Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0015536

Physical Location & Seq

Genomic Coordinates Reverse (-)

2341385 .. 2343687

Gene Structure 2303 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000015904

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGGGCTGCACGACCCTCTTTCTCTCTCTCTCACCCACGCACTGCCACAGCCGGAAATCATGGCGTCCGGCGCCGGAAATACGGAGCTCAGAGCTCCATTCCTCCATCCCCACCCACCTCATCTCCCTCGATGCTCAGATCAACACCTTGGCCTTGCCGGAGCTCTCCAAGGTCGTTCTCCTCTTACCTCGCCTTAAGCCCAATCCCGGCGACTCCTCCTCCGCTGTCGCTTCTCCCGTCGAAATATTGAAACCCGATTGGCTTTCCAAGCATCGCACCAAAGTCCCAACCGTCTCCGCCTACCTCATCTTCTCAGATCGGGTCTCCAACGATCCGGCCCAGTGGCTCGAGCTCTGCTTTGAAAATCTTCTTTGCACCGAGAGACTGGATTTTTCTTCAAGTTTTGGTTTTCGATTGAAAATTGAACTTTCTATAGATCTGGGCTCGGAGTTTGATGAAGAACCACGAGACTGGGCGAGGTCGAGCTCCACAATCGCATCCAAACGGAGGAGCGTGGAGTTGATGCGCTGCTGGGCGAGGTCGAGCTCGCAGACCTTGGCGCTGACGTGGCGGGCGAGGTCGCGGATCTTGGCGCTGACCCCGAGGAGGGCAAACACTAACAGACCTCCGGCATCATCTAAGAGAAACCCAGTGTTGGGAGACGAGCTCGAGGGAGGTCATGGCGCAGAAGATGACGTCTGGCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00910 map00910

Pfam Domains

Protein Families

Foie-gras_1 Gryzun-like

Protein Analysis

236

Amino Acids

26.31

Weight (kDa)

8.67

Isoelectric Point (pI)

