Rmu_sc0012468.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0012468.1
OG0016252
Physical Location & Seq
Reverse (-)
550 .. 1035
486 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0012468.1_g000001.1.cds

Sequence Viewer

Length: 486 bp
atgaatgtgaagagtgttttctctggacttggtttggagcatgaggtggaaacatctgaacttaaaggcatttcatctaaacaatacttgttaggggtaaaaagacctgtagtatctgaaatggcaggttctgctatttctgaaagttgtgcaactaagggcacagagaagattcaggttagtgcaatacctaaagctttgtctgcttccatccgcactcaaccaaagccaccctccattgctattgatccaaataataatgcttttcaatcacaagtcaagcctctgtcatttgcacatgcatctccattatcagttcctactcaccctcatttgcagcaagctctcttcaagaaaattgaagttttgcggacaccaggaacttggctaatttcttcatctctggacaaaaatctaatgaattgtaggcaagcttgtgagtctacgaacttgtggcaatcacttcatctcattcctcttggctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

161

Amino Acids

17.4

Weight (kDa)

9.27

Isoelectric Point (pI)

44.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 116
AccI GTMKAC 1 cut(s) 443
AciI CCGC 2 cut(s) 214, 370
AclWI GGATC 1 cut(s) 242
AgsI TTSAA 3 cut(s) 269, 352, 362
AjnI CCWGG 1 cut(s) 376
AluBI AGCT 3 cut(s) 197, 344, 434
AluI AGCT 3 cut(s) 197, 344, 434
AlwI GGATC 1 cut(s) 242
AlwNI CAGNNNCTG 1 cut(s) 131
ApeKI GCWGC 1 cut(s) 337
AsuHPI GGTGA 1 cut(s) 317
BaeGI GKGCMC 1 cut(s) 164
BbvI GCAGC 1 cut(s) 349
BccI CCATC 1 cut(s) 218
BciT130I CCWGG 1 cut(s) 378
BfmI CTRYAG 1 cut(s) 108
BfuAI ACCTGC 1 cut(s) 116
BisI GCNGC 1 cut(s) 338
BlsI GCNGC 1 cut(s) 339
Bme1390I CCNGG 1 cut(s) 378
BmrFI CCNGG 1 cut(s) 378
BmsI GCATC 1 cut(s) 311
Bse3DI GCAATG 1 cut(s) 237
BseBI CCWGG 1 cut(s) 378
BseGI GGATG 1 cut(s) 210
BseMI GCAATG 1 cut(s) 237
BseSI GKGCMC 1 cut(s) 164
BseXI GCAGC 1 cut(s) 349
Bsp1286I GDGCHC 1 cut(s) 164
Bsp143I GATC 1 cut(s) 247
BspACI CCGC 2 cut(s) 214, 370
BspMI ACCTGC 1 cut(s) 116
BspPI GGATC 1 cut(s) 242
BsrDI GCAATG 1 cut(s) 237
BssMI GATC 1 cut(s) 247
Bst2UI CCWGG 1 cut(s) 378
Bst6I CTCTTC 2 cut(s) 5, 353
BstAPI GCANNNNNTGC 1 cut(s) 131
BstC8I GCNNGC 2 cut(s) 342, 432
BstDEI CTNAG 1 cut(s) 156
BstF5I GGATG 1 cut(s) 210
BstKTI GATC 1 cut(s) 250
BstMBI GATC 1 cut(s) 247
BstMWI GCNNNNNNNGC 2 cut(s) 131, 203
BstNI CCWGG 1 cut(s) 378
BstNSI RCATGY 1 cut(s) 302
BstSCI CCNGG 1 cut(s) 376
BstSFI CTRYAG 1 cut(s) 108
BstSLI GKGCMC 1 cut(s) 164
BstV1I GCAGC 1 cut(s) 349
BstXI CCANNNNNNTGG 1 cut(s) 384
BtsCI GGATG 1 cut(s) 210
BveI ACCTGC 1 cut(s) 116
Cac8I GCNNGC 2 cut(s) 342, 432
