FvH4_6g09731

No description available

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
5799397 .. 5800095
699 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g09731.t1

Sequence Viewer

Length: 603 bp
ATGGAGGATATTCATATAACAATGGAGCTTACAAATGCTATTAGAGAAACCCACAACAACAAGGTGGACCTTGTAGCTCTACTGTTAAATGTCAGATTTGGAAGAAACCAGACCAAACTACAGAAATCTACTAATAAGCTGACCTCAGATGCTCAGACTCTCCAAAATTGGTCAGGAGTGGACAACAAGGTTGTTTCTGAAATGGCAGGTTCAATTGTTTCTAAGAGTTCTGCAAGTGAGAACACAACTAATATTCAGGTGGGAGGAACACCTAAAGCTCTGTTTGCATTCATTTGCAATCAACCAAAGCCACACTCTAGTACTACTCAACCAGATAACAGTACTTCTCAGTCACAAGTCGAGCGATCAATTCCCACTCACCCTCATTTGAAGCAAACTCTTCGTAATGAGTTTGAAGCTTTGCCGATACCAGGTACTTGGCTAGCTACCTTTACTCCAAACAGAGATTTTGTGAACTATAAGCAAGCCTCTCATTCTATGAAGCTATGGTGGTCGCTTTTCGTTATTCTCATAACCAAGGAATCTTTACTGAAAACTAGTTCTTGCATCCCAAGCACTAGTTTGAGGGATCCCAAGCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

201

Amino Acids

22.36

Weight (kDa)

9.33

Isoelectric Point (pI)

