Rroxscaffold_7G00208120

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Forward (+)
58130900 .. 58138874
7975 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_7G00208120.1

Sequence Viewer

Length: 339 bp
ATGTGTTTTGCTGCAATAAATCCTACTTGTAACAGTTATGTTGTTGGTCAACAAAATGGTCATGGTGTTATGCAACAAAGTGGTATTGGGATGCAACAAAATGGAGGCTTTTCTCAAAATGGAAATTCTTTTCAACACAATGGTGGATTTACAAATTACATTGGTGGTTTTAATCCAGCAAATTGCAATCACAGCACATATGGAGGAGCTTTTCAATACAATGATGATGGCTGCAATTTCAACCAAGGCTCTACGGATAACAATGGATACTTTATCAACTTTGTATCTAATACACCAAATGGTATCATGCTCCTCCGGAGTGCACCAGCTAGTGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

112

Amino Acids

11.88

Weight (kDa)

5.69

Isoelectric Point (pI)

15.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 315
AcsI RAATTY 1 cut(s) 124
AgsI TTSAA 3 cut(s) 134, 215, 241
AleI CACNNNNGTG 1 cut(s) 141
AluBI AGCT 2 cut(s) 209, 329
AluI AGCT 2 cut(s) 209, 329
Alw21I GWGCWC 1 cut(s) 325
Alw44I GTGCAC 1 cut(s) 321
Aor13HI TCCGGA 1 cut(s) 315
ApaLI GTGCAC 1 cut(s) 321
ApeKI GCWGC 2 cut(s) 11, 231
ApoI RAATTY 1 cut(s) 124
BaeGI GKGCMC 1 cut(s) 325
Bbv12I GWGCWC 1 cut(s) 325
BbvI GCAGC 1 cut(s) 218
BccI CCATC 1 cut(s) 221
BciVI GTATCC 1 cut(s) 260
BfaI CTAG 1 cut(s) 330
BfuI GTATCC 1 cut(s) 260
BisI GCNGC 2 cut(s) 12, 232
BlsI GCNGC 2 cut(s) 13, 233
BmsI GCATC 1 cut(s) 81
BsaJI CCNNGG 1 cut(s) 244
BsaWI WCCGGW 1 cut(s) 315
BseAI TCCGGA 1 cut(s) 315
BseDI CCNNGG 1 cut(s) 244
BseGI GGATG 1 cut(s) 96
BseRI GAGGAG 2 cut(s) 219, 302
BseSI GKGCMC 1 cut(s) 325
BseXI GCAGC 1 cut(s) 218
BsiHKAI GWGCWC 1 cut(s) 325
BsiSI CCGG 1 cut(s) 316
Bsp1286I GDGCHC 1 cut(s) 325
Bsp13I TCCGGA 1 cut(s) 315
BspEI TCCGGA 1 cut(s) 315
BssECI CCNNGG 1 cut(s) 244
BssT1I CCWWGG 1 cut(s) 244
Bst4CI ACNGT 1 cut(s) 35
BstF5I GGATG 1 cut(s) 96
BstMWI GCNNNNNNNGC 1 cut(s) 192
BstSLI GKGCMC 1 cut(s) 325
BstV1I GCAGC 1 cut(s) 218
BsuI GTATCC 1 cut(s) 260
BtsCI GGATG 1 cut(s) 96
CviAII CATG 2 cut(s) 62, 307
CviJI RGCY 5 cut(s) 108, 209, 231, 249, 329
CviKI_1 RGCY 5 cut(s) 108, 209, 231, 249, 329
Eco130I CCWWGG 1 cut(s) 244
EcoT14I CCWWGG 1 cut(s) 244
ErhI CCWWGG 1 cut(s) 244
FaeI CATG 2 cut(s) 65, 310
FaiI YATR 6 cut(s) 39, 63, 71, 199, 201, 308
FatI CATG 2 cut(s) 61, 306
FauNDI CATATG 1 cut(s) 199
Fnu4HI GCNGC 2 cut(s) 12, 232
FokI GGATG 1 cut(s) 103
Fsp4HI GCNGC 2 cut(s) 12, 232
FspBI CTAG 1 cut(s) 330
GluI GCNGC 2 cut(s) 12, 232
HapII CCGG 1 cut(s) 316
Hin1II CATG 2 cut(s) 65, 310
HincII GTYRAC 1 cut(s) 50
HindII GTYRAC 1 cut(s) 50
HpaII CCGG 1 cut(s) 316
Hpy166II GTNNAC 2 cut(s) 50, 323
Hpy188III TCNNGA 1 cut(s) 316
Hpy8I GTNNAC 2 cut(s) 50, 323
HpyCH4III ACNGT 1 cut(s) 35
HpyCH4V TGCA 6 cut(s) 14, 73, 94, 186, 234, 323
HpyF10VI GCNNNNNNNGC 1 cut(s) 192
Hsp92II CATG 2 cut(s) 65, 310
Kpn2I TCCGGA 1 cut(s) 315
LmnI GCTCC 2 cut(s) 206, 315
LpnPI CCDG 2 cut(s) 189, 329
Lsp1109I GCAGC 1 cut(s) 218
LweI GCATC 1 cut(s) 81
MaeI CTAG 1 cut(s) 330
MaeIII GTNAC 1 cut(s) 29
MhlI GDGCHC 1 cut(s) 325
MluCI AATT 4 cut(s) 124, 154, 181, 235
MnlI CCTC 3 cut(s) 98, 197, 323
MroI TCCGGA 1 cut(s) 315
MseI TTAA 1 cut(s) 171
MslI CAYNNNNRTG 1 cut(s) 141
MspI CCGG 1 cut(s) 316
MwoI GCNNNNNNNGC 1 cut(s) 192
NdeI CATATG 1 cut(s) 199
NlaIII CATG 2 cut(s) 65, 310
OliI CACNNNNGTG 1 cut(s) 141
PkrI GCNGC 2 cut(s) 13, 233
RseI CAYNNNNRTG 1 cut(s) 141
SaqAI TTAA 1 cut(s) 171
SatI GCNGC 2 cut(s) 12, 232
SduI GDGCHC 1 cut(s) 325
SetI ASST 2 cut(s) 211, 331
SfaNI GCATC 1 cut(s) 81
SgeI CNNG 6 cut(s) 39, 74, 188, 257, 319, 328
SmiMI CAYNNNNRTG 1 cut(s) 141
Sse9I AATT 4 cut(s) 124, 154, 181, 235
SspMI CTAG 1 cut(s) 330
StyI CCWWGG 1 cut(s) 244
TaaI ACNGT 1 cut(s) 35
TasI AATT 4 cut(s) 124, 154, 181, 235
Tru1I TTAA 1 cut(s) 171
Tru9I TTAA 1 cut(s) 171
TseI GCWGC 2 cut(s) 11, 231
TspGWI ACGGA 1 cut(s) 269
VneI GTGCAC 1 cut(s) 321
XapI RAATTY 1 cut(s) 124
XspI CTAG 1 cut(s) 330
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.