CaiI CAGNNNCTG 1 cut(s) 131
CviAII CATG 2 cut(s) 41, 299
CviJI RGCY 7 cut(s) 197, 229, 283, 344, 388, 434, 483
CviKI_1 RGCY 7 cut(s) 197, 229, 283, 344, 388, 434, 483
DdeI CTNAG 1 cut(s) 156
DpnI GATC 1 cut(s) 249
DpnII GATC 1 cut(s) 247
Eam1104I CTCTTC 2 cut(s) 5, 353
EarI CTCTTC 2 cut(s) 5, 353
EcoRII CCWGG 1 cut(s) 376
EcoT22I ATGCAT 1 cut(s) 304
FaeI CATG 2 cut(s) 44, 302
FaiI YATR 2 cut(s) 42, 300
FatI CATG 2 cut(s) 40, 298
FblI GTMKAC 1 cut(s) 443
Fnu4HI GCNGC 1 cut(s) 338
FokI GGATG 1 cut(s) 197
Fsp4HI GCNGC 1 cut(s) 338
GluI GCNGC 1 cut(s) 338
Hin1II CATG 2 cut(s) 44, 302
HindIII AAGCTT 2 cut(s) 195, 432
HinfI GANTC 2 cut(s) 172, 440
HphI GGTGA 1 cut(s) 317
Hpy166II GTNNAC 1 cut(s) 444
Hpy188I TCNGA 3 cut(s) 58, 118, 142
Hpy188III TCNNGA 3 cut(s) 24, 352, 404
Hpy8I GTNNAC 1 cut(s) 444
HpyCH4V TGCA 5 cut(s) 152, 185, 296, 302, 337
HpyF10VI GCNNNNNNNGC 2 cut(s) 131, 203
HpyF3I CTNAG 1 cut(s) 156
Hsp92II CATG 2 cut(s) 44, 302
Kzo9I GATC 1 cut(s) 247
LmnI GCTCC 1 cut(s) 37
LpnPI CCDG 7 cut(s) 9, 111, 120, 161, 363, 389, 390
Lsp1109I GCAGC 1 cut(s) 349
LweI GCATC 1 cut(s) 311
MalI GATC 1 cut(s) 249
MboI GATC 1 cut(s) 247
MboII GAAGA 4 cut(s) 22, 181, 340, 387
MhlI GDGCHC 1 cut(s) 164
MluCI AATT 3 cut(s) 357, 390, 421
MlyI GAGTC 1 cut(s) 449
MnlI CCTC 5 cut(s) 37, 244, 294, 339, 486
Mph1103I ATGCAT 1 cut(s) 304
MseI TTAA 1 cut(s) 63
MspR9I CCNGG 1 cut(s) 378
MvaI CCWGG 1 cut(s) 378
MwoI GCNNNNNNNGC 2 cut(s) 131, 203
NdeII GATC 1 cut(s) 247
NlaIII CATG 2 cut(s) 44, 302
NsiI ATGCAT 1 cut(s) 304
NspI RCATGY 1 cut(s) 302
PfeI GAWTC 1 cut(s) 172
PkrI GCNGC 1 cut(s) 339
PleI GAGTC 1 cut(s) 448
PpsI GAGTC 1 cut(s) 448
Psp6I CCWGG 1 cut(s) 376
PspGI CCWGG 1 cut(s) 376
PstNI CAGNNNCTG 1 cut(s) 131
SaqAI TTAA 1 cut(s) 63
SatI GCNGC 1 cut(s) 338
Sau3AI GATC 1 cut(s) 247
SchI GAGTC 1 cut(s) 449
ScrFI CCNGG 1 cut(s) 378
SduI GDGCHC 1 cut(s) 164
SetI ASST 8 cut(s) 48, 109, 130, 180, 193, 199, 346, 436
SfaNI GCATC 1 cut(s) 311
SfcI CTRYAG 1 cut(s) 108
Sse9I AATT 3 cut(s) 357, 390, 421
SsiI CCGC 2 cut(s) 214, 370
StyD4I CCNGG 1 cut(s) 376
TasI AATT 3 cut(s) 357, 390, 421
TfiI GAWTC 1 cut(s) 172
Tru1I TTAA 1 cut(s) 63
Tru9I TTAA 1 cut(s) 63
TseI GCWGC 1 cut(s) 337
TspDTI ATGAA 5 cut(s) 17, 63, 387, 434, 455
XceI RCATGY 1 cut(s) 302
XmiI GTMKAC 1 cut(s) 443
Zsp2I ATGCAT 1 cut(s) 304
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.