Rmu_sc0012351.1_g000012

trafficking protein particle complex

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0012351.1
OG0015536
Physical Location & Seq
Forward (+)
61032 .. 61529
498 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0012351.1_g000012.1.cds

Sequence Viewer

Length: 498 bp
atgaggcccactttaggggctaaaaatgtcatttcaaatacattttcttcttttctcctctctctcagctccgatggtttctctttctctctctttctctcctccctctctctctgggttgcacgaccttctctctctctctctctctctctctctcacccacgcactgccaccgccggaaatcatggcgtccgactccggaaatacggagcacattcctccatccccacccacctcatctccctcgacgctcagatcaacaccttggccttgccggagctctccaaggtcgttctcctcttacctcgccttaaccccaatcccggcgactcatactccgctgtcgcttctctcgccgaaatattgaagcccgattggctttccaagcatcggaccaaagtcccaaccgtctccgcctacctcatcttctcagatcgggtctccaacgatccggcccagtggctcgagctctgctttgaaaatcttctttgcacctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00910 map00910
Pfam Domains
Protein Families
Foie-gras_1 Gryzun-like

Protein Analysis

165

Amino Acids

18.0

Weight (kDa)

9.34

Isoelectric Point (pI)

24.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 198
AciI CCGC 3 cut(s) 174, 339, 414
AclWI GGATC 1 cut(s) 443
AcyI GRCGYC 1 cut(s) 189
AfiI CCNNNNNNNGG 4 cut(s) 14, 15, 323, 390
AgsI TTSAA 3 cut(s) 36, 367, 479
AluBI AGCT 3 cut(s) 69, 280, 469
AluI AGCT 3 cut(s) 69, 280, 469
Alw21I GWGCWC 3 cut(s) 214, 282, 471
Alw26I GTCTC 2 cut(s) 415, 445
AlwI GGATC 1 cut(s) 443
Ama87I CYCGRG 1 cut(s) 464
Aor13HI TCCGGA 1 cut(s) 198
AoxI GGCC 3 cut(s) 5, 267, 453
Asp700I GAANNNNTTC 1 cut(s) 483
AspS9I GGNCC 3 cut(s) 6, 393, 454
AsuC2I CCSGG 1 cut(s) 324
AsuHPI GGTGA 1 cut(s) 149
AvaI CYCGRG 1 cut(s) 464
AvaII GGWCC 1 cut(s) 393
BanII GRGCYC 2 cut(s) 282, 471
Bbv12I GWGCWC 3 cut(s) 214, 282, 471
BccI CCATC 2 cut(s) 68, 230
BcnI CCSGG 1 cut(s) 324
BcoDI GTCTC 2 cut(s) 415, 445
BfaI CTAG 1 cut(s) 496
BglI GCCNNNNNGGC 1 cut(s) 376
Bme1390I CCNGG 1 cut(s) 324
Bme18I GGWCC 1 cut(s) 393
BmeT110I CYCGRG 1 cut(s) 464
BmgT120I GGNCC 3 cut(s) 6, 393, 454
BmrFI CCNGG 1 cut(s) 324
BmrI ACTGGG 1 cut(s) 451
BmsI GCATC 1 cut(s) 397
BmuI ACTGGG 1 cut(s) 451
BoxI GACNNNNGTC 1 cut(s) 398
BpuMI CCSGG 1 cut(s) 324
BsaHI GRCGYC 1 cut(s) 189
BsaI GGTCTC 1 cut(s) 445
BsaJI CCNNGG 2 cut(s) 264, 285
BsaWI WCCGGW 1 cut(s) 198
BsaXI ACNNNNNCTCC 4 cut(s) 224, 254, 320, 350
Bsc4I CCNNNNNNNGG 4 cut(s) 14, 15, 323, 390
Bse1I ACTGG 1 cut(s) 457
