Rh7DG374900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0015536
Physical Location & Seq
Reverse (-)
50909775 .. 50910359
585 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG374900.1

Sequence Viewer

Length: 585 bp
ATGAATGTGGCAGTCCTGAAGAAAAAGCACACTAGTAGTACTCTCGATGATGACCAGAACAAAACCAAAAGGTTGAGAATTGAACAACCTGCTGCAACCACCAATAGTGAAATTATGGTTGTGAATTGTTCTAATTCTGATTATGATGACAATGTAGAGTTCACACGGTGGCTACAGGTGGTTTTGGCTGAGGAAATCAGCATCAACTCTATGGATGATGTCACCCTCAATGCCACATTGGGTGAGAGTCTTGGAGGAACTGCATATGGTTTGGGCGATTCTTGTGTGGATCAACATGATATCTATTCTACTTCACCTTCTACTATTGATCCTACTCTATTTGATTTTACTAACAATGCAAATGCAGATTCCTTGTGGATAGTCAGGTCTTATTTTTCTTTATTGGCATCACCTGTTAATTTCGATGATCTATTATGTGATGCTAATCAAAATAATGATGCAGGCTCTTCACAGATGCAAAGCATGTGCTCATTTGTATCTGATGATAATATTTTATGTGATGCTACTCATGACAATAATGCAGGTTCTTCATATGCACAAAGCATTAAAGCCTTTGATGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

194

Amino Acids

21.15

Weight (kDa)

4.05

Isoelectric Point (pI)

