Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0015536

Physical Location & Seq

Genomic Coordinates Reverse (-)

18420255 .. 18420825

Gene Structure 571 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG202300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGCACTGGCACTGCCGGAATTCATGGCGTCCGGCATCGGAAATACGGAGCTCAGAGCTCCATTCCTCCATCCCCACCCACCTCATCTCCCTCGATGCTCAGATCAACACCTTGGCCTTGCCGGAGCTCTCCAAGGTCGTTCTCCTCTTACCTCGCCTTAAGCCCAATCCCAGCGACTCCTCCTCCGATGTCGCTTCTCTCGCCGAAATATTGAAGCCCGATTGCTTTCCAAGCATCGGACCAAAGTCCCAACCGTCTCTGCCTACCTCATCTTCTCAGATCGGGTCTCCAACGATCCGGCCCAGTGGCTCGAGCTCTGCTTTGAAAATCTTCTTTGCACCTAGAGACTGGATTTTTCTGGGTTTTTCTTCAAGTTTTGATCTGGGCTCGGAGTTTGATGAAGGTTGGAATCGGAGATTTTGGTTCATTAAGGGATTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00910 map00910

Pfam Domains

Protein Families

Foie-gras_1 Gryzun-like

Protein Analysis

146

Amino Acids

16.16

Weight (kDa)

7.86

Isoelectric Point (pI)

