FvH4_2g15820

GPI mannosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0009558
Physical Location & Seq
Forward (+)
13869864 .. 13873551
3688 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g15820.t2

Sequence Viewer

Length: 975 bp
ATGATTTCTGTGATGGCTTGGCTGTTTAATCCGTTTACGTTTACGATTGGGACTCGTGGCAACTGTGAGCCCATTGTGTGTGCTTTGATTCTGTGGGTCTTTATATGTCTCATGAACGGACGTGTGTTACAAGCGGCATTTTGGTATGGACTTGTTGTCCACTTCCGGATCTACCCCATCATCTATGCACTCCCTATTCTTTTGATTCTTGATCCTCATGTGTTTCGACCTGGTCAGAAACCTAGCCTTCAACGTTGGGATCATCAACAAGAATCACCTCAAAGCAGCTTTAAAACAAGGCTTGCCTATCTGCTTCGGCCATGGTTAATTGTGAAAAGTGCATTTACACGAGACAGGATACTTTTCTCTCTCATATCTGGGGCCATATTCTTCCTTTTCACTGGTCTTTTTTATCATCTATATGGGTGGGATTTCCTGCACGAGTCACTGCTATATCACCTTACTCGTACCGATCCAAGGCACAATTTTTCCATATATTTTTATCACATCTACCTTCAATATGAGAATAAAATATCGGTACTGGAGAAGCTCATCTCATTTTTGCCTCAGTTGATAGTTCAGCTTGTTCTCATTTTGAGTTTCGCTCAAGACCTTCCGTTCTGCTGCTTTGTGCAGACAGTGGCATTTGTGGCGTTCAACAAGGTGATGACTGCACAGTACTTTGTCTGGTTTTTCTGCCTCTTACCTCTGTCACTTGCTTGGAGCAATATGAAGCTTAAATGGAAAGGCTTATCTTGCATCGCATTGTGGGTAGGTGGTCAACTTCATTGGTTGTGGTGGGGTTATATGCATGAGTTCAAGGGGCGGAATGTATTTCTTCAGCTGTGGGTGGCAGGCATTATATTCTTATCTGCAAACACATATGTTTTGGTTTCGCTCATCAATCATCACAGATGTTCTCCTGTTTTCACGCAATTGGAGAAAATTTCAAAGGGTGCGAAGAAATTGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00563 ko01100 map00563 map01100
Pfam Domains
Protein Families
Mannosyl_trans

Protein Analysis

325

Amino Acids

38.13

Weight (kDa)

9.56

Isoelectric Point (pI)

