cut(s) | 124, 1732 |
| HincII | GTYRAC | 1 cut(s) | 589 |
| HindII | GTYRAC | 1 cut(s) | 589 |
| HindIII | AAGCTT | 1 cut(s) | 942 |
| HinfI | GANTC | 8 cut(s) | 101, 196, 386, 706, 828, 1126, 1141, 1342 |
| HphI | GGTGA | 3 cut(s) | 782, 1350, 1490 |
| Hpy166II | GTNNAC | 3 cut(s) | 557, 589, 1213 |
| Hpy188I | TCNGA | 5 cut(s) | 46, 89, 175, 1621, 1724 |
| Hpy188III | TCNNGA | 9 cut(s) | 179, 703, 1094, 1145, 1238, 1524, 1582, 1651, 1760 |
| Hpy8I | GTNNAC | 3 cut(s) | 557, 589, 1213 |
| HpyAV | CCTTC | 1 cut(s) | 1035 |
| HpyCH4III | ACNGT | 5 cut(s) | 136, 352, 427, 564, 863 |
| HpyCH4IV | ACGT | 1 cut(s) | 436 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 652, 797, 1373, 1614 |
| HpyF3I | CTNAG | 3 cut(s) | 1066, 1416, 1580 |
| HpySE526I | ACGT | 1 cut(s) | 436 |
| Hsp92II | CATG | 7 cut(s) | 268, 477, 482, 610, 673, 791, 1160 |
| HspAI | GCGC | 2 cut(s) | 124, 1732 |
| Kzo9I | GATC | 5 cut(s) | 12, 142, 175, 1153, 1234 |
| LmnI | GCTCC | 1 cut(s) | 1622 |
| Lsp1109I | GCAGC | 3 cut(s) | 47, 1522, 1617 |
| LweI | GCATC | 4 cut(s) | 632, 656, 1028, 1264 |
| MaeI | CTAG | 4 cut(s) | 231, 519, 693, 1779 |
| MaeII | ACGT | 1 cut(s) | 436 |
| MaeIII | GTNAC | 7 cut(s) | 224, 538, 730, 770, 863, 1180, 1658 |
| MalI | GATC | 5 cut(s) | 14, 144, 177, 1155, 1236 |
| MboI | GATC | 5 cut(s) | 12, 142, 175, 1153, 1234 |
| MboII | GAAGA | 6 cut(s) | 837, 1066, 1208, 1348, 1351, 1580 |
| MflI | RGATCY | 1 cut(s) | 1234 |
| MhlI | GDGCHC | 2 cut(s) | 432, 514 |
| MlsI | TGGCCA | 1 cut(s) | 494 |
| MluNI | TGGCCA | 1 cut(s) | 494 |
| MlyI | GAGTC | 2 cut(s) | 380, 1135 |
| Mox20I | TGGCCA | 1 cut(s) | 494 |
| Mph1103I | ATGCAT | 1 cut(s) | 671 |
| MscI | TGGCCA | 1 cut(s) | 494 |
| MseI | TTAA | 8 cut(s) | 65, 186, 275, 344, 951, 1308, 1589, 1743 |
| MslI | CAYNNNNRTG | 1 cut(s) | 786 |
| Msp20I | TGGCCA | 1 cut(s) | 494 |
| MspCI | CTTAAG | 1 cut(s) | 1742 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 652, 797, 1373, 1614 |
| NdeII | GATC | 5 cut(s) | 12, 142, 175, 1153, 1234 |
| NlaIII | CATG | 7 cut(s) | 268, 477, 482, 610, 673, 791, 1160 |
| NlaIV | GGNNCC | 1 cut(s) | 1236 |
| NmuCI | GTSAC | 2 cut(s) | 224, 770 |
| NsiI | ATGCAT | 1 cut(s) | 671 |
| NspI | RCATGY | 1 cut(s) | 477 |
| PciI | ACATGT | 1 cut(s) | 473 |
| PfeI | GAWTC | 6 cut(s) | 101, 196, 706, 828, 1126, 1342 |
| PkrI | GCNGC | 3 cut(s) | 37, 1512, 1607 |
| PleI | GAGTC | 2 cut(s) | 380, 1135 |
| PpsI | GAGTC | 2 cut(s) | 380, 1135 |
| PscI | ACATGT | 1 cut(s) | 473 |
| PsiI | TTATAA | 2 cut(s) | 242, 459 |
| PspN4I | GGNNCC | 1 cut(s) | 1236 |
| PsuI | RGATCY | 1 cut(s) | 1234 |
| RsaI | GTAC | 7 cut(s) | 483, 523, 556, 925, 994, 1120, 1261 |
| RsaNI | GTAC | 7 cut(s) | 482, 522, 555, 924, 993, 1119, 1260 |
| RseI | CAYNNNNRTG | 1 cut(s) | 786 |
| SaqAI | TTAA | 8 cut(s) | 65, 186, 275, 344, 951, 1308, 1589, 1743 |
| SatI | GCNGC | 3 cut(s) | 36, 1511, 1606 |
| Sau3AI | GATC | 5 cut(s) | 12, 142, 175, 1153, 1234 |
| ScaI | AGTACT | 1 cut(s) | 523 |
| SchI | GAGTC | 2 cut(s) | 380, 1135 |
| SduI | GDGCHC | 2 cut(s) | 432, 514 |
| SfaNI | GCATC | 4 cut(s) | 632, 656, 1028, 1264 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 786 |
| SmlI | CTYRAG | 3 cut(s) | 1114, 1522, 1742 |
| SmoI | CTYRAG | 3 cut(s) | 1114, 1522, 1742 |
| SpeI | ACTAGT | 1 cut(s) | 518 |
| SspMI | CTAG | 4 cut(s) | 231, 519, 693, 1779 |
| TaaI | ACNGT | 5 cut(s) | 136, 352, 427, 564, 863 |
| TaiI | ACGT | 1 cut(s) | 439 |
| TaqI | TCGA | 2 cut(s) | 104, 626 |
| TatI | WGTACW | 3 cut(s) | 521, 554, 1118 |
| TfiI | GAWTC | 6 cut(s) | 101, 196, 706, 828, 1126, 1342 |
| Tru1I | TTAA | 8 cut(s) | 65, 186, 275, 344, 951, 1308, 1589, 1743 |
| Tru9I | TTAA | 8 cut(s) | 65, 186, 275, 344, 951, 1308, 1589, 1743 |
| TscAI | CASTG | 3 cut(s) | 514, 1294, 1414 |
| TseFI | GTSAC | 2 cut(s) | 224, 770 |
| TseI | GCWGC | 3 cut(s) | 35, 1510, 1605 |
| Tsp45I | GTSAC | 2 cut(s) | 224, 770 |
| TspDTI | ATGAA | 7 cut(s) | 393, 767, 859, 936, 983, 1017, 1067 |
| TspGWI | ACGGA | 1 cut(s) | 678 |
| TspRI | CASTG | 3 cut(s) | 514, 1294, 1414 |
| Vha464I | CTTAAG | 1 cut(s) | 1742 |
| XapI | RAATTY | 5 cut(s) | 40, 47, 299, 724, 1585 |
| XceI | RCATGY | 1 cut(s) | 477 |
| XspI | CTAG | 4 cut(s) | 231, 519, 693, 1779 |
| ZrmI | AGTACT | 1 cut(s) | 523 |
| Zsp2I | ATGCAT | 1 cut(s) | 671 |