65.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015536)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g09871 FvH4_2g09871 FvH4_2g14951
rosa_chinensis	RchiOBHm_Chr7g0224701
rosa_laevigata	RLG00000001816 RLG00000013553 RLG00000015904 RLG00000023570 RLG00000031249 RLG00000034529
rosa_multiflora	Rmu_sc0001551.1_g000015 Rmu_sc0012351.1_g000012
rosa_roxburghii	Rroxscaffold_3G00233850
rosa_samantha	Rh3DG202300 Rh7CG396800 Rh7DG374900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	289
AcsI	RAATTY	1 cut(s)	19
AcyI	GRCGYC	1 cut(s)	28
AfiI	CCNNNNNNNGG	1 cut(s)	236
AflII	CTTAAG	1 cut(s)	158
AgsI	TTSAA	3 cut(s)	214, 325, 372
AluBI	AGCT	4 cut(s)	51, 58, 127, 315
AluI	AGCT	4 cut(s)	51, 58, 127, 315
Alw21I	GWGCWC	4 cut(s)	53, 60, 129, 317
Alw26I	GTCTC	3 cut(s)	261, 291, 339
AlwI	GGATC	1 cut(s)	289
Ama87I	CYCGRG	1 cut(s)	310
AoxI	GGCC	2 cut(s)	114, 299
ApoI	RAATTY	1 cut(s)	19
Asp700I	GAANNNNTTC	1 cut(s)	329
AspS9I	GGNCC	2 cut(s)	239, 300
AvaI	CYCGRG	1 cut(s)	310
AvaII	GGWCC	1 cut(s)	239
BanII	GRGCYC	5 cut(s)	53, 60, 129, 317, 389
Bbv12I	GWGCWC	4 cut(s)	53, 60, 129, 317
BccI	CCATC	1 cut(s)	77
BcoDI	GTCTC	3 cut(s)	261, 291, 339
BfaI	CTAG	1 cut(s)	342
BfrI	CTTAAG	1 cut(s)	158
Bme18I	GGWCC	1 cut(s)	239
BmeT110I	CYCGRG	1 cut(s)	310
BmgT120I	GGNCC	2 cut(s)	239, 300
BmrI	ACTGGG	1 cut(s)	297
BmsI	GCATC	3 cut(s)	44, 85, 243
BmuI	ACTGGG	1 cut(s)	297
BoxI	GACNNNNGTC	1 cut(s)	244
BsaHI	GRCGYC	1 cut(s)	28
BsaI	GGTCTC	1 cut(s)	291
BsaJI	CCNNGG	2 cut(s)	111, 132
BsaXI	ACNNNNNCTCC	4 cut(s)	71, 101, 167, 197
Bsc4I	CCNNNNNNNGG	1 cut(s)	236
Bse1I	ACTGG	3 cut(s)	11, 303, 353
BseDI	CCNNGG	2 cut(s)	111, 132
BseGI	GGATG	1 cut(s)	69
BseLI	CCNNNNNNNGG	1 cut(s)	236
BseMII	CTCAG	3 cut(s)	66, 113, 290
BseNI	ACTGG	3 cut(s)	11, 303, 353
BseRI	GAGGAG	3 cut(s)	134, 169, 172
BseYI	CCCAGC	1 cut(s)	170
BshFI	GGCC	2 cut(s)	116, 301
BsiHKAI	GWGCWC	4 cut(s)	53, 60, 129, 317
BsiHKCI	CYCGRG	1 cut(s)	310
BsiSI	CCGG	4 cut(s)	16, 32, 122, 298
BslFI	GGGAC	1 cut(s)	232
BslI	CCNNNNNNNGG	1 cut(s)	236
BsmAI	GTCTC	3 cut(s)	261, 291, 339
BsmBI	CGTCTC	1 cut(s)	261
BsmFI	GGGAC	1 cut(s)	232
BsnI	GGCC	2 cut(s)	116, 301
Bso31I	GGTCTC	1 cut(s)	291
BsoBI	CYCGRG	1 cut(s)	310
Bsp1286I	GDGCHC	5 cut(s)	53, 60, 129, 317, 389
Bsp143I	GATC	4 cut(s)	102, 279, 294, 379
BspANI	GGCC	2 cut(s)	116, 301
BspCNI	CTCAG	3 cut(s)	65, 112, 289
BspPI	GGATC	1 cut(s)	289
BspTI	CTTAAG	1 cut(s)	158
BspTNI	GGTCTC	1 cut(s)	291
BsrI	ACTGG	3 cut(s)	11, 303, 353
BssECI	CCNNGG	2 cut(s)	111, 132
BssMI	GATC	4 cut(s)	102, 279, 294, 379
BssNI	GRCGYC	1 cut(s)	28
BssT1I	CCWWGG	2 cut(s)	111, 132
Bst4CI	ACNGT	1 cut(s)	255
BstACI	GRCGYC	1 cut(s)	28
BstAFI	CTTAAG	1 cut(s)	158
BstDEI	CTNAG	3 cut(s)	52, 99, 276
BstF5I	GGATG	1 cut(s)	69
BstKTI	GATC	4 cut(s)	105, 282, 297, 382
BstMAI	GTCTC	3 cut(s)	261, 291, 339
BstMBI	GATC	4 cut(s)	102, 279, 294, 379
BstMWI	GCNNNNNNNGC	2 cut(s)	200, 231
BstPAI	GACNNNNGTC	1 cut(s)	244
BsuRI	GGCC	2 cut(s)	116, 301
BtsCI	GGATG	1 cut(s)	69
BtsI	GCAGTG	1 cut(s)	10
BtsIMutI	CAGTG	3 cut(s)	4, 10, 310
Cfr13I	GGNCC	2 cut(s)	239, 300
CseI	GACGC	1 cut(s)	17
CviAII	CATG	1 cut(s)	24
DdeI	CTNAG	3 cut(s)	52, 99, 276
DpnI	GATC	4 cut(s)	104, 281, 296, 381