BseAI TCCGGA 1 cut(s) 198
BseDI CCNNGG 2 cut(s) 264, 285
BseGI GGATG 1 cut(s) 222
BseLI CCNNNNNNNGG 4 cut(s) 14, 15, 323, 390
BseMII CTCAG 3 cut(s) 79, 266, 444
BseNI ACTGG 1 cut(s) 457
BseRI GAGGAG 3 cut(s) 47, 91, 287
BshFI GGCC 3 cut(s) 7, 269, 455
BsiHKAI GWGCWC 3 cut(s) 214, 282, 471
BsiHKCI CYCGRG 1 cut(s) 464
BsiSI CCGG 5 cut(s) 177, 199, 275, 324, 452
BslFI GGGAC 1 cut(s) 386
BslI CCNNNNNNNGG 4 cut(s) 14, 15, 323, 390
BsmAI GTCTC 2 cut(s) 415, 445
BsmBI CGTCTC 1 cut(s) 415
BsmFI GGGAC 1 cut(s) 386
BsnI GGCC 3 cut(s) 7, 269, 455
Bso31I GGTCTC 1 cut(s) 445
BsoBI CYCGRG 1 cut(s) 464
Bsp1286I GDGCHC 3 cut(s) 214, 282, 471
Bsp13I TCCGGA 1 cut(s) 198
Bsp143I GATC 3 cut(s) 255, 433, 448
BspACI CCGC 3 cut(s) 174, 339, 414
BspANI GGCC 3 cut(s) 7, 269, 455
BspCNI CTCAG 3 cut(s) 78, 265, 443
BspEI TCCGGA 1 cut(s) 198
BspPI GGATC 1 cut(s) 443
BspTNI GGTCTC 1 cut(s) 445
BsrI ACTGG 1 cut(s) 457
BssECI CCNNGG 2 cut(s) 264, 285
BssMI GATC 3 cut(s) 255, 433, 448
BssNI GRCGYC 1 cut(s) 189
BssT1I CCWWGG 2 cut(s) 264, 285
Bst4CI ACNGT 1 cut(s) 409
BstACI GRCGYC 1 cut(s) 189
BstDEI CTNAG 3 cut(s) 65, 252, 430
BstF5I GGATG 1 cut(s) 222
BstKTI GATC 3 cut(s) 258, 436, 451
BstMAI GTCTC 2 cut(s) 415, 445
BstMBI GATC 3 cut(s) 255, 433, 448
BstMWI GCNNNNNNNGC 3 cut(s) 353, 376, 385
BstPAI GACNNNNGTC 1 cut(s) 398
BstSCI CCNGG 1 cut(s) 322
BsuRI GGCC 3 cut(s) 7, 269, 455
BtsCI GGATG 1 cut(s) 222
BtsI GCAGTG 1 cut(s) 165
BtsIMutI CAGTG 2 cut(s) 165, 464
Cfr13I GGNCC 3 cut(s) 6, 393, 454
CseI GACGC 2 cut(s) 178, 257
CviAII CATG 1 cut(s) 185
DdeI CTNAG 3 cut(s) 65, 252, 430
DpnI GATC 3 cut(s) 257, 435, 450
DpnII GATC 3 cut(s) 255, 433, 448
EciI GGCGGA 1 cut(s) 403
Ecl136II GAGCTC 2 cut(s) 280, 469
Eco130I CCWWGG 2 cut(s) 264, 285
Eco24I GRGCYC 2 cut(s) 282, 471
Eco31I GGTCTC 1 cut(s) 445
Eco47I GGWCC 1 cut(s) 393
Eco53kI GAGCTC 2 cut(s) 280, 469
Eco88I CYCGRG 1 cut(s) 464
EcoICRI GAGCTC 2 cut(s) 280, 469
EcoT14I CCWWGG 2 cut(s) 264, 285
EcoT38I GRGCYC 2 cut(s) 282, 471
ErhI CCWWGG 2 cut(s) 264, 285
Esp3I CGTCTC 1 cut(s) 415
FaeI CATG 1 cut(s) 188
FaiI YATR 2 cut(s) 186, 334
FaqI GGGAC 1 cut(s) 386
FatI CATG 1 cut(s) 184
FokI GGATG 1 cut(s) 209
FriOI GRGCYC 2 cut(s) 282, 471
FspBI CTAG 1 cut(s) 496
HaeIII GGCC 3 cut(s) 7, 269, 455
HapII CCGG 5 cut(s) 177, 199, 275, 324, 452
HgaI GACGC 2 cut(s) 178, 257
