Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0009558

Physical Location & Seq

Genomic Coordinates Forward (+)

17154830 .. 17157085

Gene Structure 2256 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0123700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGACAAACTCATTCAAAGATCAGATTGGTAAAGGTGGATATGGCACAGTATACAAAGGAAAGCTACCCAATGGCCTTGCGGTGGCAGTGAAAGTCCTAAGTGAATCGAAGGGTAATGGAGAAGAATTTATCAATGAAGTTGCTAGCATTGGTAGAACTTCTCATATCAATATAGTGACTCTTCTGGGATTTTGCTATGAAGGGGAGAAAAGAGCTCTCATATACGAGCACATGCCTAATGGATCGTTGGATAAATTCATACATTATAAGCAAGGCTCTTCAGATGAAAGTTGCCGCTTGGAATGGAAAACATTATCTGAAATTGCAGTTGGCATTGCTCGTGGACTAGAATACTTGCACCGTGGTTGTAACACAAGAATTTTACATTTTGACATAAAGCCACAAAACATTCTTCTGGATAAAGATTTTTGCCCAAAGATATCTGATTTCGGCCTTGCCAAACTATGCATGACGAAGGAAAGTATTGTATCGATGCTAGGAACAAGAGGAACTGCAGGATACATTGCACCAGAAGTGTTTAATCGGAACTTTGGAGGAGTATCTCATAAGTCTGATGTTTATAGCTATGGGATGCTAGTTCTTGAAATGGTTGGTGCAAGAAAGAATTTGGATTCAGAAGTGTCTCATACCAGTGAAATGTTTCCGCATTGCATATATAAAGATCTAGAGCTAGAGAAGAATGATATTATATTTGGGGAAATAACAGAGGACGAGAGCAAAATAGCAAGAAAGATGATATTGATAAGTCTAGGGTGCATTCAGACCCTTCCATCTGATCGACCATCAATGAGCAAAGTGGTAGAGATGTTGGAAGGACCCCTTCATTCCTTGCCAATTCCACCAAAGCCTCTCTTATTTTCTGAAGAAGAATCTGCACCCATGTCCCAACCATCTGAAACAGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00563 ko01100 map00563 map01100

Pfam Domains

Protein Families

Mannosyl_trans

Protein Analysis

308

Amino Acids

34.1

Weight (kDa)

5.89

Isoelectric Point (pI)