41.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PIG-U PF06728 12 - 354 5.9e-12 GPI transamidase subunit PIG-U
Mannosyl_trans PF05007 126 - 411 1.3e-72 Mannosyltransferase (PIG-M)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 165
AciI CCGC 2 cut(s) 134, 826
AclI AACGTT 1 cut(s) 253
AclWI GGATC 4 cut(s) 176, 206, 267, 467
AcoI YGGCCR 1 cut(s) 317
AcsI RAATTY 1 cut(s) 945
AcuI CTGAAG 1 cut(s) 824
AfaI GTAC 3 cut(s) 469, 540, 680
AfiI CCNNNNNNNGG 1 cut(s) 477
AflIII ACRYGT 1 cut(s) 121
AgsI TTSAA 6 cut(s) 251, 518, 658, 820, 951, 970
AhdI GACNNNNNGTC 1 cut(s) 155
AjiI CACGTC 1 cut(s) 122
AjnI CCWGG 1 cut(s) 229
AluBI AGCT 5 cut(s) 288, 550, 583, 736, 844
AluI AGCT 5 cut(s) 288, 550, 583, 736, 844
Alw26I GTCTC 2 cut(s) 113, 345
AlwI GGATC 4 cut(s) 176, 206, 267, 467
Aor13HI TCCGGA 1 cut(s) 165
AoxI GGCC 2 cut(s) 317, 381
ApeKI GCWGC 2 cut(s) 285, 624
ApoI RAATTY 1 cut(s) 945
AspS9I GGNCC 1 cut(s) 381
AsuHPI GGTGA 3 cut(s) 267, 449, 676
BanII GRGCYC 1 cut(s) 72
BauI CACGAG 3 cut(s) 54, 348, 440
BbvI GCAGC 2 cut(s) 297, 611
BccI CCATC 2 cut(s) 7, 185
BciT130I CCWGG 1 cut(s) 231
BciVI GTATCC 1 cut(s) 351
BcoDI GTCTC 2 cut(s) 113, 345
BfaI CTAG 1 cut(s) 243
BfuI GTATCC 1 cut(s) 351
BisI GCNGC 3 cut(s) 135, 286, 625
BlsI GCNGC 3 cut(s) 136, 287, 626
BmcAI AGTACT 1 cut(s) 680
Bme1390I CCNGG 1 cut(s) 231
BmeRI GACNNNNNGTC 1 cut(s) 155
BmgBI CACGTC 1 cut(s) 122
BmgT120I GGNCC 1 cut(s) 381
BmiI GGNNCC 1 cut(s) 382
BmrFI CCNGG 1 cut(s) 231
BmsI GCATC 1 cut(s) 768
BplI GAGNNNNNCTC 2 cut(s) 589, 621
BpmI CTGGAG 1 cut(s) 563
BpuEI CTTGAG 1 cut(s) 591
BsaJI CCNNGG 2 cut(s) 320, 476
BsaWI WCCGGW 1 cut(s) 165
Bsc4I CCNNNNNNNGG 1 cut(s) 477
Bse1I ACTGG 2 cut(s) 406, 546
BseAI TCCGGA 1 cut(s) 165
BseBI CCWGG 1 cut(s) 231
BseDI CCNNGG 2 cut(s) 320, 476
BseLI CCNNNNNNNGG 1 cut(s) 477
BseMII CTCAG 1 cut(s) 581
BseNI ACTGG 2 cut(s) 406, 546
BseXI GCAGC 2 cut(s) 297, 611
BsgI GTGCAG 3 cut(s) 422, 653, 657
BshFI GGCC 2 cut(s) 319, 383
BsiSI CCGG 1 cut(s) 166
BslFI GGGAC 1 cut(s) 64
BslI CCNNNNNNNGG 1 cut(s) 477
BsmAI GTCTC 2 cut(s) 113, 345
BsmFI GGGAC 1 cut(s) 64
BsnI GGCC 2 cut(s) 319, 383
Bsp1286I GDGCHC 1 cut(s) 72
Bsp13I TCCGGA 1 cut(s) 165
Bsp143I GATC 4 cut(s) 168, 211, 259, 472
Bsp19I CCATGG 1 cut(s) 320
BspACI CCGC 2 cut(s) 134, 826
BspANI GGCC 2 cut(s) 319, 383
BspCNI CTCAG 1 cut(s) 580
BspEI TCCGGA 1 cut(s) 165
BspHI TCATGA 1 cut(s) 111
BspLI GGNNCC 1 cut(s) 382
BspPI GGATC 4 cut(s) 176, 206, 267, 467
BsrI ACTGG 2 cut(s) 406, 546
BssECI CCNNGG 2 cut(s) 320, 476
BssMI GATC 4 cut(s) 168, 211, 259, 472
BssSI CACGAG 3 cut(s) 54, 348, 440
