Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0015536

Physical Location & Seq

Genomic Coordinates Reverse (-)

3363824 .. 3364493

Gene Structure 670 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031249

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGTTAAGAGGAAATATGGAGCTCAGAGCTCCATTCCTCCATTCCTCCATCCCCACCGACCTCATCTCCCTCGACGCTCAGATCAACACCTTGGCCTTGCCGGAGCTCTCCAAGGTCGTTCTCCTCTTACCTCGCCTTAAGCCCAATCCCGGCGACTCCTCCTCCACTGCCGCTTCTCCCGCTGAAATATTGAAGCCCGATTGGCTTTCCAAGCATCGGACCAAAGTCCCAACCGTCTCAGCCTACCTCATCTTCTCAGATCAGATCTGGGCTTGGAGTTTGATGAAGGTTAGAATCGGAGATTTTGGTTCATTGAGGGATTATAGTGAGAGAATGAGGGTTCGGAGCAGAGGAGGAGAAGAAGATGATGAGGAGCAGAGTGAACATACTGTGTCGTCTTCGTCTTCTTCTGAAAACCGGAAAAAAAAATTTGTTTGTATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00910 map00910

Pfam Domains

Protein Families

Foie-gras_1 Gryzun-like

Protein Analysis

148

Amino Acids

16.5

Weight (kDa)

7.89

Isoelectric Point (pI)

