RLG00000034529

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0015536
Physical Location & Seq
Forward (+)
44390840 .. 44393084
2245 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034529

Sequence Viewer

Length: 366 bp
ATGTGGATCCAAGGAGCTTCGCCGAGAGGAGAAGACGATGTCGGTGAGGCCAGCGGGTGCCAGTGTGGGTCACAGGTGATGACGCTGCTGGACTCCGGGTTTTGTCACCGAGACATGATGAAGAGATTACGGGTGAGGTCACCAAGTGAAAAGATTTTCGATGAGGAGTTAGCGGGAGATGAAGAGATTACCGATCGGGTCTCCAACGATCCGGCCCAGTGGCTCGAGCTCTGCTTCGAAAATCTTCTTTGCACCGAGAGACTTGGTTTTCTGGATTTTTCTTCAAGTATTGGTTTTCGATTGAAAATTGAACTTTCTATAGATCTAGGCTCGGAGTTTGATGAAGGTTGGAATCGGAGATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

122

Amino Acids

13.78

Weight (kDa)

4.43

Isoelectric Point (pI)

57.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 57
AciI CCGC 2 cut(s) 54, 173
AclWI GGATC 2 cut(s) 14, 203
AdeI CACNNNGTG 1 cut(s) 146
AgsI TTSAA 3 cut(s) 285, 304, 311
AluBI AGCT 2 cut(s) 17, 229
AluI AGCT 2 cut(s) 17, 229
Alw21I GWGCWC 1 cut(s) 231
Alw26I GTCTC 3 cut(s) 105, 205, 253
AlwI GGATC 2 cut(s) 14, 203
Ama87I CYCGRG 1 cut(s) 224
AoxI GGCC 2 cut(s) 48, 213
ApeKI GCWGC 1 cut(s) 85
Asp700I GAANNNNTTC 1 cut(s) 243
AspS9I GGNCC 1 cut(s) 214
AsuC2I CCSGG 1 cut(s) 97
AsuHPI GGTGA 5 cut(s) 56, 88, 98, 132, 145
AsuII TTCGAA 1 cut(s) 237
AvaI CYCGRG 1 cut(s) 224
BamHI GGATCC 1 cut(s) 6
BanI GGYRCC 1 cut(s) 57
BanII GRGCYC 1 cut(s) 231
BbsI GAAGAC 1 cut(s) 39
Bbv12I GWGCWC 1 cut(s) 231
BbvI GCAGC 1 cut(s) 72
BcnI CCSGG 1 cut(s) 97
BcoDI GTCTC 3 cut(s) 105, 205, 253
BfaI CTAG 1 cut(s) 326
BfmI CTRYAG 1 cut(s) 318
BglII AGATCT 1 cut(s) 322
BisI GCNGC 1 cut(s) 86
BlsI GCNGC 1 cut(s) 87
Bme1390I CCNGG 1 cut(s) 97
BmeT110I CYCGRG 1 cut(s) 224
BmgT120I GGNCC 1 cut(s) 214
BmiI GGNNCC 2 cut(s) 8, 59
BmrFI CCNGG 1 cut(s) 97
BmrI ACTGGG 1 cut(s) 211
BmuI ACTGGG 1 cut(s) 211
BpiI GAAGAC 1 cut(s) 39
Bpu14I TTCGAA 1 cut(s) 237
BpuMI CCSGG 1 cut(s) 97
BsaI GGTCTC 1 cut(s) 205
BsaJI CCNNGG 1 cut(s) 10
Bse1I ACTGG 2 cut(s) 61, 217
BseDI CCNNGG 1 cut(s) 10
BseNI ACTGG 2 cut(s) 61, 217
BseRI GAGGAG 2 cut(s) 42, 179
BseXI GCAGC 1 cut(s) 72
Bsh1285I CGRYCG 1 cut(s) 196
BshFI GGCC 2 cut(s) 50, 215
BshNI GGYRCC 1 cut(s) 57
BsiEI CGRYCG 1 cut(s) 196
BsiHKAI GWGCWC 1 cut(s) 231
BsiHKCI CYCGRG 1 cut(s) 224
