Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0015536

Physical Location & Seq

Genomic Coordinates Forward (+)

25299553 .. 25303210

Gene Structure 3658 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000023570

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGGGGTGGGTCCAAATGTTGAGCTTGGAGTTGAGAGCTGTCTGTATAAACCCAAGGGATATCCCTCCTGTCAAGGTGGAGATAGACCTTGTTGCAGATTGTAGCCATAGATATAAATCAAAGGCTTCAGCAGTGATCAACACCTTGGCCTTGCCGGAGCTCTCCAAGGTCGTTCTCCTCTTACGTCGCCTCAAGCCCAATCTTGACGACTCCTCCTCCGATGTCGCTTCTCCCGCCGAAATATTGAAGCCTGATTGGCTTTTTAAGCACCGGACCAAAGTCGGCGCCGTCGCCGCCTACCTCATCTTCTCAGAGAGCCAGTGGCTCGAGCTCTCATTTGAAAATCTCCAGGGACCCATCCGCAGCCGGATCATCAAGATGGTGGATCATCTTGAGGTTGAAGAATCATCAGTGCCAATGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00910 map00910

Pfam Domains

Protein Families

Foie-gras_1 Gryzun-like

Protein Analysis

142

Amino Acids

15.86

Weight (kDa)

6.29

Isoelectric Point (pI)