49.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015536)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g09871 FvH4_2g09871 FvH4_2g14951
rosa_chinensis	RchiOBHm_Chr7g0224701
rosa_laevigata	RLG00000001816 RLG00000013553 RLG00000015904 RLG00000023570 RLG00000031249 RLG00000034529
rosa_multiflora	Rmu_sc0001551.1_g000015 Rmu_sc0012351.1_g000012
rosa_roxburghii	Rroxscaffold_3G00233850
rosa_samantha	Rh3DG202300 Rh7CG396800 Rh7DG374900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	171, 180
AcsI	RAATTY	1 cut(s)	428
AfiI	CCNNNNNNNGG	2 cut(s)	149, 216
AflII	CTTAAG	1 cut(s)	137
AgsI	TTSAA	1 cut(s)	193
AluBI	AGCT	3 cut(s)	22, 29, 106
AluI	AGCT	3 cut(s)	22, 29, 106
Alw21I	GWGCWC	3 cut(s)	24, 31, 108
Alw26I	GTCTC	1 cut(s)	241
AoxI	GGCC	1 cut(s)	93
ApoI	RAATTY	1 cut(s)	428
AspS9I	GGNCC	1 cut(s)	219
AsuC2I	CCSGG	1 cut(s)	150
AvaII	GGWCC	1 cut(s)	219
BanII	GRGCYC	3 cut(s)	24, 31, 108
BbsI	GAAGAC	2 cut(s)	390, 396
Bbv12I	GWGCWC	3 cut(s)	24, 31, 108
BccI	CCATC	1 cut(s)	56
BcnI	CCSGG	1 cut(s)	150
BcoDI	GTCTC	1 cut(s)	241
BfrI	CTTAAG	1 cut(s)	137
BglI	GCCNNNNNGGC	1 cut(s)	202
BglII	AGATCT	1 cut(s)	264
BisI	GCNGC	1 cut(s)	171
BlsI	GCNGC	1 cut(s)	172
Bme1390I	CCNGG	1 cut(s)	150
Bme18I	GGWCC	1 cut(s)	219
BmgT120I	GGNCC	1 cut(s)	219
BmrFI	CCNGG	1 cut(s)	150
BmsI	GCATC	1 cut(s)	223
BoxI	GACNNNNGTC	1 cut(s)	224
BpiI	GAAGAC	2 cut(s)	390, 396
BpuMI	CCSGG	1 cut(s)	150
BsaJI	CCNNGG	2 cut(s)	90, 111
BsaWI	WCCGGW	1 cut(s)	417
BsaXI	ACNNNNNCTCC	4 cut(s)	50, 80, 146, 176
Bsc4I	CCNNNNNNNGG	2 cut(s)	149, 216
BseDI	CCNNGG	2 cut(s)	90, 111
BseGI	GGATG	1 cut(s)	48
BseLI	CCNNNNNNNGG	2 cut(s)	149, 216
BseMII	CTCAG	4 cut(s)	37, 92, 252, 270
BseRI	GAGGAG	6 cut(s)	113, 148, 151, 366, 369, 386
BshFI	GGCC	1 cut(s)	95
BsiHKAI	GWGCWC	3 cut(s)	24, 31, 108
BsiSI	CCGG	3 cut(s)	101, 150, 418
BslFI	GGGAC	1 cut(s)	212
BslI	CCNNNNNNNGG	2 cut(s)	149, 216
BsmAI	GTCTC	1 cut(s)	241
BsmBI	CGTCTC	1 cut(s)	241
BsmFI	GGGAC	1 cut(s)	212
BsnI	GGCC	1 cut(s)	95
Bsp1286I	GDGCHC	3 cut(s)	24, 31, 108
Bsp143I	GATC	3 cut(s)	81, 259, 264
BspACI	CCGC	2 cut(s)	171, 180
BspANI	GGCC	1 cut(s)	95
BspCNI	CTCAG	4 cut(s)	36, 91, 251, 269
BspTI	CTTAAG	1 cut(s)	137
BssECI	CCNNGG	2 cut(s)	90, 111
BssMI	GATC	3 cut(s)	81, 259, 264
BssT1I	CCWWGG	2 cut(s)	90, 111
Bst4CI	ACNGT	2 cut(s)	235, 391
BstAFI	CTTAAG	1 cut(s)	137
BstDEI	CTNAG	4 cut(s)	23, 78, 238, 256
BstF5I	GGATG	1 cut(s)	48
BstKTI	GATC	3 cut(s)	84, 262, 267
BstMAI	GTCTC	1 cut(s)	241
BstMBI	GATC	3 cut(s)	81, 259, 264
BstMWI	GCNNNNNNNGC	3 cut(s)	179, 202, 211
BstPAI	GACNNNNGTC	1 cut(s)	224
BstSCI	CCNGG	1 cut(s)	148
BstV2I	GAAGAC	2 cut(s)	390, 396
BstX2I	RGATCY	1 cut(s)	264
BstYI	RGATCY	1 cut(s)	264
BsuRI	GGCC	1 cut(s)	95
BtsCI	GGATG	1 cut(s)	48
BtsI	GCAGTG	1 cut(s)	165
BtsIMutI	CAGTG	1 cut(s)	165
Cfr13I	GGNCC	1 cut(s)	219
CseI	GACGC	1 cut(s)	83
CviJI	RGCY	9 cut(s)	22, 29, 95, 106, 142, 196, 205, 242, 272
