Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0015536

Physical Location & Seq

Genomic Coordinates Forward (+)

20162026 .. 20163101

Gene Structure 1076 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00233850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGGAAGGATTGCCGGTGGGTTACCAGTTCCACCCCACCGACAATGAGCTGGTCATCCGGGAGAGTTACGGTGGGGAGGATGGAGAAGCCCTTCACTTGTTTGCCAAAAGGCATAAACTTCACAAAGCAACGGCAATGCTAAACGCTTCGATAGAAAGGTCGGCTCCGGCATATGGAACGCTCGAGTTCACACGGTGGCTACAGGTGGTTTTGGCTGAGGAAATCAGCATCAACTCTATGGATGATGTCACCCTCAATGCCACATTGGGTGAGAGTCTTGGAGGAACTGCATATGGTTTGGGCGATTCTTGTGTGGATCAACAGGATATCTATTCTACTTTACCTTCTACTATTGATCCTACTCTATTTGATTTTACTAACAATGCAAATGCAAATTCCTTGTGGATAGTCAGGTCTTATTCTTCTTTATTGGCATCACCTGTTAATTTCGATGATCTATTATGTGATGCTAATCAAAATAATGATGCAAGCTCTTCACGGATGCAAAGCATATGCTCATTTGTATCCGATGATAATATTTTATGTGATGCTACTCATGACAATAATGCAGGTTCTTCATATGCACAAAGCATTGAAGCCTTTGATGGTCAGGTGATGCGCTCAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

209

Amino Acids

22.78

Weight (kDa)

4.3

Isoelectric Point (pI)