BssT1I CCWWGG 2 cut(s) 320, 476
Bst2BI CACGAG 3 cut(s) 54, 348, 440
Bst2UI CCWGG 1 cut(s) 231
Bst4CI ACNGT 3 cut(s) 65, 640, 678
BstC8I GCNNGC 2 cut(s) 303, 856
BstDEI CTNAG 1 cut(s) 567
BstDSI CCRYGG 1 cut(s) 320
BstKTI GATC 4 cut(s) 171, 214, 262, 475
BstMAI GTCTC 2 cut(s) 113, 345
BstMBI GATC 4 cut(s) 168, 211, 259, 472
BstMWI GCNNNNNNNGC 2 cut(s) 650, 756
BstNI CCWGG 1 cut(s) 231
BstSCI CCNGG 1 cut(s) 229
BstV1I GCAGC 2 cut(s) 297, 611
BstX2I RGATCY 1 cut(s) 168
BstYI RGATCY 1 cut(s) 168
BsuI GTATCC 1 cut(s) 351
BsuRI GGCC 2 cut(s) 319, 383
BtgI CCRYGG 1 cut(s) 320
BtgZI GCGATG 1 cut(s) 745
BtrI CACGTC 1 cut(s) 122
BtsI GCAGTG 1 cut(s) 446
BtsIMutI CAGTG 3 cut(s) 399, 446, 645
Cac8I GCNNGC 2 cut(s) 303, 856
CciI TCATGA 1 cut(s) 111
Cfr13I GGNCC 1 cut(s) 381
CsiI ACCWGGT 1 cut(s) 229
Csp6I GTAC 3 cut(s) 468, 539, 679
CviAII CATG 4 cut(s) 112, 218, 321, 812
CviQI GTAC 3 cut(s) 468, 539, 679
DdeI CTNAG 1 cut(s) 567
DpnI GATC 4 cut(s) 170, 213, 261, 474
DpnII GATC 4 cut(s) 168, 211, 259, 472
DraI TTTAAA 1 cut(s) 292
DriI GACNNNNNGTC 1 cut(s) 155
EaeI YGGCCR 1 cut(s) 317
Eam1105I GACNNNNNGTC 1 cut(s) 155
EciI GGCGGA 1 cut(s) 841
Eco130I CCWWGG 2 cut(s) 320, 476
Eco24I GRGCYC 1 cut(s) 72
Eco57I CTGAAG 1 cut(s) 824
EcoRII CCWGG 1 cut(s) 229
EcoT14I CCWWGG 2 cut(s) 320, 476
EcoT22I ATGCAT 1 cut(s) 813
EcoT38I GRGCYC 1 cut(s) 72
ErhI CCWWGG 2 cut(s) 320, 476
FaeI CATG 4 cut(s) 115, 221, 324, 815
FaqI GGGAC 1 cut(s) 64
FatI CATG 4 cut(s) 111, 217, 320, 811
FauNDI CATATG 1 cut(s) 883
Fnu4HI GCNGC 3 cut(s) 135, 286, 625
FriOI GRGCYC 1 cut(s) 72
Fsp4HI GCNGC 3 cut(s) 135, 286, 625
FspBI CTAG 1 cut(s) 243
GluI GCNGC 3 cut(s) 135, 286, 625
GsuI CTGGAG 1 cut(s) 563
HaeIII GGCC 2 cut(s) 319, 383
HapII CCGG 1 cut(s) 166
Hin1II CATG 4 cut(s) 115, 221, 324, 815
HincII GTYRAC 1 cut(s) 782
HindII GTYRAC 1 cut(s) 782
HindIII AAGCTT 1 cut(s) 734
HinfI GANTC 5 cut(s) 52, 88, 205, 272, 443
HpaII CCGG 1 cut(s) 166
HphI GGTGA 3 cut(s) 267, 449, 676
Hpy166II GTNNAC 4 cut(s) 36, 42, 160, 782
Hpy188I TCNGA 1 cut(s) 237
Hpy188III TCNNGA 4 cut(s) 112, 166, 209, 608
Hpy8I GTNNAC 4 cut(s) 36, 42, 160, 782
HpyAV CCTTC 3 cut(s) 257, 524, 623
HpyCH4III ACNGT 3 cut(s) 65, 640, 678
HpyCH4IV ACGT 3 cut(s) 38, 121, 253
HpyCH4V TGCA 8 cut(s) 188, 341, 439, 634, 674, 759, 811, 875
HpyF10VI GCNNNNNNNGC 2 cut(s) 650, 756
HpyF3I CTNAG 1 cut(s) 567
HpySE526I ACGT 3 cut(s) 38, 121, 253
Hsp92II CATG 4 cut(s) 115, 221, 324, 815
Kpn2I TCCGGA 1 cut(s) 165
Kzo9I GATC 4 cut(s) 168, 211, 259, 472
LmnI GCTCC 1 cut(s) 723
Lsp1109I GCAGC 2 cut(s) 297, 611
LweI GCATC 1 cut(s) 768
MabI ACCWGGT 1 cut(s) 229