CviKI_1	RGCY	9 cut(s)	22, 29, 95, 106, 142, 196, 205, 242, 272
DdeI	CTNAG	4 cut(s)	23, 78, 238, 256
DpnI	GATC	3 cut(s)	83, 261, 266
DpnII	GATC	3 cut(s)	81, 259, 264
Ecl136II	GAGCTC	3 cut(s)	22, 29, 106
Eco130I	CCWWGG	2 cut(s)	90, 111
Eco24I	GRGCYC	3 cut(s)	24, 31, 108
Eco47I	GGWCC	1 cut(s)	219
Eco53kI	GAGCTC	3 cut(s)	22, 29, 106
EcoICRI	GAGCTC	3 cut(s)	22, 29, 106
EcoT14I	CCWWGG	2 cut(s)	90, 111
EcoT38I	GRGCYC	3 cut(s)	24, 31, 108
ErhI	CCWWGG	2 cut(s)	90, 111
Esp3I	CGTCTC	1 cut(s)	241
FaiI	YATR	3 cut(s)	17, 324, 387
FaqI	GGGAC	1 cut(s)	212
FauI	CCCGC	1 cut(s)	187
Fnu4HI	GCNGC	1 cut(s)	171
FokI	GGATG	1 cut(s)	35
FriOI	GRGCYC	3 cut(s)	24, 31, 108
Fsp4HI	GCNGC	1 cut(s)	171
GluI	GCNGC	1 cut(s)	171
HaeIII	GGCC	1 cut(s)	95
HapII	CCGG	3 cut(s)	101, 150, 418
HgaI	GACGC	1 cut(s)	83
HinfI	GANTC	2 cut(s)	155, 294
HpaII	CCGG	3 cut(s)	101, 150, 418
Hpy166II	GTNNAC	1 cut(s)	383
Hpy188I	TCNGA	9 cut(s)	26, 81, 219, 259, 264, 299, 345, 412, 443
Hpy8I	GTNNAC	1 cut(s)	383
Hpy99I	CGWCG	1 cut(s)	77
HpyAV	CCTTC	1 cut(s)	280
HpyCH4III	ACNGT	2 cut(s)	235, 391
HpyF10VI	GCNNNNNNNGC	3 cut(s)	179, 202, 211
HpyF3I	CTNAG	4 cut(s)	23, 78, 238, 256
Kzo9I	GATC	3 cut(s)	81, 259, 264
LmnI	GCTCC	5 cut(s)	19, 34, 103, 345, 373
LpnPI	CCDG	4 cut(s)	114, 163, 253, 431
LweI	GCATC	1 cut(s)	223
MalI	GATC	3 cut(s)	83, 261, 266
MboI	GATC	3 cut(s)	81, 259, 264
MboII	GAAGA	6 cut(s)	244, 371, 374, 390, 396, 399
MflI	RGATCY	1 cut(s)	264
MhlI	GDGCHC	3 cut(s)	24, 31, 108
MluCI	AATT	1 cut(s)	428
MlyI	GAGTC	1 cut(s)	149
MseI	TTAA	2 cut(s)	5, 138
MspA1I	CMGCKG	1 cut(s)	182
MspCI	CTTAAG	1 cut(s)	137
MspI	CCGG	3 cut(s)	101, 150, 418
MspR9I	CCNGG	1 cut(s)	150
MwoI	GCNNNNNNNGC	3 cut(s)	179, 202, 211
NciI	CCSGG	1 cut(s)	150
NdeII	GATC	3 cut(s)	81, 259, 264
PfeI	GAWTC	1 cut(s)	294
PkrI	GCNGC	1 cut(s)	172
PleI	GAGTC	1 cut(s)	149
PpsI	GAGTC	1 cut(s)	149
PshAI	GACNNNNGTC	1 cut(s)	224
Psp124BI	GAGCTC	3 cut(s)	24, 31, 108
PspPI	GGNCC	1 cut(s)	219
PsuI	RGATCY	1 cut(s)	264
SacI	GAGCTC	3 cut(s)	24, 31, 108
SaqAI	TTAA	2 cut(s)	5, 138
SatI	GCNGC	1 cut(s)	171
Sau3AI	GATC	3 cut(s)	81, 259, 264
Sau96I	GGNCC	1 cut(s)	219
SchI	GAGTC	1 cut(s)	149
ScrFI	CCNGG	1 cut(s)	150
SduI	GDGCHC	3 cut(s)	24, 31, 108
SetI	ASST	9 cut(s)	24, 31, 63, 92, 108, 117, 133, 249, 291
SfaNI	GCATC	1 cut(s)	223
SinI	GGWCC	1 cut(s)	219
SmlI	CTYRAG	1 cut(s)	137
SmoI	CTYRAG	1 cut(s)	137
Sse9I	AATT	1 cut(s)	428
SsiI	CCGC	2 cut(s)	171, 180
SspI	AATATT	1 cut(s)	189
SstI	GAGCTC	3 cut(s)	24, 31, 108
StyD4I	CCNGG	1 cut(s)	148
StyI	CCWWGG	2 cut(s)	90, 111
TaaI	ACNGT	2 cut(s)	235, 391
TaqI	TCGA	1 cut(s)	72
TasI	AATT	1 cut(s)	428
TauI	GCSGC	1 cut(s)	173
TfiI	GAWTC	1 cut(s)	294
Tru1I	TTAA	2 cut(s)	5, 138
Tru9I	TTAA	2 cut(s)	5, 138
TscAI	CASTG	1 cut(s)	172
TspDTI	ATGAA	2 cut(s)	299, 300
TspRI	CASTG	1 cut(s)	172
Vha464I	CTTAAG	1 cut(s)	137
VpaK11BI	GGWCC	1 cut(s)	219
XapI	RAATTY	1 cut(s)	428

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.