63.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015536)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g09871 FvH4_2g09871 FvH4_2g14951
rosa_chinensis	RchiOBHm_Chr7g0224701
rosa_laevigata	RLG00000001816 RLG00000013553 RLG00000015904 RLG00000023570 RLG00000031249 RLG00000034529
rosa_multiflora	Rmu_sc0001551.1_g000015 Rmu_sc0012351.1_g000012
rosa_roxburghii	Rroxscaffold_3G00233850
rosa_samantha	Rh3DG202300 Rh7CG396800 Rh7DG374900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	699
AccB1I	GGYRCC	1 cut(s)	70
AccII	CGCG	1 cut(s)	583
AciI	CCGC	4 cut(s)	222, 297, 571, 583
AclWI	GGATC	2 cut(s)	326, 593
AcyI	GRCGYC	3 cut(s)	64, 71, 696
AfiI	CCNNNNNNNGG	6 cut(s)	206, 507, 606, 607, 655, 656
AflII	CTTAAG	1 cut(s)	194
AgsI	TTSAA	5 cut(s)	250, 362, 399, 418, 425
AjiI	CACGTC	1 cut(s)	567
AluBI	AGCT	7 cut(s)	87, 94, 163, 352, 486, 546, 667
AluI	AGCT	7 cut(s)	87, 94, 163, 352, 486, 546, 667
Alw21I	GWGCWC	7 cut(s)	89, 96, 165, 354, 488, 548, 669
Alw26I	GTCTC	5 cut(s)	298, 328, 376, 462, 654
AlwI	GGATC	2 cut(s)	326, 593
Ama87I	CYCGRG	3 cut(s)	347, 601, 668
AoxI	GGCC	2 cut(s)	150, 336
ApeKI	GCWGC	2 cut(s)	6, 528
Asp700I	GAANNNNTTC	1 cut(s)	366
AspLEI	GCGC	5 cut(s)	73, 528, 562, 595, 686
AspS9I	GGNCC	1 cut(s)	337
AsuC2I	CCSGG	1 cut(s)	207
AsuHPI	GGTGA	1 cut(s)	24
AvaI	CYCGRG	3 cut(s)	347, 601, 668
BanI	GGYRCC	1 cut(s)	70
BanII	GRGCYC	8 cut(s)	89, 96, 165, 354, 446, 488, 548, 669
BauI	CACGAG	1 cut(s)	465
Bbv12I	GWGCWC	7 cut(s)	89, 96, 165, 354, 488, 548, 669
BbvI	GCAGC	1 cut(s)	515
BccI	CCATC	1 cut(s)	113
BcnI	CCSGG	1 cut(s)	207
BcoDI	GTCTC	5 cut(s)	298, 328, 376, 462, 654
BfmI	CTRYAG	1 cut(s)	432
BfoI	RGCGCY	3 cut(s)	74, 563, 596
BfrI	CTTAAG	1 cut(s)	194
BglII	AGATCT	1 cut(s)	436
BisI	GCNGC	2 cut(s)	7, 529
BlsI	GCNGC	2 cut(s)	8, 530
Bme1390I	CCNGG	1 cut(s)	207
BmeT110I	CYCGRG	3 cut(s)	347, 601, 668
BmgBI	CACGTC	1 cut(s)	567
BmgT120I	GGNCC	1 cut(s)	337
BmiI	GGNNCC	1 cut(s)	72
BmrFI	CCNGG	1 cut(s)	207
BmrI	ACTGGG	3 cut(s)	334, 481, 644
BmsI	GCATC	5 cut(s)	121, 280, 506, 513, 641
BmuI	ACTGGG	3 cut(s)	334, 481, 644
BplI	GAGNNNNNCTC	2 cut(s)	651, 683
BpuMI	CCSGG	1 cut(s)	207
BsaHI	GRCGYC	3 cut(s)	64, 71, 696
BsaI	GGTCTC	1 cut(s)	328
BsaJI	CCNNGG	4 cut(s)	147, 168, 555, 602
BsaXI	ACNNNNNCTCC	4 cut(s)	107, 137, 203, 233
Bsc4I	CCNNNNNNNGG	6 cut(s)	206, 507, 606, 607, 655, 656