56.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015536)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g09871 FvH4_2g09871 FvH4_2g14951
rosa_chinensis	RchiOBHm_Chr7g0224701
rosa_laevigata	RLG00000001816 RLG00000013553 RLG00000015904 RLG00000023570 RLG00000031249 RLG00000034529
rosa_multiflora	Rmu_sc0001551.1_g000015 Rmu_sc0012351.1_g000012
rosa_roxburghii	Rroxscaffold_3G00233850
rosa_samantha	Rh3DG202300 Rh7CG396800 Rh7DG374900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	560
AclWI	GGATC	2 cut(s)	324, 350
AcsI	RAATTY	1 cut(s)	394
AdeI	CACNNNGTG	1 cut(s)	195
AfiI	CCNNNNNNNGG	1 cut(s)	173
AgsI	TTSAA	1 cut(s)	596
AluBI	AGCT	2 cut(s)	49, 492
AluI	AGCT	2 cut(s)	49, 492
AlwI	GGATC	2 cut(s)	324, 350
Ama87I	CYCGRG	1 cut(s)	182
ApoI	RAATTY	1 cut(s)	394
Asp700I	GAANNNNTTC	1 cut(s)	90
AspLEI	GCGC	1 cut(s)	621
AsuC2I	CCSGG	1 cut(s)	59
AsuHPI	GGTGA	4 cut(s)	241, 281, 429, 625
AvaI	CYCGRG	1 cut(s)	182
BbvCI	CCTCAGC	1 cut(s)	216
BccI	CCATC	2 cut(s)	74, 599
BceAI	ACGGC	1 cut(s)	147
BciVI	GTATCC	1 cut(s)	535
BcnI	CCSGG	1 cut(s)	59
BfmI	CTRYAG	1 cut(s)	200
BfuAI	ACCTGC	1 cut(s)	560
BfuI	GTATCC	1 cut(s)	535
Bme1390I	CCNGG	1 cut(s)	59
BmeT110I	CYCGRG	1 cut(s)	182
BmiI	GGNNCC	1 cut(s)	165
BmrFI	CCNGG	1 cut(s)	59
BmsI	GCATC	7 cut(s)	237, 443, 457, 475, 492, 538, 606
Bpu10I	CCTNAGC	1 cut(s)	216
BpuMI	CCSGG	1 cut(s)	59
BsaBI	GATNNNNATC	1 cut(s)	471
Bsc4I	CCNNNNNNNGG	1 cut(s)	173
Bse118I	RCCGGY	1 cut(s)	13
Bse1I	ACTGG	1 cut(s)	25
Bse3DI	GCAATG	1 cut(s)	141
Bse8I	GATNNNNATC	1 cut(s)	471
BseGI	GGATG	4 cut(s)	54, 85, 247, 507
BseJI	GATNNNNATC	1 cut(s)	471
BseLI	CCNNNNNNNGG	1 cut(s)	173
BseMI	GCAATG	1 cut(s)	141
BseMII	CTCAG	1 cut(s)	207
BseNI	ACTGG	1 cut(s)	25
BsiHKCI	CYCGRG	1 cut(s)	182
BsiSI	CCGG	3 cut(s)	14, 58, 167
BslI	CCNNNNNNNGG	1 cut(s)	173
BsoBI	CYCGRG	1 cut(s)	182
Bsp143I	GATC	3 cut(s)	316, 355, 454
BspCNI	CTCAG	1 cut(s)	208
BspHI	TCATGA	1 cut(s)	556
BspLI	GGNNCC	1 cut(s)	165
BspMI	ACCTGC	1 cut(s)	560
BspPI	GGATC	2 cut(s)	324, 350
BspQI	GCTCTTC	1 cut(s)	499
BsrDI	GCAATG	1 cut(s)	141
BsrFI	RCCGGY	1 cut(s)	13
BsrI	ACTGG	1 cut(s)	25
BssAI	RCCGGY	1 cut(s)	13
BssMI	GATC	3 cut(s)	316, 355, 454
Bst4CI	ACNGT	2 cut(s)	71, 195
Bst6I	CTCTTC	1 cut(s)	499
BstC8I	GCNNGC	1 cut(s)	490
BstDEI	CTNAG	1 cut(s)	216
BstEII	GGTNACC	1 cut(s)	20
BstF5I	GGATG	4 cut(s)	54, 85, 247, 507
BstHHI	GCGC	1 cut(s)	621
BstKTI	GATC	3 cut(s)	319, 358, 457
BstMBI	GATC	3 cut(s)	316, 355, 454
BstPI	GGTNACC	1 cut(s)	20
BstSCI	CCNGG	1 cut(s)	57
BstSFI	CTRYAG	1 cut(s)	200
BsuI	GTATCC	1 cut(s)	535
BtsCI	GGATG	4 cut(s)	54, 85, 247, 507
BveI	ACCTGC	1 cut(s)	560
Cac8I	GCNNGC	1 cut(s)	490
CciI	TCATGA	1 cut(s)	556
CfoI	GCGC	1 cut(s)	621
Cfr10I	RCCGGY	1 cut(s)	13
CviAII	CATG	1 cut(s)	557
CviJI	RGCY	7 cut(s)	49, 89, 164, 199, 215, 492, 599
CviKI_1	RGCY	7 cut(s)	49, 89, 164, 199, 215, 492, 599
