FvH4_2g14951

No description available

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Forward (+)
13136603 .. 13137612
1010 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g14951.t1

Sequence Viewer

Length: 240 bp
ATGGAATTCGAGATGGATGTGAATGACTCTCTTGTGCTCTGCACCTTGAGGAAAAAGCCATCACCAGCTGTGGTGGTGGCGGTGCAGGAGAGCAACACCACTCGAAAGAGAAATGACCCATGCGGTAATGATGACTCAAACCACTTGAAAAGTGGCTTCAGATGGTTTTGGATGAGGATCCCATCAGCGATGCCTTGTTGGATGAGTGTCTTGGAGATGCGTAGAATGACAGTCGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

80

Amino Acids

9.21

Weight (kDa)

7.74

Isoelectric Point (pI)

70.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 80, 123
AclWI GGATC 2 cut(s) 172, 185
AcsI RAATTY 1 cut(s) 5
AcuI CTGAAG 1 cut(s) 142
AgsI TTSAA 1 cut(s) 148
AluBI AGCT 1 cut(s) 68
AluI AGCT 1 cut(s) 68
Alw21I GWGCWC 1 cut(s) 39
AlwI GGATC 2 cut(s) 172, 185
ApoI RAATTY 1 cut(s) 5
AsuHPI GGTGA 1 cut(s) 54
BamHI GGATCC 1 cut(s) 177
Bbv12I GWGCWC 1 cut(s) 39
BccI CCATC 4 cut(s) 7, 67, 156, 190
BmiI GGNNCC 1 cut(s) 179
BmsI GCATC 2 cut(s) 180, 207
BpuEI CTTGAG 1 cut(s) 67
BsaBI GATNNNNATC 1 cut(s) 176
Bse8I GATNNNNATC 1 cut(s) 176
BseGI GGATG 3 cut(s) 22, 177, 207
BseJI GATNNNNATC 1 cut(s) 176
BsgI GTGCAG 2 cut(s) 25, 104
BsiHKAI GWGCWC 1 cut(s) 39
Bsp1286I GDGCHC 1 cut(s) 39
Bsp143I GATC 1 cut(s) 177
BspACI CCGC 2 cut(s) 80, 123
BspLI GGNNCC 1 cut(s) 179
BspPI GGATC 2 cut(s) 172, 185
BssMI GATC 1 cut(s) 177
Bst4CI ACNGT 1 cut(s) 232
BstF5I GGATG 3 cut(s) 22, 177, 207
BstKTI GATC 1 cut(s) 180
BstMBI GATC 1 cut(s) 177
BstX2I RGATCY 1 cut(s) 177
BstYI RGATCY 1 cut(s) 177
BtgZI GCGATG 1 cut(s) 203
BtsCI GGATG 3 cut(s) 22, 177, 207
CviAII CATG 1 cut(s) 120
CviJI RGCY 3 cut(s) 58, 68, 156
CviKI_1 RGCY 3 cut(s) 58, 68, 156
DpnI GATC 1 cut(s) 179
DpnII GATC 1 cut(s) 177
Eco57I CTGAAG 1 cut(s) 142
EcoRI GAATTC 1 cut(s) 5
FaeI CATG 1 cut(s) 123
FaiI YATR 1 cut(s) 121
FatI CATG 1 cut(s) 119
FokI GGATG 3 cut(s) 29, 184, 214
Hin1II CATG 1 cut(s) 123
HinfI GANTC 2 cut(s) 26, 134
HphI GGTGA 1 cut(s) 54
Hpy188I TCNGA 1 cut(s) 161
Hpy188III TCNNGA 1 cut(s) 10
HpyCH4III ACNGT 1 cut(s) 232
HpyCH4V TGCA 2 cut(s) 42, 85
Hsp92II CATG 1 cut(s) 123
Kzo9I GATC 1 cut(s) 177
LpnPI CCDG 2 cut(s) 71, 78
LweI GCATC 2 cut(s) 180, 207
MalI GATC 1 cut(s) 179
MboI GATC 1 cut(s) 177
MflI RGATCY 1 cut(s) 177
MhlI GDGCHC 1 cut(s) 39
MluCI AATT 1 cut(s) 5
MlyI GAGTC 2 cut(s) 20, 128
MmeI TCCRAC 1 cut(s) 179
MnlI CCTC 2 cut(s) 42, 168
MspA1I CMGCKG 1 cut(s) 68
NdeII GATC 1 cut(s) 177
NlaIII CATG 1 cut(s) 123
NlaIV GGNNCC 1 cut(s) 179
PleI GAGTC 2 cut(s) 20, 128
PpsI GAGTC 2 cut(s) 20, 128
PspN4I GGNNCC 1 cut(s) 179
PsuI RGATCY 1 cut(s) 177
PvuII CAGCTG 1 cut(s) 68
Sau3AI GATC 1 cut(s) 177
SchI GAGTC 2 cut(s) 20, 128
SduI GDGCHC 1 cut(s) 39
SetI ASST 2 cut(s) 47, 70
SfaNI GCATC 2 cut(s) 180, 207
SmlI CTYRAG 1 cut(s) 46
SmoI CTYRAG 1 cut(s) 46
Sse9I AATT 1 cut(s) 5
SsiI CCGC 2 cut(s) 80, 123
TaaI ACNGT 1 cut(s) 232
TaqI TCGA 3 cut(s) 9, 103, 234
TasI AATT 1 cut(s) 5
XapI RAATTY 1 cut(s) 5
XcmI CCANNNNNNNNNTGG 1 cut(s) 149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.