53.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 97, 533
AclWI GGATC 2 cut(s) 297, 323
AcuI CTGAAG 1 cut(s) 38
AdeI CACNNNGTG 1 cut(s) 168
AfaI GTAC 1 cut(s) 40
AgsI TTSAA 1 cut(s) 83
AhlI ACTAGT 1 cut(s) 32
Alw21I GWGCWC 1 cut(s) 491
AlwI GGATC 2 cut(s) 297, 323
ApeKI GCWGC 1 cut(s) 92
AsuHPI GGTGA 4 cut(s) 214, 254, 306, 402
Bbv12I GWGCWC 1 cut(s) 491
BbvCI CCTCAGC 1 cut(s) 189
BbvI GCAGC 1 cut(s) 79
BccI CCATC 1 cut(s) 572
BcuI ACTAGT 1 cut(s) 32
BfaI CTAG 1 cut(s) 33
BfmI CTRYAG 1 cut(s) 173
BfuAI ACCTGC 2 cut(s) 97, 533
BisI GCNGC 1 cut(s) 93
BlsI GCNGC 1 cut(s) 94
BmcAI AGTACT 1 cut(s) 40
BmsI GCATC 6 cut(s) 210, 416, 430, 448, 465, 511
Bpu10I CCTNAGC 1 cut(s) 189
BsaBI GATNNNNATC 1 cut(s) 444
Bse8I GATNNNNATC 1 cut(s) 444
BseGI GGATG 1 cut(s) 220
BseJI GATNNNNATC 1 cut(s) 444
BseMII CTCAG 1 cut(s) 180
BseXI GCAGC 1 cut(s) 79
BsiHKAI GWGCWC 1 cut(s) 491
Bsp1286I GDGCHC 1 cut(s) 491
Bsp143I GATC 3 cut(s) 289, 328, 427
BspCNI CTCAG 1 cut(s) 181
BspHI TCATGA 1 cut(s) 529
BspMI ACCTGC 2 cut(s) 97, 533
BspPI GGATC 2 cut(s) 297, 323
BspQI GCTCTTC 1 cut(s) 472
BssMI GATC 3 cut(s) 289, 328, 427
Bst4CI ACNGT 1 cut(s) 168
Bst6I CTCTTC 1 cut(s) 472
BstC8I GCNNGC 1 cut(s) 463
BstDEI CTNAG 1 cut(s) 189
BstF5I GGATG 1 cut(s) 220
BstKTI GATC 3 cut(s) 292, 331, 430
BstMBI GATC 3 cut(s) 289, 328, 427
BstNSI RCATGY 1 cut(s) 487
BstSFI CTRYAG 1 cut(s) 173
BstV1I GCAGC 1 cut(s) 79
BtsCI GGATG 1 cut(s) 220
BveI ACCTGC 2 cut(s) 97, 533
Cac8I GCNNGC 1 cut(s) 463
CciI TCATGA 1 cut(s) 529
Csp6I GTAC 1 cut(s) 39
CviAII CATG 3 cut(s) 296, 484, 530
CviJI RGCY 4 cut(s) 172, 188, 465, 572
CviKI_1 RGCY 4 cut(s) 172, 188, 465, 572
CviQI GTAC 1 cut(s) 39
DdeI CTNAG 1 cut(s) 189
DpnI GATC 3 cut(s) 291, 330, 429
DpnII GATC 3 cut(s) 289, 328, 427
DraIII CACNNNGTG 1 cut(s) 168
Eam1104I CTCTTC 1 cut(s) 472
EarI CTCTTC 1 cut(s) 472
Eco32I GATATC 1 cut(s) 301
Eco57I CTGAAG 1 cut(s) 38
EcoRV GATATC 1 cut(s) 301
FaeI CATG 3 cut(s) 299, 487, 533
FatI CATG 3 cut(s) 295, 483, 529
FauNDI CATATG 2 cut(s) 265, 553
Fnu4HI GCNGC 1 cut(s) 93
FokI GGATG 1 cut(s) 227
Fsp4HI GCNGC 1 cut(s) 93
FspBI CTAG 1 cut(s) 33
GluI GCNGC 1 cut(s) 93
Hin1II CATG 3 cut(s) 299, 487, 533
HinfI GANTC 3 cut(s) 247, 278, 368
HphI GGTGA 4 cut(s) 214, 254, 306, 402
Hpy166II GTNNAC 1 cut(s) 162
Hpy188I TCNGA 2 cut(s) 139, 502
Hpy188III TCNNGA 3 cut(s) 16, 44, 530
Hpy8I GTNNAC 1 cut(s) 162
HpyAV CCTTC 1 cut(s) 327
HpyCH4III ACNGT 1 cut(s) 168
HpyCH4V TGCA 8 cut(s) 95, 263, 359, 365, 461, 478, 542, 557
HpyF3I CTNAG 1 cut(s) 189
Hsp92II CATG 3 cut(s) 299, 487, 533
Kzo9I GATC 3 cut(s) 289, 328, 427
LguI GCTCTTC 1 cut(s) 472
LpnPI CCDG 8 cut(s) 29, 68, 102, 161, 370, 426, 447, 528
Lsp1109I GCAGC 1 cut(s) 79
LweI GCATC 6 cut(s) 210, 416, 430, 448, 465, 511
MaeI CTAG 1 cut(s) 33
MaeIII GTNAC 1 cut(s) 220
MalI GATC 3 cut(s) 291, 330, 429
MboI GATC 3 cut(s) 289, 328, 427
MboII GAAGA 3 cut(s) 31, 459, 540
MhlI GDGCHC 1 cut(s) 491
MluCI AATT 5 cut(s) 78, 111, 124, 133, 418
MlyI GAGTC 1 cut(s) 256
MnlI CCTC 3 cut(s) 184, 236, 248
MseI TTAA 2 cut(s) 417, 567
NdeI CATATG 2 cut(s) 265, 553
NdeII GATC 3 cut(s) 289, 328, 427
NlaIII CATG 3 cut(s) 299, 487, 533
NmuCI GTSAC 1 cut(s) 220
NspI RCATGY 1 cut(s) 487
PagI TCATGA 1 cut(s) 529
PciSI GCTCTTC 1 cut(s) 472
PfeI GAWTC 2 cut(s) 278, 368
PkrI GCNGC 1 cut(s) 94
PleI GAGTC 1 cut(s) 255
PpsI GAGTC 1 cut(s) 255
RsaI GTAC 1 cut(s) 40
RsaNI GTAC 1 cut(s) 39
SapI GCTCTTC 1 cut(s) 472
SaqAI TTAA 2 cut(s) 417, 567
SatI GCNGC 1 cut(s) 93
Sau3AI GATC 3 cut(s) 289, 328, 427
ScaI AGTACT 1 cut(s) 40
SchI GAGTC 1 cut(s) 256
SduI GDGCHC 1 cut(s) 491
SetI ASST 7 cut(s) 74, 91, 180, 319, 389, 415, 547
SfaNI GCATC 6 cut(s) 210, 416, 430, 448, 465, 511
SfcI CTRYAG 1 cut(s) 173
SpeI ACTAGT 1 cut(s) 32
Sse9I AATT 5 cut(s) 78, 111, 124, 133, 418
SspI AATATT 1 cut(s) 511
SspMI CTAG 1 cut(s) 33
TaaI ACNGT 1 cut(s) 168
TaqI TCGA 2 cut(s) 45, 423
TasI AATT 5 cut(s) 78, 111, 124, 133, 418
TatI WGTACW 1 cut(s) 38
TfiI GAWTC 2 cut(s) 278, 368
Tru1I TTAA 2 cut(s) 417, 567
Tru9I TTAA 2 cut(s) 417, 567
TseFI GTSAC 1 cut(s) 220
TseI GCWGC 1 cut(s) 92
Tsp45I GTSAC 1 cut(s) 220
TspDTI ATGAA 2 cut(s) 17, 540
XceI RCATGY 1 cut(s) 487
XspI CTAG 1 cut(s) 33
ZrmI AGTACT 1 cut(s) 40
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.