DdeI	CTNAG	1 cut(s)	216
DpnI	GATC	3 cut(s)	318, 357, 456
DpnII	GATC	3 cut(s)	316, 355, 454
DraIII	CACNNNGTG	1 cut(s)	195
Eam1104I	CTCTTC	1 cut(s)	499
EarI	CTCTTC	1 cut(s)	499
Eco32I	GATATC	1 cut(s)	328
Eco88I	CYCGRG	1 cut(s)	182
Eco91I	GGTNACC	1 cut(s)	20
EcoO65I	GGTNACC	1 cut(s)	20
EcoRV	GATATC	1 cut(s)	328
FaeI	CATG	1 cut(s)	560
FatI	CATG	1 cut(s)	556
FauNDI	CATATG	4 cut(s)	172, 292, 512, 580
FokI	GGATG	4 cut(s)	41, 92, 254, 514
GlaI	GCGC	1 cut(s)	620
HapII	CCGG	3 cut(s)	14, 58, 167
HhaI	GCGC	1 cut(s)	621
Hin1II	CATG	1 cut(s)	560
Hin6I	GCGC	1 cut(s)	619
HinP1I	GCGC	1 cut(s)	619
HinfI	GANTC	2 cut(s)	274, 305
HpaII	CCGG	3 cut(s)	14, 58, 167
HphI	GGTGA	4 cut(s)	241, 281, 429, 625
Hpy166II	GTNNAC	1 cut(s)	189
Hpy188I	TCNGA	1 cut(s)	529
Hpy188III	TCNNGA	1 cut(s)	557
Hpy8I	GTNNAC	1 cut(s)	189
HpyAV	CCTTC	2 cut(s)	101, 354
HpyCH4III	ACNGT	2 cut(s)	71, 195
HpyCH4V	TGCA	7 cut(s)	290, 386, 392, 488, 505, 569, 584
HpyF3I	CTNAG	1 cut(s)	216
Hsp92II	CATG	1 cut(s)	560
HspAI	GCGC	1 cut(s)	619
Kzo9I	GATC	3 cut(s)	316, 355, 454
LguI	GCTCTTC	1 cut(s)	499
LmnI	GCTCC	1 cut(s)	169
LweI	GCATC	7 cut(s)	237, 443, 457, 475, 492, 538, 606
MaeIII	GTNAC	3 cut(s)	20, 65, 247
MalI	GATC	3 cut(s)	318, 357, 456
MboI	GATC	3 cut(s)	316, 355, 454
MboII	GAAGA	3 cut(s)	414, 486, 567
MluCI	AATT	2 cut(s)	394, 445
MlyI	GAGTC	1 cut(s)	283
MnlI	CCTC	4 cut(s)	70, 211, 263, 275
MroXI	GAANNNNTTC	1 cut(s)	90
MseI	TTAA	1 cut(s)	444
MspI	CCGG	3 cut(s)	14, 58, 167
MspR9I	CCNGG	1 cut(s)	59
NciI	CCSGG	1 cut(s)	59
NdeI	CATATG	4 cut(s)	172, 292, 512, 580
NdeII	GATC	3 cut(s)	316, 355, 454
NlaIII	CATG	1 cut(s)	560
NlaIV	GGNNCC	1 cut(s)	165
NmuCI	GTSAC	1 cut(s)	247
PaeR7I	CTCGAG	1 cut(s)	182
PagI	TCATGA	1 cut(s)	556
PciSI	GCTCTTC	1 cut(s)	499
PdmI	GAANNNNTTC	1 cut(s)	90
PfeI	GAWTC	1 cut(s)	305
PfoI	TCCNGGA	1 cut(s)	57
PleI	GAGTC	1 cut(s)	282
PpsI	GAGTC	1 cut(s)	282
PspEI	GGTNACC	1 cut(s)	20
PspN4I	GGNNCC	1 cut(s)	165
PspXI	VCTCGAGB	1 cut(s)	182
SapI	GCTCTTC	1 cut(s)	499
SaqAI	TTAA	1 cut(s)	444
Sau3AI	GATC	3 cut(s)	316, 355, 454
SchI	GAGTC	1 cut(s)	283
ScrFI	CCNGG	1 cut(s)	59
SetI	ASST	9 cut(s)	51, 161, 207, 346, 416, 442, 494, 574, 615
SfaNI	GCATC	7 cut(s)	237, 443, 457, 475, 492, 538, 606
SfcI	CTRYAG	1 cut(s)	200
Sfr274I	CTCGAG	1 cut(s)	182
SlaI	CTCGAG	1 cut(s)	182
SmlI	CTYRAG	1 cut(s)	182
SmoI	CTYRAG	1 cut(s)	182
Sse9I	AATT	2 cut(s)	394, 445
SspI	AATATT	1 cut(s)	538
StyD4I	CCNGG	1 cut(s)	57
TaaI	ACNGT	2 cut(s)	71, 195
TaqI	TCGA	3 cut(s)	149, 183, 450
TasI	AATT	2 cut(s)	394, 445
TfiI	GAWTC	1 cut(s)	305
Tru1I	TTAA	1 cut(s)	444
Tru9I	TTAA	1 cut(s)	444
TseFI	GTSAC	1 cut(s)	247
Tsp45I	GTSAC	1 cut(s)	247
TspDTI	ATGAA	1 cut(s)	567
TspGWI	ACGGA	1 cut(s)	514
XapI	RAATTY	1 cut(s)	394
XhoI	CTCGAG	1 cut(s)	182
XmnI	GAANNNNTTC	1 cut(s)	90

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.