Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0015536

Physical Location & Seq

Genomic Coordinates Forward (+)

33057762 .. 33059154

Gene Structure 1393 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000013553

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGGCTCGTGGAGGAGGAGAATGGGCAATTCATAAAGTGGTTAGAGGGAAATGGGCTTGTTCTTACAAGAAGACCACTCTCATCGTTTGCTGCATTAACATTTTCGTTGCTCTCTATGTTCTTCGCTCTCTCCACGCTTCTCTCTACATCTATTCCGACAGAGATTCACGTCTCAGTAGGGATAATGAGCTCCATTCCTCCATCTCCACCCACCTCCTGTCCCTCAACCCTCATATCAACACCTTGGCCTTGTCGGAGCTCTACAAGGTCGTTCTCCTCTTACCTCGCCTCAAGCCCAATCCCGACAACTCCTCCTCCGCTGCCGCTTCTCCCGCCGAAACATTGAAGCCCGATTGGCTTCCCAAGCACCGGACCAAAGTCCCCGTTGTCACCGCCTACCTCATCTTCTCAGATCGGGTCTCCAACGATCAGACCCAGTGGCTCGAGCTCTGCTTTGAAATAGACAATCTACAGGGACTAATCCACAGCCGGAGCATCAAATTGGTCCTCCTCCTCGTCCATTCCAACTCTACTGGTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00910 map00910

Pfam Domains

Protein Families

Foie-gras_1 Gryzun-like

Protein Analysis

181

Amino Acids

20.23

Weight (kDa)

9.25

Isoelectric Point (pI)