MaeI CTAG 1 cut(s) 243
MaeII ACGT 3 cut(s) 38, 121, 253
MaeIII GTNAC 3 cut(s) 126, 444, 711
MalI GATC 4 cut(s) 170, 213, 261, 474
MboI GATC 4 cut(s) 168, 211, 259, 472
MboII GAAGA 3 cut(s) 382, 830, 973
MfeI CAATTG 1 cut(s) 935
MflI RGATCY 1 cut(s) 168
MhlI GDGCHC 1 cut(s) 72
MluCI AATT 5 cut(s) 327, 484, 935, 945, 965
MlyI GAGTC 2 cut(s) 46, 452
MnlI CCTC 5 cut(s) 225, 288, 576, 710, 717
Mph1103I ATGCAT 1 cut(s) 813
MroI TCCGGA 1 cut(s) 165
MseI TTAA 4 cut(s) 27, 291, 326, 738
MslI CAYNNNNRTG 1 cut(s) 420
MspA1I CMGCKG 1 cut(s) 844
MspI CCGG 1 cut(s) 166
MspR9I CCNGG 1 cut(s) 231
MunI CAATTG 1 cut(s) 935
MvaI CCWGG 1 cut(s) 231
MwoI GCNNNNNNNGC 2 cut(s) 650, 756
NcoI CCATGG 1 cut(s) 320
NdeI CATATG 1 cut(s) 883
NdeII GATC 4 cut(s) 168, 211, 259, 472
NlaIII CATG 4 cut(s) 115, 221, 324, 815
NlaIV GGNNCC 1 cut(s) 382
NmuCI GTSAC 2 cut(s) 444, 711
NsiI ATGCAT 1 cut(s) 813
PagI TCATGA 1 cut(s) 111
PfeI GAWTC 3 cut(s) 88, 205, 272
PflFI GACNNNGTC 1 cut(s) 231
PkrI GCNGC 3 cut(s) 136, 287, 626
PleI GAGTC 2 cut(s) 46, 451
PpsI GAGTC 2 cut(s) 46, 451
Psp1406I AACGTT 1 cut(s) 253
Psp6I CCWGG 1 cut(s) 229
PspGI CCWGG 1 cut(s) 229
PspN4I GGNNCC 1 cut(s) 382
PspPI GGNCC 1 cut(s) 381
PsuI RGATCY 1 cut(s) 168
PsyI GACNNNGTC 1 cut(s) 231
PvuII CAGCTG 1 cut(s) 844
RsaI GTAC 3 cut(s) 469, 540, 680
RsaNI GTAC 3 cut(s) 468, 539, 679
RseI CAYNNNNRTG 1 cut(s) 420
SaqAI TTAA 4 cut(s) 27, 291, 326, 738
SatI GCNGC 3 cut(s) 135, 286, 625
Sau3AI GATC 4 cut(s) 168, 211, 259, 472
Sau96I GGNCC 1 cut(s) 381
ScaI AGTACT 1 cut(s) 680
SchI GAGTC 2 cut(s) 46, 452
ScrFI CCNGG 1 cut(s) 231
SduI GDGCHC 1 cut(s) 72
SexAI ACCWGGT 1 cut(s) 229
SfaNI GCATC 1 cut(s) 768
SmiMI CAYNNNNRTG 1 cut(s) 420
SmlI CTYRAG 1 cut(s) 606
SmoI CTYRAG 1 cut(s) 606
Sse9I AATT 5 cut(s) 327, 484, 935, 945, 965
SsiI CCGC 2 cut(s) 134, 826
SspMI CTAG 1 cut(s) 243
StyD4I CCNGG 1 cut(s) 229
StyI CCWWGG 2 cut(s) 320, 476
TaaI ACNGT 3 cut(s) 65, 640, 678
TaiI ACGT 3 cut(s) 41, 124, 256
TaqI TCGA 1 cut(s) 226
TasI AATT 5 cut(s) 327, 484, 935, 945, 965
TatI WGTACW 1 cut(s) 678
TauI GCSGC 1 cut(s) 137
TfiI GAWTC 3 cut(s) 88, 205, 272
Tru1I TTAA 4 cut(s) 27, 291, 326, 738
Tru9I TTAA 4 cut(s) 27, 291, 326, 738
TscAI CASTG 3 cut(s) 406, 453, 645
TseFI GTSAC 2 cut(s) 444, 711
TseI GCWGC 2 cut(s) 285, 624
Tsp45I GTSAC 2 cut(s) 444, 711
TspDTI ATGAA 3 cut(s) 128, 746, 776
TspGWI ACGGA 3 cut(s) 21, 132, 606
TspRI CASTG 3 cut(s) 406, 453, 645
Tth111I GACNNNGTC 1 cut(s) 231
XapI RAATTY 1 cut(s) 945
XspI CTAG 1 cut(s) 243
ZrmI AGTACT 1 cut(s) 680
Zsp2I ATGCAT 1 cut(s) 813
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.