44.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015536)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g09871 FvH4_2g09871 FvH4_2g14951
rosa_chinensis	RchiOBHm_Chr7g0224701
rosa_laevigata	RLG00000001816 RLG00000013553 RLG00000015904 RLG00000023570 RLG00000031249 RLG00000034529
rosa_multiflora	Rmu_sc0001551.1_g000015 Rmu_sc0012351.1_g000012
rosa_roxburghii	Rroxscaffold_3G00233850
rosa_samantha	Rh3DG202300 Rh7CG396800 Rh7DG374900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	284
AciI	CCGC	3 cut(s)	234, 294, 361
AclWI	GGATC	2 cut(s)	377, 393
AcuI	CTGAAG	1 cut(s)	111
AcyI	GRCGYC	1 cut(s)	285
AgsI	TTSAA	3 cut(s)	247, 341, 401
AjnI	CCWGG	1 cut(s)	348
AluBI	AGCT	4 cut(s)	24, 38, 160, 331
AluI	AGCT	4 cut(s)	24, 38, 160, 331
Alw21I	GWGCWC	2 cut(s)	162, 333
AlwI	GGATC	2 cut(s)	377, 393
Ama87I	CYCGRG	1 cut(s)	326
AoxI	GGCC	1 cut(s)	147
ApeKI	GCWGC	1 cut(s)	363
AspLEI	GCGC	1 cut(s)	287
AspS9I	GGNCC	3 cut(s)	10, 273, 353
AvaI	CYCGRG	1 cut(s)	326
AvaII	GGWCC	3 cut(s)	10, 273, 353
BanI	GGYRCC	1 cut(s)	284
BanII	GRGCYC	2 cut(s)	162, 333
Bbv12I	GWGCWC	2 cut(s)	162, 333
BbvI	GCAGC	1 cut(s)	375
BccI	CCATC	2 cut(s)	365, 373
BceAI	ACGGC	1 cut(s)	272
BciT130I	CCWGG	1 cut(s)	350
BclI	TGATCA	1 cut(s)	135
BfoI	RGCGCY	1 cut(s)	288
BglI	GCCNNNNNGGC	1 cut(s)	256
BisI	GCNGC	2 cut(s)	294, 364
BlsI	GCNGC	2 cut(s)	295, 365
Bme1390I	CCNGG	1 cut(s)	350
Bme18I	GGWCC	3 cut(s)	10, 273, 353
BmeT110I	CYCGRG	1 cut(s)	326
BmgT120I	GGNCC	3 cut(s)	10, 273, 353
BmiI	GGNNCC	4 cut(s)	11, 286, 354, 355
BmrFI	CCNGG	1 cut(s)	350
BoxI	GACNNNNGTC	1 cut(s)	278
BpmI	CTGGAG	1 cut(s)	332
BpuEI	CTTGAG	2 cut(s)	176, 413
BsaBI	GATNNNNATC	1 cut(s)	115
BsaHI	GRCGYC	1 cut(s)	285
BsaJI	CCNNGG	4 cut(s)	53, 144, 165, 349
BsaWI	WCCGGW	1 cut(s)	270
BsaXI	ACNNNNNCTCC	4 cut(s)	197, 200, 227, 230
Bse1I	ACTGG	1 cut(s)	319
Bse8I	GATNNNNATC	1 cut(s)	115
BseBI	CCWGG	1 cut(s)	350
BseDI	CCNNGG	4 cut(s)	53, 144, 165, 349
BseGI	GGATG	1 cut(s)	357
BseJI	GATNNNNATC	1 cut(s)	115
BseMII	CTCAG	1 cut(s)	324
BseNI	ACTGG	1 cut(s)	319
BseRI	GAGGAG	3 cut(s)	167, 202, 205
BseXI	GCAGC	1 cut(s)	375
BshFI	GGCC	1 cut(s)	149
BshNI	GGYRCC	1 cut(s)	284
BsiHKAI	GWGCWC	2 cut(s)	162, 333
BsiHKCI	CYCGRG	1 cut(s)	326
BsiSI	CCGG	3 cut(s)	155, 271, 367
BslFI	GGGAC	1 cut(s)	366
BsmFI	GGGAC	1 cut(s)	366
BsnI	GGCC	1 cut(s)	149
BsoBI	CYCGRG	1 cut(s)	326
Bsp1286I	GDGCHC	2 cut(s)	162, 333
Bsp143I	GATC	3 cut(s)	135, 369, 385
BspACI	CCGC	3 cut(s)	234, 294, 361
BspANI	GGCC	1 cut(s)	149
BspCNI	CTCAG	1 cut(s)	323
BspLI	GGNNCC	4 cut(s)	11, 286, 354, 355
BspPI	GGATC	2 cut(s)	377, 393
BspT107I	GGYRCC	1 cut(s)	284
BsrI	ACTGG	1 cut(s)	319
BssECI	CCNNGG	4 cut(s)	53, 144, 165, 349
BssMI	GATC	3 cut(s)	135, 369, 385
BssNI	GRCGYC	1 cut(s)	285
BssT1I	CCWWGG	3 cut(s)	53, 144, 165
Bst2UI	CCWGG	1 cut(s)	350
BstACI	GRCGYC	1 cut(s)	285
BstDEI	CTNAG	1 cut(s)	310
BstF5I	GGATG	1 cut(s)	357
BstH2I	RGCGCY	1 cut(s)	288
BstHHI	GCGC	1 cut(s)	287
BstKTI	GATC	3 cut(s)	138, 372, 388
BstMBI	GATC	3 cut(s)	135, 369, 385
BstMWI	GCNNNNNNNGC	4 cut(s)	233, 256, 265, 293
BstNI	CCWGG	1 cut(s)	350
BstPAI	GACNNNNGTC	1 cut(s)	278
BstSCI	CCNGG	1 cut(s)	348
BstV1I	GCAGC	1 cut(s)	375
BsuRI	GGCC	1 cut(s)	149
BtsCI	GGATG	1 cut(s)	357
BtsI	GCAGTG	1 cut(s)	138
BtsIMutI	CAGTG	3 cut(s)	138, 326, 417
CfoI	GCGC	1 cut(s)	287
Cfr13I	GGNCC	3 cut(s)	10, 273, 353
DdeI	CTNAG	1 cut(s)	310
DinI	GGCGCC	1 cut(s)	286
DpnI	GATC	3 cut(s)	137, 371, 387
DpnII	GATC	3 cut(s)	135, 369, 385
Ecl136II	GAGCTC	2 cut(s)	160, 331
Eco130I	CCWWGG	3 cut(s)	53, 144, 165
Eco24I	GRGCYC	2 cut(s)	162, 333