Bse1I	ACTGG	4 cut(s)	340, 390, 476, 650
BseDI	CCNNGG	4 cut(s)	147, 168, 555, 602
BseGI	GGATG	2 cut(s)	105, 497
BseLI	CCNNNNNNNGG	6 cut(s)	206, 507, 606, 607, 655, 656
BseMII	CTCAG	3 cut(s)	102, 149, 327
BseNI	ACTGG	4 cut(s)	340, 390, 476, 650
BseRI	GAGGAG	5 cut(s)	170, 205, 208, 523, 619
BseXI	GCAGC	1 cut(s)	515
BseYI	CCCAGC	1 cut(s)	531
Bsh1236I	CGCG	1 cut(s)	583
BshFI	GGCC	2 cut(s)	152, 338
BshNI	GGYRCC	1 cut(s)	70
BsiHKAI	GWGCWC	7 cut(s)	89, 96, 165, 354, 488, 548, 669
BsiHKCI	CYCGRG	3 cut(s)	347, 601, 668
BsiSI	CCGG	7 cut(s)	52, 68, 74, 158, 207, 335, 629
BslFI	GGGAC	1 cut(s)	269
BslI	CCNNNNNNNGG	6 cut(s)	206, 507, 606, 607, 655, 656
BsmAI	GTCTC	5 cut(s)	298, 328, 376, 462, 654
BsmBI	CGTCTC	2 cut(s)	298, 654
BsmFI	GGGAC	1 cut(s)	269
BsnI	GGCC	2 cut(s)	152, 338
Bso31I	GGTCTC	1 cut(s)	328
BsoBI	CYCGRG	3 cut(s)	347, 601, 668
Bsp1286I	GDGCHC	8 cut(s)	89, 96, 165, 354, 446, 488, 548, 669
Bsp143I	GATC	5 cut(s)	138, 316, 331, 436, 585
BspACI	CCGC	4 cut(s)	222, 297, 571, 583
BspANI	GGCC	2 cut(s)	152, 338
BspCNI	CTCAG	3 cut(s)	101, 148, 326
BspFNI	CGCG	1 cut(s)	583
BspLI	GGNNCC	1 cut(s)	72
BspPI	GGATC	2 cut(s)	326, 593
BspT107I	GGYRCC	1 cut(s)	70
BspTI	CTTAAG	1 cut(s)	194
BspTNI	GGTCTC	1 cut(s)	328
BsrI	ACTGG	4 cut(s)	340, 390, 476, 650
BssECI	CCNNGG	4 cut(s)	147, 168, 555, 602
BssMI	GATC	5 cut(s)	138, 316, 331, 436, 585
BssNI	GRCGYC	3 cut(s)	64, 71, 696
BssSI	CACGAG	1 cut(s)	465
BssT1I	CCWWGG	3 cut(s)	147, 168, 555
Bst2BI	CACGAG	1 cut(s)	465
Bst4CI	ACNGT	1 cut(s)	292
BstACI	GRCGYC	3 cut(s)	64, 71, 696
BstAFI	CTTAAG	1 cut(s)	194
BstC8I	GCNNGC	2 cut(s)	548, 573
BstDEI	CTNAG	4 cut(s)	88, 135, 313, 639
BstF5I	GGATG	2 cut(s)	105, 497
BstFNI	CGCG	1 cut(s)	583
BstH2I	RGCGCY	3 cut(s)	74, 563, 596
BstHHI	GCGC	5 cut(s)	73, 528, 562, 595, 686
BstKTI	GATC	5 cut(s)	141, 319, 334, 439, 588
BstMAI	GTCTC	5 cut(s)	298, 328, 376, 462, 654
BstMBI	GATC	5 cut(s)	138, 316, 331, 436, 585
BstMWI	GCNNNNNNNGC	3 cut(s)	70, 268, 568
BstSCI	CCNGG	1 cut(s)	205
BstSFI	CTRYAG	1 cut(s)	432
BstUI	CGCG	1 cut(s)	583
BstV1I	GCAGC	1 cut(s)	515
BstX2I	RGATCY	2 cut(s)	436, 585
BstXI	CCANNNNNNTGG	1 cut(s)	471
BstYI	RGATCY	2 cut(s)	436, 585
BsuRI	GGCC	2 cut(s)	152, 338
BtgZI	GCGATG	1 cut(s)	257
BtrI	CACGTC	1 cut(s)	567
BtsCI	GGATG	2 cut(s)	105, 497
BtsI	GCAGTG	1 cut(s)	40
BtsIMutI	CAGTG	3 cut(s)	40, 347, 657