BsiSI CCGG 2 cut(s) 96, 212
BsmAI GTCTC 3 cut(s) 105, 205, 253
BsnI GGCC 2 cut(s) 50, 215
Bso31I GGTCTC 1 cut(s) 205
BsoBI CYCGRG 1 cut(s) 224
Bsp119I TTCGAA 1 cut(s) 237
Bsp1286I GDGCHC 1 cut(s) 231
Bsp143I GATC 4 cut(s) 6, 193, 208, 322
BspACI CCGC 2 cut(s) 54, 173
BspANI GGCC 2 cut(s) 50, 215
BspLI GGNNCC 2 cut(s) 8, 59
BspPI GGATC 2 cut(s) 14, 203
BspT104I TTCGAA 1 cut(s) 237
BspT107I GGYRCC 1 cut(s) 57
BspTNI GGTCTC 1 cut(s) 205
BsrI ACTGG 2 cut(s) 61, 217
BssECI CCNNGG 1 cut(s) 10
BssMI GATC 4 cut(s) 6, 193, 208, 322
BssT1I CCWWGG 1 cut(s) 10
Bst6I CTCTTC 2 cut(s) 116, 177
BstBI TTCGAA 1 cut(s) 237
BstC8I GCNNGC 1 cut(s) 52
BstEII GGTNACC 1 cut(s) 138
BstKTI GATC 4 cut(s) 9, 196, 211, 325
BstMAI GTCTC 3 cut(s) 105, 205, 253
BstMBI GATC 4 cut(s) 6, 193, 208, 322
BstMCI CGRYCG 1 cut(s) 196
BstPI GGTNACC 1 cut(s) 138
BstSCI CCNGG 1 cut(s) 95
BstSFI CTRYAG 1 cut(s) 318
BstV1I GCAGC 1 cut(s) 72
BstV2I GAAGAC 1 cut(s) 39
BstX2I RGATCY 2 cut(s) 6, 322
BstYI RGATCY 2 cut(s) 6, 322
BsuRI GGCC 2 cut(s) 50, 215
BtsIMutI CAGTG 2 cut(s) 68, 224
Cac8I GCNNGC 1 cut(s) 52
Cfr13I GGNCC 1 cut(s) 214
CseI GACGC 1 cut(s) 91
CviAII CATG 1 cut(s) 115
CviJI RGCY 6 cut(s) 17, 50, 215, 223, 229, 330
CviKI_1 RGCY 6 cut(s) 17, 50, 215, 223, 229, 330
DpnI GATC 4 cut(s) 8, 195, 210, 324
DpnII GATC 4 cut(s) 6, 193, 208, 322
DraIII CACNNNGTG 1 cut(s) 146
Eam1104I CTCTTC 2 cut(s) 116, 177
EarI CTCTTC 2 cut(s) 116, 177
Ecl136II GAGCTC 1 cut(s) 229
Eco130I CCWWGG 1 cut(s) 10
Eco24I GRGCYC 1 cut(s) 231
Eco31I GGTCTC 1 cut(s) 205
Eco53kI GAGCTC 1 cut(s) 229
Eco88I CYCGRG 1 cut(s) 224
Eco91I GGTNACC 1 cut(s) 138
EcoICRI GAGCTC 1 cut(s) 229
EcoO65I GGTNACC 1 cut(s) 138
EcoT14I CCWWGG 1 cut(s) 10
EcoT38I GRGCYC 1 cut(s) 231
ErhI CCWWGG 1 cut(s) 10
FaeI CATG 1 cut(s) 118
FaiI YATR 2 cut(s) 116, 320
FatI CATG 1 cut(s) 114
FauI CCCGC 2 cut(s) 47, 166
Fnu4HI GCNGC 1 cut(s) 86
FriOI GRGCYC 1 cut(s) 231
Fsp4HI GCNGC 1 cut(s) 86
FspBI CTAG 1 cut(s) 326
GluI GCNGC 1 cut(s) 86
HaeIII GGCC 2 cut(s) 50, 215
HapII CCGG 2 cut(s) 96, 212
HgaI GACGC 1 cut(s) 91
Hin1II CATG 1 cut(s) 118
HinfI GANTC 2 cut(s) 92, 352
HpaII CCGG 2 cut(s) 96, 212
HphI GGTGA 5 cut(s) 56, 88, 98, 132, 145
Hpy188I TCNGA 2 cut(s) 334, 357
Hpy188III TCNNGA 1 cut(s) 272