37.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 197
AclWI GGATC 2 cut(s) 584, 597
AfaI GTAC 3 cut(s) 322, 343, 436
AfiI CCNNNNNNNGG 1 cut(s) 431
AgsI TTSAA 3 cut(s) 213, 391, 416
AhlI ACTAGT 2 cut(s) 557, 578
AjnI CCWGG 1 cut(s) 430
AluBI AGCT 7 cut(s) 28, 77, 139, 278, 419, 446, 505
AluI AGCT 7 cut(s) 28, 77, 139, 278, 419, 446, 505
AlwI GGATC 2 cut(s) 584, 597
AspS9I GGNCC 1 cut(s) 67
AsuHPI GGTGA 1 cut(s) 371
AsuNHI GCTAGC 1 cut(s) 442
AvaII GGWCC 1 cut(s) 67
BamHI GGATCC 1 cut(s) 589
BcgI CGANNNNNNTGC 2 cut(s) 383, 417
BciT130I CCWGG 1 cut(s) 432
BcuI ACTAGT 2 cut(s) 557, 578
BfaI CTAG 5 cut(s) 318, 443, 558, 579, 601
BfmI CTRYAG 1 cut(s) 119
BfuAI ACCTGC 1 cut(s) 197
BmcAI AGTACT 2 cut(s) 322, 343
Bme1390I CCNGG 1 cut(s) 432
Bme18I GGWCC 1 cut(s) 67
BmgT120I GGNCC 1 cut(s) 67
BmiI GGNNCC 1 cut(s) 591
BmrFI CCNGG 1 cut(s) 432
BmsI GCATC 2 cut(s) 139, 576
BmtI GCTAGC 1 cut(s) 446
BsaJI CCNNGG 1 cut(s) 537
BsaXI ACNNNNNCTCC 2 cut(s) 439, 469
Bsc4I CCNNNNNNNGG 1 cut(s) 431
BseBI CCWGG 1 cut(s) 432
BseDI CCNNGG 1 cut(s) 537
BseGI GGATG 1 cut(s) 567
BseLI CCNNNNNNNGG 1 cut(s) 431
BseMII CTCAG 3 cut(s) 159, 167, 362
BslI CCNNNNNNNGG 1 cut(s) 431
BsmI GAATGC 1 cut(s) 287
Bsp143I GATC 2 cut(s) 365, 589
BspCNI CTCAG 3 cut(s) 158, 166, 361
BspLI GGNNCC 1 cut(s) 591
BspMI ACCTGC 1 cut(s) 197
BspOI GCTAGC 1 cut(s) 446
BspPI GGATC 2 cut(s) 584, 597
BssECI CCNNGG 1 cut(s) 537
BssMI GATC 2 cut(s) 365, 589
BssT1I CCWWGG 1 cut(s) 537
Bst2UI CCWGG 1 cut(s) 432
Bst4CI ACNGT 2 cut(s) 84, 341
Bst6I CTCTTC 1 cut(s) 405
BstC8I GCNNGC 2 cut(s) 444, 486
BstDEI CTNAG 4 cut(s) 145, 153, 222, 348
BstF5I GGATG 1 cut(s) 567
BstKTI GATC 2 cut(s) 368, 592
BstMBI GATC 2 cut(s) 365, 589
BstMWI GCNNNNNNNGC 2 cut(s) 284, 573
BstNI CCWGG 1 cut(s) 432
BstSCI CCNGG 1 cut(s) 430
BstSFI CTRYAG 1 cut(s) 119
BstX2I RGATCY 1 cut(s) 589
BstXI CCANNNNNNTGG 1 cut(s) 438
BstYI RGATCY 1 cut(s) 589
BtsCI GGATG 1 cut(s) 567
BveI ACCTGC 1 cut(s) 197
Cac8I GCNNGC 2 cut(s) 444, 486
Cfr13I GGNCC 1 cut(s) 67
CsiI ACCWGGT 1 cut(s) 430
Csp6I GTAC 3 cut(s) 321, 342, 435
CviQI GTAC 3 cut(s) 321, 342, 435
DdeI CTNAG 4 cut(s) 145, 153, 222, 348
DpnI GATC 2 cut(s) 367, 591
DpnII GATC 2 cut(s) 365, 589
Eam1104I CTCTTC 1 cut(s) 405
EarI CTCTTC 1 cut(s) 405
Eco130I CCWWGG 1 cut(s) 537
Eco47I GGWCC 1 cut(s) 67
EcoRII CCWGG 1 cut(s) 430
EcoT14I CCWWGG 1 cut(s) 537
ErhI CCWWGG 1 cut(s) 537
FaiI YATR 6 cut(s) 15, 17, 480, 500, 508, 533
FokI GGATG 1 cut(s) 554
FspBI CTAG 5 cut(s) 318, 443, 558, 579, 601
HindIII AAGCTT 1 cut(s) 417
HinfI GANTC 2 cut(s) 157, 542
HphI GGTGA 1 cut(s) 371
Hpy166II GTNNAC 3 cut(s) 67, 181, 475
Hpy188I TCNGA 4 cut(s) 95, 148, 156, 199
Hpy188III TCNNGA 1 cut(s) 174
Hpy8I GTNNAC 3 cut(s) 67, 181, 475
HpyCH4III ACNGT 2 cut(s) 84, 341
HpyCH4V TGCA 4 cut(s) 233, 287, 297, 567
HpyF10VI GCNNNNNNNGC 2 cut(s) 284, 573
HpyF3I CTNAG 4 cut(s) 145, 153, 222, 348
Kzo9I GATC 2 cut(s) 365, 589
LmnI GCTCC 1 cut(s) 25
LpnPI CCDG 7 cut(s) 122, 159, 192, 242, 345, 417, 444
LweI GCATC 2 cut(s) 139, 576
MabI ACCWGGT 1 cut(s) 430
MaeI CTAG 5 cut(s) 318, 443, 558, 579, 601
MaeIII GTNAC 1 cut(s) 351
MalI GATC 2 cut(s) 367, 591
MboI GATC 2 cut(s) 365, 589
MboII GAAGA 2 cut(s) 114, 392
MfeI CAATTG 1 cut(s) 213
MflI RGATCY 1 cut(s) 589
MluCI AATT 3 cut(s) 166, 213, 369
MlyI GAGTC 1 cut(s) 151
MnlI CCTC 5 cut(s) 154, 257, 393, 499, 579
MseI TTAA 1 cut(s) 86
MspR9I CCNGG 1 cut(s) 432
MunI CAATTG 1 cut(s) 213
Mva1269I GAATGC 1 cut(s) 287
MvaI CCWGG 1 cut(s) 432
MwoI GCNNNNNNNGC 2 cut(s) 284, 573
NdeII GATC 2 cut(s) 365, 589
NheI GCTAGC 1 cut(s) 442
NlaIV GGNNCC 1 cut(s) 591
NmuCI GTSAC 1 cut(s) 351
PctI GAATGC 1 cut(s) 287
PfeI GAWTC 1 cut(s) 542
PleI GAGTC 1 cut(s) 151
PpsI GAGTC 1 cut(s) 151
Psp6I CCWGG 1 cut(s) 430
PspGI CCWGG 1 cut(s) 430
PspN4I GGNNCC 1 cut(s) 591
PspPI GGNCC 1 cut(s) 67
PsuI RGATCY 1 cut(s) 589
RsaI GTAC 3 cut(s) 322, 343, 436
RsaNI GTAC 3 cut(s) 321, 342, 435
SaqAI TTAA 1 cut(s) 86
Sau3AI GATC 2 cut(s) 365, 589
Sau96I GGNCC 1 cut(s) 67
ScaI AGTACT 2 cut(s) 322, 343
SchI GAGTC 1 cut(s) 151
ScrFI CCNGG 1 cut(s) 432
SexAI ACCWGGT 1 cut(s) 430
SfaNI GCATC 2 cut(s) 139, 576
SfcI CTRYAG 1 cut(s) 119
SinI GGWCC 1 cut(s) 67
SpeI ACTAGT 2 cut(s) 557, 578
Sse9I AATT 3 cut(s) 166, 213, 369
SspI AATATT 1 cut(s) 253
SspMI CTAG 5 cut(s) 318, 443, 558, 579, 601
StyD4I CCNGG 1 cut(s) 430
StyI CCWWGG 1 cut(s) 537
TaaI ACNGT 2 cut(s) 84, 341
TaqI TCGA 1 cut(s) 360
TasI AATT 3 cut(s) 166, 213, 369
TatI WGTACW 2 cut(s) 320, 341
TfiI GAWTC 1 cut(s) 542
Tru1I TTAA 1 cut(s) 86
Tru9I TTAA 1 cut(s) 86
TseFI GTSAC 1 cut(s) 351
Tsp45I GTSAC 1 cut(s) 351
TspDTI ATGAA 2 cut(s) 280, 515
VpaK11BI GGWCC 1 cut(s) 67
XspI CTAG 5 cut(s) 318, 443, 558, 579, 601
ZrmI AGTACT 2 cut(s) 322, 343
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.