Eco32I	GATATC	1 cut(s)	61
Eco47I	GGWCC	3 cut(s)	10, 273, 353
Eco53kI	GAGCTC	2 cut(s)	160, 331
Eco57I	CTGAAG	1 cut(s)	111
Eco88I	CYCGRG	1 cut(s)	326
EcoICRI	GAGCTC	2 cut(s)	160, 331
EcoO109I	RGGNCCY	1 cut(s)	353
EcoRII	CCWGG	1 cut(s)	348
EcoRV	GATATC	1 cut(s)	61
EcoT14I	CCWWGG	3 cut(s)	53, 144, 165
EcoT38I	GRGCYC	2 cut(s)	162, 333
EgeI	GGCGCC	1 cut(s)	286
EheI	GGCGCC	1 cut(s)	286
ErhI	CCWWGG	3 cut(s)	53, 144, 165
FaiI	YATR	3 cut(s)	47, 108, 114
FaqI	GGGAC	1 cut(s)	366
FauI	CCCGC	1 cut(s)	241
FbaI	TGATCA	1 cut(s)	135
Fnu4HI	GCNGC	2 cut(s)	294, 364
FokI	GGATG	1 cut(s)	344
FriOI	GRGCYC	2 cut(s)	162, 333
Fsp4HI	GCNGC	2 cut(s)	294, 364
GlaI	GCGC	1 cut(s)	286
GluI	GCNGC	2 cut(s)	294, 364
GsuI	CTGGAG	1 cut(s)	332
HaeII	RGCGCY	1 cut(s)	288
HaeIII	GGCC	1 cut(s)	149
HapII	CCGG	3 cut(s)	155, 271, 367
HhaI	GCGC	1 cut(s)	287
Hin1I	GRCGYC	1 cut(s)	285
Hin6I	GCGC	1 cut(s)	285
HinP1I	GCGC	1 cut(s)	285
HinfI	GANTC	2 cut(s)	209, 404
HpaII	CCGG	3 cut(s)	155, 271, 367
Hpy188I	TCNGA	2 cut(s)	220, 313
Hpy188III	TCNNGA	3 cut(s)	203, 376, 392
Hpy99I	CGWCG	2 cut(s)	189, 293
HpyCH4IV	ACGT	1 cut(s)	184
HpyCH4V	TGCA	1 cut(s)	95
HpyF10VI	GCNNNNNNNGC	4 cut(s)	233, 256, 265, 293
HpyF3I	CTNAG	1 cut(s)	310
HpySE526I	ACGT	1 cut(s)	184
Hsp92I	GRCGYC	1 cut(s)	285
HspAI	GCGC	1 cut(s)	285
KasI	GGCGCC	1 cut(s)	284
KflI	GGGWCCC	1 cut(s)	353
Ksp22I	TGATCA	1 cut(s)	135
Kzo9I	GATC	3 cut(s)	135, 369, 385
LmnI	GCTCC	1 cut(s)	157
LpnPI	CCDG	8 cut(s)	81, 168, 264, 284, 332, 335, 362, 380
Lsp1109I	GCAGC	1 cut(s)	375
MaeII	ACGT	1 cut(s)	184
MalI	GATC	3 cut(s)	137, 371, 387
MboI	GATC	3 cut(s)	135, 369, 385
MboII	GAAGA	2 cut(s)	298, 413
MhlI	GDGCHC	2 cut(s)	162, 333
Mly113I	GGCGCC	1 cut(s)	285
MlyI	GAGTC	1 cut(s)	203
MnlI	CCTC	7 cut(s)	75, 188, 200, 223, 226, 311, 388
MseI	TTAA	1 cut(s)	264
MslI	CAYNNNNRTG	1 cut(s)	377
MspI	CCGG	3 cut(s)	155, 271, 367
MspR9I	CCNGG	1 cut(s)	350
MvaI	CCWGG	1 cut(s)	350
MwoI	GCNNNNNNNGC	4 cut(s)	233, 256, 265, 293
NarI	GGCGCC	1 cut(s)	285
NdeII	GATC	3 cut(s)	135, 369, 385
NlaIV	GGNNCC	4 cut(s)	11, 286, 354, 355
PaeR7I	CTCGAG	1 cut(s)	326
PfeI	GAWTC	1 cut(s)	404
PkrI	GCNGC	2 cut(s)	295, 365
PleI	GAGTC	1 cut(s)	203
PluTI	GGCGCC	1 cut(s)	288
PpsI	GAGTC	1 cut(s)	203
PpuMI	RGGWCCY	1 cut(s)	353
PshAI	GACNNNNGTC	1 cut(s)	278
Psp124BI	GAGCTC	2 cut(s)	162, 333
Psp5II	RGGWCCY	1 cut(s)	353
Psp6I	CCWGG	1 cut(s)	348
PspGI	CCWGG	1 cut(s)	348
PspN4I	GGNNCC	4 cut(s)	11, 286, 354, 355
PspPI	GGNCC	3 cut(s)	10, 273, 353
PspPPI	RGGWCCY	1 cut(s)	353
PspXI	VCTCGAGB	1 cut(s)	326
RseI	CAYNNNNRTG	1 cut(s)	377
SacI	GAGCTC	2 cut(s)	162, 333
SaqAI	TTAA	1 cut(s)	264
SatI	GCNGC	2 cut(s)	294, 364
Sau3AI	GATC	3 cut(s)	135, 369, 385
Sau96I	GGNCC	3 cut(s)	10, 273, 353
SchI	GAGTC	1 cut(s)	203
ScrFI	CCNGG	1 cut(s)	350
SduI	GDGCHC	2 cut(s)	162, 333
SfoI	GGCGCC	1 cut(s)	286
Sfr274I	CTCGAG	1 cut(s)	326
SinI	GGWCC	3 cut(s)	10, 273, 353
SlaI	CTCGAG	1 cut(s)	326
SmiMI	CAYNNNNRTG	1 cut(s)	377
SmlI	CTYRAG	3 cut(s)	191, 326, 392
SmoI	CTYRAG	3 cut(s)	191, 326, 392
SsiI	CCGC	3 cut(s)	234, 294, 361
SspDI	GGCGCC	1 cut(s)	284
SspI	AATATT	1 cut(s)	243
SstI	GAGCTC	2 cut(s)	162, 333
StyD4I	CCNGG	1 cut(s)	348
StyI	CCWWGG	3 cut(s)	53, 144, 165
TaiI	ACGT	1 cut(s)	187
TaqI	TCGA	1 cut(s)	327
TauI	GCSGC	1 cut(s)	296
TfiI	GAWTC	1 cut(s)	404
Tru1I	TTAA	1 cut(s)	264
Tru9I	TTAA	1 cut(s)	264
TscAI	CASTG	3 cut(s)	138, 326, 417
TseI	GCWGC	1 cut(s)	363
TspRI	CASTG	3 cut(s)	138, 326, 417
VpaK11BI	GGWCC	3 cut(s)	10, 273, 353
XhoI	CTCGAG	1 cut(s)	326

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.