Cac8I	GCNNGC	2 cut(s)	548, 573
CfoI	GCGC	5 cut(s)	73, 528, 562, 595, 686
Cfr13I	GGNCC	1 cut(s)	337
CseI	GACGC	1 cut(s)	53
CviAII	CATG	2 cut(s)	60, 680
DdeI	CTNAG	4 cut(s)	88, 135, 313, 639
DinI	GGCGCC	1 cut(s)	72
DpnI	GATC	5 cut(s)	140, 318, 333, 438, 587
DpnII	GATC	5 cut(s)	138, 316, 331, 436, 585
EciI	GGCGGA	1 cut(s)	286
Ecl136II	GAGCTC	7 cut(s)	87, 94, 163, 352, 486, 546, 667
Eco130I	CCWWGG	3 cut(s)	147, 168, 555
Eco24I	GRGCYC	8 cut(s)	89, 96, 165, 354, 446, 488, 548, 669
Eco31I	GGTCTC	1 cut(s)	328
Eco53kI	GAGCTC	7 cut(s)	87, 94, 163, 352, 486, 546, 667
Eco88I	CYCGRG	3 cut(s)	347, 601, 668
EcoICRI	GAGCTC	7 cut(s)	87, 94, 163, 352, 486, 546, 667
EcoT14I	CCWWGG	3 cut(s)	147, 168, 555
EcoT38I	GRGCYC	8 cut(s)	89, 96, 165, 354, 446, 488, 548, 669
EgeI	GGCGCC	1 cut(s)	72
EheI	GGCGCC	1 cut(s)	72
ErhI	CCWWGG	3 cut(s)	147, 168, 555
Esp3I	CGTCTC	2 cut(s)	298, 654
FaeI	CATG	2 cut(s)	63, 683
FaiI	YATR	3 cut(s)	61, 434, 681
FaqI	GGGAC	1 cut(s)	269
FatI	CATG	2 cut(s)	59, 679
FauI	CCCGC	1 cut(s)	564
Fnu4HI	GCNGC	2 cut(s)	7, 529
FokI	GGATG	2 cut(s)	92, 484
FriOI	GRGCYC	8 cut(s)	89, 96, 165, 354, 446, 488, 548, 669
Fsp4HI	GCNGC	2 cut(s)	7, 529
GlaI	GCGC	5 cut(s)	72, 527, 561, 594, 685
GluI	GCNGC	2 cut(s)	7, 529
GsaI	CCCAGC	1 cut(s)	535
HaeII	RGCGCY	3 cut(s)	74, 563, 596
HaeIII	GGCC	2 cut(s)	152, 338
HapII	CCGG	7 cut(s)	52, 68, 74, 158, 207, 335, 629
HgaI	GACGC	1 cut(s)	53
HhaI	GCGC	5 cut(s)	73, 528, 562, 595, 686
Hin1I	GRCGYC	3 cut(s)	64, 71, 696
Hin1II	CATG	2 cut(s)	63, 683
Hin6I	GCGC	5 cut(s)	71, 526, 560, 593, 684
HinP1I	GCGC	5 cut(s)	71, 526, 560, 593, 684
HinfI	GANTC	1 cut(s)	212
HpaII	CCGG	7 cut(s)	52, 68, 74, 158, 207, 335, 629
HphI	GGTGA	1 cut(s)	24
Hpy188I	TCNGA	5 cut(s)	91, 138, 316, 448, 707
Hpy99I	CGWCG	1 cut(s)	242
HpyCH4III	ACNGT	1 cut(s)	292
HpyCH4IV	ACGT	2 cut(s)	566, 696
HpyCH4V	TGCA	2 cut(s)	9, 375
HpyF10VI	GCNNNNNNNGC	3 cut(s)	70, 268, 568
HpyF3I	CTNAG	4 cut(s)	88, 135, 313, 639
HpySE526I	ACGT	2 cut(s)	566, 696
Hsp92I	GRCGYC	3 cut(s)	64, 71, 696
Hsp92II	CATG	2 cut(s)	63, 683
HspAI	GCGC	5 cut(s)	71, 526, 560, 593, 684
KasI	GGCGCC	1 cut(s)	70
Kzo9I	GATC	5 cut(s)	138, 316, 331, 436, 585
LmnI	GCTCC	5 cut(s)	84, 99, 160, 491, 510
Lsp1109I	GCAGC	1 cut(s)	515
LweI	GCATC	5 cut(s)	121, 280, 506, 513, 641
MaeII	ACGT	2 cut(s)	566, 696
MalI	GATC	5 cut(s)	140, 318, 333, 438, 587
