RchiOBHm_Chr7g0224701

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Forward (+)
46990394 .. 46992024
1631 bp
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UTR
Exon/CDS
Intron
PRQ20120

Sequence Viewer

Length: 219 bp
ATGATAATATTTTTATGTGATGCTACTCATAACAATAATGCAGGTTCTTCACATGCACAAAGCATTGCAGCTATTGATGGTCAGGATTGGAGCAACCAGTTTGAAGAATCATATTCAGATTACATTGGAGAGTTGGAGTTTTCTTTTGACGATGTGTACGATCATTACCTACTCCATTCTCGTGTTATCAATGATTTACAGCAAGTGACCATTGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

72

Amino Acids

8.23

Weight (kDa)

4.06

Isoelectric Point (pI)

49.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 32
AfaI GTAC 1 cut(s) 158
AgsI TTSAA 1 cut(s) 104
AluBI AGCT 1 cut(s) 71
AluI AGCT 1 cut(s) 71
ApeKI GCWGC 1 cut(s) 68
BauI CACGAG 1 cut(s) 180
BbvI GCAGC 1 cut(s) 80
BccI CCATC 1 cut(s) 71
BfaI CTAG 1 cut(s) 217
BfuAI ACCTGC 1 cut(s) 32
BisI GCNGC 1 cut(s) 69
BlsI GCNGC 1 cut(s) 70
BmsI GCATC 1 cut(s) 10
Bse1I ACTGG 1 cut(s) 97
Bse3DI GCAATG 1 cut(s) 63
BseMI GCAATG 1 cut(s) 63
BseNI ACTGG 1 cut(s) 97
BseXI GCAGC 1 cut(s) 80
Bsp143I GATC 1 cut(s) 160
BspMI ACCTGC 1 cut(s) 32
BsrDI GCAATG 1 cut(s) 63
BsrI ACTGG 1 cut(s) 97
BssMI GATC 1 cut(s) 160
BssSI CACGAG 1 cut(s) 180
Bst2BI CACGAG 1 cut(s) 180
BstKTI GATC 1 cut(s) 163
BstMBI GATC 1 cut(s) 160
BstNSI RCATGY 1 cut(s) 56
BstV1I GCAGC 1 cut(s) 80
BveI ACCTGC 1 cut(s) 32
Csp6I GTAC 1 cut(s) 157
CviAII CATG 1 cut(s) 53
CviJI RGCY 1 cut(s) 71
CviKI_1 RGCY 1 cut(s) 71
CviQI GTAC 1 cut(s) 157
DpnI GATC 1 cut(s) 162
DpnII GATC 1 cut(s) 160
FaeI CATG 1 cut(s) 56
FaiI YATR 4 cut(s) 16, 30, 54, 112
FatI CATG 1 cut(s) 52
Fnu4HI GCNGC 1 cut(s) 69
Fsp4HI GCNGC 1 cut(s) 69
FspBI CTAG 1 cut(s) 217
FspEI CC 9 cut(s) 27, 63, 68, 73, 110, 111, 119, 182, 188
GluI GCNGC 1 cut(s) 69
Hin1II CATG 1 cut(s) 56
HinfI GANTC 1 cut(s) 107
Hpy166II GTNNAC 1 cut(s) 157
Hpy188I TCNGA 1 cut(s) 118
Hpy188III TCNNGA 1 cut(s) 83
Hpy8I GTNNAC 1 cut(s) 157
HpyCH4V TGCA 3 cut(s) 41, 56, 68
Hsp92II CATG 1 cut(s) 56
Kzo9I GATC 1 cut(s) 160
LmnI GCTCC 1 cut(s) 90
LpnPI CCDG 3 cut(s) 27, 68, 110
Lsp1109I GCAGC 1 cut(s) 80
LweI GCATC 1 cut(s) 10
MaeI CTAG 1 cut(s) 217
MaeIII GTNAC 1 cut(s) 205
MalI GATC 1 cut(s) 162
MboI GATC 1 cut(s) 160
MboII GAAGA 2 cut(s) 39, 116
MmeI TCCRAC 1 cut(s) 114
MslI CAYNNNNRTG 1 cut(s) 180
NdeII GATC 1 cut(s) 160
NlaIII CATG 1 cut(s) 56
NmuCI GTSAC 1 cut(s) 205
NspI RCATGY 1 cut(s) 56
PcsI WCGNNNNNNNCGW 1 cut(s) 156
PfeI GAWTC 1 cut(s) 107
PkrI GCNGC 1 cut(s) 70
RsaI GTAC 1 cut(s) 158
RsaNI GTAC 1 cut(s) 157
RseI CAYNNNNRTG 1 cut(s) 180
SatI GCNGC 1 cut(s) 69
Sau3AI GATC 1 cut(s) 160
SetI ASST 3 cut(s) 46, 73, 171
SfaNI GCATC 1 cut(s) 10
SgeI CNNG 7 cut(s) 54, 65, 95, 109, 192, 194, 215
SmiMI CAYNNNNRTG 1 cut(s) 180
SspI AATATT 1 cut(s) 9
SspMI CTAG 1 cut(s) 217
TfiI GAWTC 1 cut(s) 107
TseFI GTSAC 1 cut(s) 205
TseI GCWGC 1 cut(s) 68
Tsp45I GTSAC 1 cut(s) 205
XceI RCATGY 1 cut(s) 56
XspI CTAG 1 cut(s) 217
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.