35.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015536)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g09871 FvH4_2g09871 FvH4_2g14951
rosa_chinensis	RchiOBHm_Chr7g0224701
rosa_laevigata	RLG00000001816 RLG00000013553 RLG00000015904 RLG00000023570 RLG00000031249 RLG00000034529
rosa_multiflora	Rmu_sc0001551.1_g000015 Rmu_sc0012351.1_g000012
rosa_roxburghii	Rroxscaffold_3G00233850
rosa_samantha	Rh3DG202300 Rh7CG396800 Rh7DG374900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	318, 324, 333, 393
AfiI	CCNNNNNNNGG	1 cut(s)	369
AgsI	TTSAA	2 cut(s)	346, 458
AjiI	CACGTC	1 cut(s)	170
AluBI	AGCT	3 cut(s)	190, 259, 448
AluI	AGCT	3 cut(s)	190, 259, 448
Alw21I	GWGCWC	3 cut(s)	192, 261, 450
Alw26I	GTCTC	2 cut(s)	176, 424
Ama87I	CYCGRG	1 cut(s)	443
AoxI	GGCC	1 cut(s)	246
ApeKI	GCWGC	2 cut(s)	90, 320
AspS9I	GGNCC	2 cut(s)	372, 505
AsuHPI	GGTGA	1 cut(s)	382
AvaI	CYCGRG	1 cut(s)	443
AvaII	GGWCC	2 cut(s)	372, 505
BanII	GRGCYC	3 cut(s)	192, 261, 450
BauI	CACGAG	1 cut(s)	6
BbsI	GAAGAC	1 cut(s)	77
Bbv12I	GWGCWC	3 cut(s)	192, 261, 450
BbvI	GCAGC	2 cut(s)	77, 307
BccI	CCATC	1 cut(s)	209
BcoDI	GTCTC	2 cut(s)	176, 424
BfmI	CTRYAG	1 cut(s)	470
BglI	GCCNNNNNGGC	1 cut(s)	355
BisI	GCNGC	3 cut(s)	91, 321, 324
BlsI	GCNGC	3 cut(s)	92, 322, 325
Bme18I	GGWCC	2 cut(s)	372, 505
BmeT110I	CYCGRG	1 cut(s)	443
BmgBI	CACGTC	1 cut(s)	170
BmgT120I	GGNCC	2 cut(s)	372, 505
BmrI	ACTGGG	1 cut(s)	430
BmsI	GCATC	1 cut(s)	504
BmuI	ACTGGG	1 cut(s)	430
BoxI	GACNNNNGTC	1 cut(s)	377
BpiI	GAAGAC	1 cut(s)	77
BpuEI	CTTGAG	1 cut(s)	275
BsaI	GGTCTC	1 cut(s)	424
BsaJI	CCNNGG	1 cut(s)	243
BsaWI	WCCGGW	1 cut(s)	369
BsaXI	ACNNNNNCTCC	4 cut(s)	296, 299, 326, 329
Bsc4I	CCNNNNNNNGG	1 cut(s)	369
Bse1I	ACTGG	2 cut(s)	436, 538
BseDI	CCNNGG	1 cut(s)	243
BseLI	CCNNNNNNNGG	1 cut(s)	369
BseMII	CTCAG	2 cut(s)	187, 423
BseNI	ACTGG	2 cut(s)	436, 538
BseRI	GAGGAG	7 cut(s)	27, 30, 266, 301, 304, 500, 503
BseXI	GCAGC	2 cut(s)	77, 307
BshFI	GGCC	1 cut(s)	248
BsiHKAI	GWGCWC	3 cut(s)	192, 261, 450
BsiHKCI	CYCGRG	1 cut(s)	443
BsiSI	CCGG	2 cut(s)	370, 490
BslFI	GGGAC	3 cut(s)	205, 365, 489
BslI	CCNNNNNNNGG	1 cut(s)	369
BsmAI	GTCTC	2 cut(s)	176, 424
BsmBI	CGTCTC	1 cut(s)	176
BsmFI	GGGAC	3 cut(s)	205, 365, 489
BsnI	GGCC	1 cut(s)	248
Bso31I	GGTCTC	1 cut(s)	424
BsoBI	CYCGRG	1 cut(s)	443
Bsp1286I	GDGCHC	3 cut(s)	192, 261, 450
Bsp143I	GATC	2 cut(s)	412, 427
BspACI	CCGC	4 cut(s)	318, 324, 333, 393
BspANI	GGCC	1 cut(s)	248
BspCNI	CTCAG	2 cut(s)	186, 422
BspTNI	GGTCTC	1 cut(s)	424
BsrI	ACTGG	2 cut(s)	436, 538
BssECI	CCNNGG	1 cut(s)	243
BssMI	GATC	2 cut(s)	412, 427
BssSI	CACGAG	1 cut(s)	6
BssT1I	CCWWGG	1 cut(s)	243
Bst2BI	CACGAG	1 cut(s)	6
BstDEI	CTNAG	2 cut(s)	173, 409
BstKTI	GATC	2 cut(s)	415, 430
BstMAI	GTCTC	2 cut(s)	176, 424
BstMBI	GATC	2 cut(s)	412, 427
BstMWI	GCNNNNNNNGC	3 cut(s)	332, 355, 364
BstPAI	GACNNNNGTC	1 cut(s)	377
BstSFI	CTRYAG	1 cut(s)	470
BstV1I	GCAGC	2 cut(s)	77, 307
BstV2I	GAAGAC	1 cut(s)	77
BsuRI	GGCC	1 cut(s)	248