DpnII	GATC	4 cut(s)	102, 279, 294, 379
Ecl136II	GAGCTC	4 cut(s)	51, 58, 127, 315
Eco130I	CCWWGG	2 cut(s)	111, 132
Eco24I	GRGCYC	5 cut(s)	53, 60, 129, 317, 389
Eco31I	GGTCTC	1 cut(s)	291
Eco47I	GGWCC	1 cut(s)	239
Eco53kI	GAGCTC	4 cut(s)	51, 58, 127, 315
Eco88I	CYCGRG	1 cut(s)	310
EcoICRI	GAGCTC	4 cut(s)	51, 58, 127, 315
EcoRI	GAATTC	1 cut(s)	19
EcoT14I	CCWWGG	2 cut(s)	111, 132
EcoT38I	GRGCYC	5 cut(s)	53, 60, 129, 317, 389
ErhI	CCWWGG	2 cut(s)	111, 132
Esp3I	CGTCTC	1 cut(s)	261
FaeI	CATG	1 cut(s)	27
FaiI	YATR	2 cut(s)	25, 439
FaqI	GGGAC	1 cut(s)	232
FatI	CATG	1 cut(s)	23
FokI	GGATG	1 cut(s)	56
FriOI	GRGCYC	5 cut(s)	53, 60, 129, 317, 389
FspBI	CTAG	1 cut(s)	342
GsaI	CCCAGC	1 cut(s)	174
HaeIII	GGCC	2 cut(s)	116, 301
HapII	CCGG	4 cut(s)	16, 32, 122, 298
HgaI	GACGC	1 cut(s)	17
Hin1I	GRCGYC	1 cut(s)	28
Hin1II	CATG	1 cut(s)	27
HinfI	GANTC	2 cut(s)	176, 409
HpaII	CCGG	4 cut(s)	16, 32, 122, 298
Hpy188I	TCNGA	8 cut(s)	40, 55, 102, 187, 239, 279, 391, 414
HpyAV	CCTTC	1 cut(s)	395
HpyCH4III	ACNGT	1 cut(s)	255
HpyCH4V	TGCA	2 cut(s)	4, 338
HpyF10VI	GCNNNNNNNGC	2 cut(s)	200, 231
HpyF3I	CTNAG	3 cut(s)	52, 99, 276
Hsp92I	GRCGYC	1 cut(s)	28
Hsp92II	CATG	1 cut(s)	27
Kzo9I	GATC	4 cut(s)	102, 279, 294, 379
LmnI	GCTCC	3 cut(s)	48, 63, 124
LpnPI	CCDG	9 cut(s)	29, 45, 135, 184, 311, 316, 334, 344, 368
LweI	GCATC	3 cut(s)	44, 85, 243
MaeI	CTAG	1 cut(s)	342
MalI	GATC	4 cut(s)	104, 281, 296, 381
MboI	GATC	4 cut(s)	102, 279, 294, 379
MboII	GAAGA	3 cut(s)	264, 322, 360
MhlI	GDGCHC	5 cut(s)	53, 60, 129, 317, 389
MluCI	AATT	1 cut(s)	19
MlyI	GAGTC	1 cut(s)	170
MmeI	TCCRAC	2 cut(s)	314, 386
MnlI	CCTC	8 cut(s)	76, 92, 101, 155, 162, 190, 193, 277
MroXI	GAANNNNTTC	1 cut(s)	329
MseI	TTAA	2 cut(s)	159, 429
MspCI	CTTAAG	1 cut(s)	158
MspI	CCGG	4 cut(s)	16, 32, 122, 298
MwoI	GCNNNNNNNGC	2 cut(s)	200, 231
NdeII	GATC	4 cut(s)	102, 279, 294, 379
NlaIII	CATG	1 cut(s)	27
PaeR7I	CTCGAG	1 cut(s)	310
PdmI	GAANNNNTTC	1 cut(s)	329
PfeI	GAWTC	1 cut(s)	409
PleI	GAGTC	1 cut(s)	170
PpsI	GAGTC	1 cut(s)	170
PshAI	GACNNNNGTC	1 cut(s)	244
Psp124BI	GAGCTC	4 cut(s)	53, 60, 129, 317
PspFI	CCCAGC	1 cut(s)	170
PspPI	GGNCC	2 cut(s)	239, 300
PspXI	VCTCGAGB	1 cut(s)	310
SacI	GAGCTC	4 cut(s)	53, 60, 129, 317
SaqAI	TTAA	2 cut(s)	159, 429
Sau3AI	GATC	4 cut(s)	102, 279, 294, 379
Sau96I	GGNCC	2 cut(s)	239, 300
SchI	GAGTC	1 cut(s)	170
SduI	GDGCHC	5 cut(s)	53, 60, 129, 317, 389
SfaNI	GCATC	3 cut(s)	44, 85, 243
Sfr274I	CTCGAG	1 cut(s)	310
SinI	GGWCC	1 cut(s)	239
SlaI	CTCGAG	1 cut(s)	310
SmlI	CTYRAG	2 cut(s)	158, 310
SmoI	CTYRAG	2 cut(s)	158, 310
Sse9I	AATT	1 cut(s)	19
SspI	AATATT	1 cut(s)	210
SspMI	CTAG	1 cut(s)	342
SstI	GAGCTC	4 cut(s)	53, 60, 129, 317
StyI	CCWWGG	2 cut(s)	111, 132
TaaI	ACNGT	1 cut(s)	255
TaqI	TCGA	2 cut(s)	93, 311
TasI	AATT	1 cut(s)	19
TfiI	GAWTC	1 cut(s)	409
Tru1I	TTAA	2 cut(s)	159, 429
Tru9I	TTAA	2 cut(s)	159, 429
TscAI	CASTG	2 cut(s)	17, 310
TspDTI	ATGAA	3 cut(s)	12, 414, 415
TspGWI	ACGGA	1 cut(s)	61
TspRI	CASTG	2 cut(s)	17, 310
Vha464I	CTTAAG	1 cut(s)	158
VpaK11BI	GGWCC	1 cut(s)	239
XapI	RAATTY	1 cut(s)	19
XhoI	CTCGAG	1 cut(s)	310
XmnI	GAANNNNTTC	1 cut(s)	329
XspI	CTAG	1 cut(s)	342

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.