Hin1I GRCGYC 1 cut(s) 189
Hin1II CATG 1 cut(s) 188
HinfI GANTC 2 cut(s) 195, 329
HpaII CCGG 5 cut(s) 177, 199, 275, 324, 452
HphI GGTGA 1 cut(s) 149
Hpy188I TCNGA 5 cut(s) 73, 194, 255, 393, 433
Hpy188III TCNNGA 1 cut(s) 199
Hpy99I CGWCG 1 cut(s) 251
HpyAV CCTTC 1 cut(s) 138
HpyCH4III ACNGT 1 cut(s) 409
HpyCH4V TGCA 2 cut(s) 122, 492
HpyF10VI GCNNNNNNNGC 3 cut(s) 353, 376, 385
HpyF3I CTNAG 3 cut(s) 65, 252, 430
Hsp92I GRCGYC 1 cut(s) 189
Hsp92II CATG 1 cut(s) 188
Kpn2I TCCGGA 1 cut(s) 198
Kzo9I GATC 3 cut(s) 255, 433, 448
LmnI GCTCC 3 cut(s) 74, 209, 277
LpnPI CCDG 7 cut(s) 100, 190, 212, 288, 337, 465, 470
LweI GCATC 1 cut(s) 397
MaeI CTAG 1 cut(s) 496
MalI GATC 3 cut(s) 257, 435, 450
MboI GATC 3 cut(s) 255, 433, 448
MboII GAAGA 3 cut(s) 39, 418, 476
MhlI GDGCHC 3 cut(s) 214, 282, 471
MlyI GAGTC 2 cut(s) 189, 323
MmeI TCCRAC 2 cut(s) 217, 468
MnlI CCTC 9 cut(s) 68, 112, 116, 229, 245, 254, 308, 315, 431
MroI TCCGGA 1 cut(s) 198
MroXI GAANNNNTTC 1 cut(s) 483
MseI TTAA 1 cut(s) 312
MspA1I CMGCKG 1 cut(s) 341
MspI CCGG 5 cut(s) 177, 199, 275, 324, 452
MspR9I CCNGG 1 cut(s) 324
MwoI GCNNNNNNNGC 3 cut(s) 353, 376, 385
NciI CCSGG 1 cut(s) 324
NdeII GATC 3 cut(s) 255, 433, 448
NlaIII CATG 1 cut(s) 188
PaeR7I CTCGAG 1 cut(s) 464
PdmI GAANNNNTTC 1 cut(s) 483
PleI GAGTC 2 cut(s) 189, 323
PpsI GAGTC 2 cut(s) 189, 323
PshAI GACNNNNGTC 1 cut(s) 398
Psp124BI GAGCTC 2 cut(s) 282, 471
PspPI GGNCC 3 cut(s) 6, 393, 454
PspXI VCTCGAGB 1 cut(s) 464
SacI GAGCTC 2 cut(s) 282, 471
SaqAI TTAA 1 cut(s) 312
Sau3AI GATC 3 cut(s) 255, 433, 448
Sau96I GGNCC 3 cut(s) 6, 393, 454
SchI GAGTC 2 cut(s) 189, 323
ScrFI CCNGG 1 cut(s) 324
SduI GDGCHC 3 cut(s) 214, 282, 471
SfaNI GCATC 1 cut(s) 397
Sfr274I CTCGAG 1 cut(s) 464
SinI GGWCC 1 cut(s) 393
SlaI CTCGAG 1 cut(s) 464
SmlI CTYRAG 1 cut(s) 464
SmoI CTYRAG 1 cut(s) 464
SsiI CCGC 3 cut(s) 174, 339, 414
SspI AATATT 1 cut(s) 363
SspMI CTAG 1 cut(s) 496
SstI GAGCTC 2 cut(s) 282, 471
StyD4I CCNGG 1 cut(s) 322
StyI CCWWGG 2 cut(s) 264, 285
TaaI ACNGT 1 cut(s) 409
TaqI TCGA 2 cut(s) 246, 465
Tru1I TTAA 1 cut(s) 312
Tru9I TTAA 1 cut(s) 312
TscAI CASTG 2 cut(s) 172, 464
TspGWI ACGGA 1 cut(s) 222
TspRI CASTG 2 cut(s) 172, 464
VpaK11BI GGWCC 1 cut(s) 393
XhoI CTCGAG 1 cut(s) 464
XmnI GAANNNNTTC 1 cut(s) 483
XspI CTAG 1 cut(s) 496
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.