BtrI	CACGTC	1 cut(s)	170
BtsIMutI	CAGTG	1 cut(s)	443
Cfr13I	GGNCC	2 cut(s)	372, 505
DdeI	CTNAG	2 cut(s)	173, 409
DpnI	GATC	2 cut(s)	414, 429
DpnII	GATC	2 cut(s)	412, 427
Ecl136II	GAGCTC	3 cut(s)	190, 259, 448
Eco130I	CCWWGG	1 cut(s)	243
Eco24I	GRGCYC	3 cut(s)	192, 261, 450
Eco31I	GGTCTC	1 cut(s)	424
Eco47I	GGWCC	2 cut(s)	372, 505
Eco53kI	GAGCTC	3 cut(s)	190, 259, 448
Eco88I	CYCGRG	1 cut(s)	443
EcoICRI	GAGCTC	3 cut(s)	190, 259, 448
EcoT14I	CCWWGG	1 cut(s)	243
EcoT38I	GRGCYC	3 cut(s)	192, 261, 450
ErhI	CCWWGG	1 cut(s)	243
Esp3I	CGTCTC	1 cut(s)	176
FaiI	YATR	3 cut(s)	33, 117, 234
FaqI	GGGAC	3 cut(s)	205, 365, 489
FauI	CCCGC	1 cut(s)	340
Fnu4HI	GCNGC	3 cut(s)	91, 321, 324
FriOI	GRGCYC	3 cut(s)	192, 261, 450
Fsp4HI	GCNGC	3 cut(s)	91, 321, 324
GluI	GCNGC	3 cut(s)	91, 321, 324
HaeIII	GGCC	1 cut(s)	248
HapII	CCGG	2 cut(s)	370, 490
HinfI	GANTC	1 cut(s)	164
HpaII	CCGG	2 cut(s)	370, 490
HphI	GGTGA	1 cut(s)	382
Hpy188I	TCNGA	4 cut(s)	157, 256, 412, 432
Hpy188III	TCNNGA	1 cut(s)	302
HpyCH4IV	ACGT	1 cut(s)	169
HpyCH4V	TGCA	1 cut(s)	93
HpyF10VI	GCNNNNNNNGC	3 cut(s)	332, 355, 364
HpyF3I	CTNAG	2 cut(s)	173, 409
HpySE526I	ACGT	1 cut(s)	169
Kzo9I	GATC	2 cut(s)	412, 427
LmnI	GCTCC	3 cut(s)	195, 256, 492
LpnPI	CCDG	6 cut(s)	230, 383, 449, 458, 503, 519
Lsp1109I	GCAGC	2 cut(s)	77, 307
LweI	GCATC	1 cut(s)	504
MaeII	ACGT	1 cut(s)	169
MaeIII	GTNAC	1 cut(s)	388
MalI	GATC	2 cut(s)	414, 429
MboI	GATC	2 cut(s)	412, 427
MboII	GAAGA	3 cut(s)	82, 113, 397
MhlI	GDGCHC	3 cut(s)	192, 261, 450
MluCI	AATT	2 cut(s)	27, 500
MmeI	TCCRAC	3 cut(s)	180, 234, 447
MseI	TTAA	1 cut(s)	96
MspA1I	CMGCKG	1 cut(s)	320
MspI	CCGG	2 cut(s)	370, 490
MwoI	GCNNNNNNNGC	3 cut(s)	332, 355, 364
NdeII	GATC	2 cut(s)	412, 427
NmuCI	GTSAC	1 cut(s)	388
PaeR7I	CTCGAG	1 cut(s)	443
PfeI	GAWTC	1 cut(s)	164
PkrI	GCNGC	3 cut(s)	92, 322, 325
PshAI	GACNNNNGTC	1 cut(s)	377
Psp124BI	GAGCTC	3 cut(s)	192, 261, 450
PspPI	GGNCC	2 cut(s)	372, 505
PspXI	VCTCGAGB	1 cut(s)	443
SacI	GAGCTC	3 cut(s)	192, 261, 450
SaqAI	TTAA	1 cut(s)	96
SatI	GCNGC	3 cut(s)	91, 321, 324
Sau3AI	GATC	2 cut(s)	412, 427
Sau96I	GGNCC	2 cut(s)	372, 505
SduI	GDGCHC	3 cut(s)	192, 261, 450
SetI	ASST	9 cut(s)	172, 192, 216, 245, 261, 270, 286, 402, 450
SfaNI	GCATC	1 cut(s)	504
SfcI	CTRYAG	1 cut(s)	470
Sfr274I	CTCGAG	1 cut(s)	443
SinI	GGWCC	2 cut(s)	372, 505
SlaI	CTCGAG	1 cut(s)	443
SmlI	CTYRAG	2 cut(s)	290, 443
SmoI	CTYRAG	2 cut(s)	290, 443
Sse9I	AATT	2 cut(s)	27, 500
SsiI	CCGC	4 cut(s)	318, 324, 333, 393
SstI	GAGCTC	3 cut(s)	192, 261, 450
StyI	CCWWGG	1 cut(s)	243
TaiI	ACGT	1 cut(s)	172
TaqI	TCGA	1 cut(s)	444
TasI	AATT	2 cut(s)	27, 500
TauI	GCSGC	1 cut(s)	326
TfiI	GAWTC	1 cut(s)	164
Tru1I	TTAA	1 cut(s)	96
Tru9I	TTAA	1 cut(s)	96
TscAI	CASTG	1 cut(s)	443
TseFI	GTSAC	1 cut(s)	388
TseI	GCWGC	2 cut(s)	90, 320
Tsp45I	GTSAC	1 cut(s)	388
TspDTI	ATGAA	1 cut(s)	20
TspRI	CASTG	1 cut(s)	443
VpaK11BI	GGWCC	2 cut(s)	372, 505
XhoI	CTCGAG	1 cut(s)	443

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.