MboI	GATC	5 cut(s)	138, 316, 331, 436, 585
MboII	GAAGA	5 cut(s)	301, 359, 387, 470, 701
MflI	RGATCY	2 cut(s)	436, 585
MhlI	GDGCHC	8 cut(s)	89, 96, 165, 354, 446, 488, 548, 669
MluCI	AATT	1 cut(s)	420
Mly113I	GGCGCC	1 cut(s)	71
MlyI	GAGTC	1 cut(s)	206
MmeI	TCCRAC	1 cut(s)	351
MroXI	GAANNNNTTC	1 cut(s)	366
MseI	TTAA	1 cut(s)	195
MspA1I	CMGCKG	1 cut(s)	224
MspCI	CTTAAG	1 cut(s)	194
MspI	CCGG	7 cut(s)	52, 68, 74, 158, 207, 335, 629
MspR9I	CCNGG	1 cut(s)	207
MvnI	CGCG	1 cut(s)	583
MwoI	GCNNNNNNNGC	3 cut(s)	70, 268, 568
NarI	GGCGCC	1 cut(s)	71
NciI	CCSGG	1 cut(s)	207
NdeII	GATC	5 cut(s)	138, 316, 331, 436, 585
NlaIII	CATG	2 cut(s)	63, 683
NlaIV	GGNNCC	1 cut(s)	72
PaeR7I	CTCGAG	2 cut(s)	347, 668
PcsI	WCGNNNNNNNCGW	2 cut(s)	234, 572
PdmI	GAANNNNTTC	1 cut(s)	366
PkrI	GCNGC	2 cut(s)	8, 530
PleI	GAGTC	1 cut(s)	206
PluTI	GGCGCC	1 cut(s)	74
PpsI	GAGTC	1 cut(s)	206
Psp124BI	GAGCTC	7 cut(s)	89, 96, 165, 354, 488, 548, 669
PspFI	CCCAGC	1 cut(s)	531
PspN4I	GGNNCC	1 cut(s)	72
PspPI	GGNCC	1 cut(s)	337
PspXI	VCTCGAGB	2 cut(s)	347, 668
PsuI	RGATCY	2 cut(s)	436, 585
SacI	GAGCTC	7 cut(s)	89, 96, 165, 354, 488, 548, 669
SaqAI	TTAA	1 cut(s)	195
SatI	GCNGC	2 cut(s)	7, 529
Sau3AI	GATC	5 cut(s)	138, 316, 331, 436, 585
Sau96I	GGNCC	1 cut(s)	337
SchI	GAGTC	1 cut(s)	206
ScrFI	CCNGG	1 cut(s)	207
SduI	GDGCHC	8 cut(s)	89, 96, 165, 354, 446, 488, 548, 669
SfaNI	GCATC	5 cut(s)	121, 280, 506, 513, 641
SfcI	CTRYAG	1 cut(s)	432
SfoI	GGCGCC	1 cut(s)	72
Sfr274I	CTCGAG	2 cut(s)	347, 668
SlaI	CTCGAG	2 cut(s)	347, 668
SmlI	CTYRAG	3 cut(s)	194, 347, 668
SmoI	CTYRAG	3 cut(s)	194, 347, 668
Sse9I	AATT	1 cut(s)	420
SsiI	CCGC	4 cut(s)	222, 297, 571, 583
SspDI	GGCGCC	1 cut(s)	70
SspI	AATATT	1 cut(s)	246
SstI	GAGCTC	7 cut(s)	89, 96, 165, 354, 488, 548, 669
StyD4I	CCNGG	1 cut(s)	205
StyI	CCWWGG	3 cut(s)	147, 168, 555
TaaI	ACNGT	1 cut(s)	292
TaiI	ACGT	2 cut(s)	569, 699
TaqI	TCGA	7 cut(s)	129, 240, 348, 412, 482, 542, 669
TasI	AATT	1 cut(s)	420
Tru1I	TTAA	1 cut(s)	195
Tru9I	TTAA	1 cut(s)	195
TscAI	CASTG	3 cut(s)	47, 347, 657
TseI	GCWGC	2 cut(s)	6, 528
TspDTI	ATGAA	1 cut(s)	471
TspGWI	ACGGA	2 cut(s)	97, 520
TspRI	CASTG	3 cut(s)	47, 347, 657
Vha464I	CTTAAG	1 cut(s)	194
XhoI	CTCGAG	2 cut(s)	347, 668
XmnI	GAANNNNTTC	1 cut(s)	366
ZraI	GACGTC	1 cut(s)	697

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.