HpyAV CCTTC 1 cut(s) 338
HpyCH4V TGCA 1 cut(s) 252
Hsp92II CATG 1 cut(s) 118
Kzo9I GATC 4 cut(s) 6, 193, 208, 322
LmnI GCTCC 1 cut(s) 14
LpnPI CCDG 8 cut(s) 59, 64, 74, 74, 109, 225, 230, 257
Lsp1109I GCAGC 1 cut(s) 72
MaeI CTAG 1 cut(s) 326
MaeIII GTNAC 3 cut(s) 69, 104, 138
MalI GATC 4 cut(s) 8, 195, 210, 324
MboI GATC 4 cut(s) 6, 193, 208, 322
MboII GAAGA 5 cut(s) 44, 133, 194, 236, 273
MflI RGATCY 2 cut(s) 6, 322
MhlI GDGCHC 1 cut(s) 231
MluCI AATT 1 cut(s) 306
MlyI GAGTC 1 cut(s) 86
MmeI TCCRAC 2 cut(s) 228, 329
MnlI CCTC 4 cut(s) 20, 40, 129, 157
MroXI GAANNNNTTC 1 cut(s) 243
MspA1I CMGCKG 1 cut(s) 54
MspI CCGG 2 cut(s) 96, 212
MspR9I CCNGG 1 cut(s) 97
NciI CCSGG 1 cut(s) 97
NdeII GATC 4 cut(s) 6, 193, 208, 322
NlaIII CATG 1 cut(s) 118
NlaIV GGNNCC 2 cut(s) 8, 59
NmeAIII GCCGAG 1 cut(s) 48
NmuCI GTSAC 3 cut(s) 69, 104, 138
NspV TTCGAA 1 cut(s) 237
PaeR7I CTCGAG 1 cut(s) 224
PdmI GAANNNNTTC 1 cut(s) 243
PfeI GAWTC 1 cut(s) 352
PflFI GACNNNGTC 1 cut(s) 38
PkrI GCNGC 1 cut(s) 87
Ple19I CGATCG 1 cut(s) 196
PleI GAGTC 1 cut(s) 86
PpsI GAGTC 1 cut(s) 86
Psp124BI GAGCTC 1 cut(s) 231
PspEI GGTNACC 1 cut(s) 138
PspN4I GGNNCC 2 cut(s) 8, 59
PspPI GGNCC 1 cut(s) 214
PspXI VCTCGAGB 1 cut(s) 224
PsuI RGATCY 2 cut(s) 6, 322
PsyI GACNNNGTC 1 cut(s) 38
PvuI CGATCG 1 cut(s) 196
SacI GAGCTC 1 cut(s) 231
SatI GCNGC 1 cut(s) 86
Sau3AI GATC 4 cut(s) 6, 193, 208, 322
Sau96I GGNCC 1 cut(s) 214
SchI GAGTC 1 cut(s) 86
ScrFI CCNGG 1 cut(s) 97
SduI GDGCHC 1 cut(s) 231
SetI ASST 5 cut(s) 19, 78, 140, 231, 349
SfcI CTRYAG 1 cut(s) 318
Sfr274I CTCGAG 1 cut(s) 224
SfuI TTCGAA 1 cut(s) 237
SlaI CTCGAG 1 cut(s) 224
SmlI CTYRAG 1 cut(s) 224
SmoI CTYRAG 1 cut(s) 224
Sse9I AATT 1 cut(s) 306
SsiI CCGC 2 cut(s) 54, 173
SspMI CTAG 1 cut(s) 326
SstI GAGCTC 1 cut(s) 231
StyD4I CCNGG 1 cut(s) 95
StyI CCWWGG 1 cut(s) 10
TaqI TCGA 4 cut(s) 159, 225, 237, 298
TasI AATT 1 cut(s) 306
TfiI GAWTC 1 cut(s) 352
TscAI CASTG 2 cut(s) 68, 224
TseFI GTSAC 3 cut(s) 69, 104, 138
TseI GCWGC 1 cut(s) 85
Tsp45I GTSAC 3 cut(s) 69, 104, 138
TspDTI ATGAA 3 cut(s) 134, 195, 357
TspRI CASTG 2 cut(s) 68, 224
Tth111I GACNNNGTC 1 cut(s) 38
XhoI CTCGAG 1 cut(s) 224
XmnI GAANNNNTTC 1 cut(s) 243
XspI CTAG 1 cut(s) 326
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.