36.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	5 - 277	4.4e-45	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	6 - 275	1.4e-45	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009558)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22130 AT5G22130 AT5G22130
fragaria_vesca	FvH4_2g15820 FvH4_2g15820
malus_domestica	MD05G1127200.v1.1 MD10G1130600.v1.1
prunus_persica	Prupe.8G170900_v2.0.a1
pyrus_communis	pycom05g12300 pycom10g11190
rosa_chinensis	RchiOBHm_Chr6g0279191
rosa_laevigata	RLG00000013156
rosa_multiflora	Rmu_sc0014203.1_g000010 Rmu_sc0014536.1_g000005
rosa_roxburghii	Rroxscaffold_7G00189040
rosa_rugosa	Rorug06G0123600 Rorug06G0123700
rosa_samantha	Rh6AG231900 Rh6BG236800 Rh6CG238700 Rh6DG230300
rosa_wichuraiana	Rw6G020300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	267
AccI	GTMKAC	1 cut(s)	51
AciI	CCGC	3 cut(s)	80, 295, 665
AclWI	GGATC	1 cut(s)	250
AcsI	RAATTY	4 cut(s)	125, 254, 378, 625
AcuI	CTGAAG	2 cut(s)	264, 903
AfiI	CCNNNNNNNGG	1 cut(s)	82
AgsI	TTSAA	2 cut(s)	16, 605
AjuI	GAANNNNNNNTTGG	2 cut(s)	312, 344
AluBI	AGCT	4 cut(s)	64, 215, 585, 691
AluI	AGCT	4 cut(s)	64, 215, 585, 691
Alw21I	GWGCWC	2 cut(s)	217, 231
Alw26I	GTCTC	1 cut(s)	648
AlwI	GGATC	1 cut(s)	250
AoxI	GGCC	2 cut(s)	73, 451
ApoI	RAATTY	4 cut(s)	125, 254, 378, 625
Asp700I	GAANNNNTTC	1 cut(s)	660
AspS9I	GGNCC	1 cut(s)	836
AsuNHI	GCTAGC	1 cut(s)	143
AvaII	GGWCC	1 cut(s)	836
BanII	GRGCYC	1 cut(s)	217
BauI	CACGAG	1 cut(s)	339
Bbv12I	GWGCWC	2 cut(s)	217, 231
BccI	CCATC	3 cut(s)	799, 811, 919
BciVI	GTATCC	1 cut(s)	512
BcoDI	GTCTC	1 cut(s)	648
BfaI	CTAG	7 cut(s)	144, 347, 497, 596, 686, 692, 770
BfmI	CTRYAG	1 cut(s)	513
BfuI	GTATCC	1 cut(s)	512
BglII	AGATCT	1 cut(s)	682
BisI	GCNGC	1 cut(s)	295
BlsI	GCNGC	1 cut(s)	296
Bme18I	GGWCC	1 cut(s)	836
BmgT120I	GGNCC	1 cut(s)	836
BmiI	GGNNCC	1 cut(s)	838
BmsI	GCATC	2 cut(s)	483, 582
BmtI	GCTAGC	1 cut(s)	147
Bsa29I	ATCGAT	1 cut(s)	491
BsaJI	CCNNGG	1 cut(s)	361
Bsc4I	CCNNNNNNNGG	1 cut(s)	82
Bse1I	ACTGG	1 cut(s)	651
Bse3DI	GCAATG	3 cut(s)	333, 522, 667
BseCI	ATCGAT	1 cut(s)	491
BseDI	CCNNGG	1 cut(s)	361
BseGI	GGATG	1 cut(s)	597
BseLI	CCNNNNNNNGG	1 cut(s)	82
BseMI	GCAATG	3 cut(s)	333, 522, 667
BseNI	ACTGG	1 cut(s)	651
BseRI	GAGGAG	1 cut(s)	570
BsgI	GTGCAG	1 cut(s)	879
BshFI	GGCC	2 cut(s)	75, 453
BshVI	ATCGAT	1 cut(s)	491
BsiHKAI	GWGCWC	2 cut(s)	217, 231
BslFI	GGGAC	1 cut(s)	889
BslI	CCNNNNNNNGG	1 cut(s)	82
BsmAI	GTCTC	1 cut(s)	648
BsmFI	GGGAC	1 cut(s)	889
BsmI	GAATGC	1 cut(s)	777
BsnI	GGCC	2 cut(s)	75, 453
Bsp1286I	GDGCHC	2 cut(s)	217, 231
Bsp143I	GATC	4 cut(s)	19, 242, 682, 796
BspACI	CCGC	3 cut(s)	80, 295, 665
BspANI	GGCC	2 cut(s)	75, 453
BspDI	ATCGAT	1 cut(s)	491
BspLI	GGNNCC	1 cut(s)	838
BspMAI	CTGCAG	1 cut(s)	517
BspOI	GCTAGC	1 cut(s)	147
BspPI	GGATC	1 cut(s)	250
BspQI	GCTCTTC	1 cut(s)	283
BsrDI	GCAATG	3 cut(s)	333, 522, 667
BsrI	ACTGG	1 cut(s)	651
BssECI	CCNNGG	1 cut(s)	361
BssMI	GATC	4 cut(s)	19, 242, 682, 796
BssNAI	GTATAC	1 cut(s)	52
BssSI	CACGAG	1 cut(s)	339
Bst1107I	GTATAC	1 cut(s)	52
Bst2BI	CACGAG	1 cut(s)	339
Bst4CI	ACNGT	2 cut(s)	49, 362
Bst6I	CTCTTC	2 cut(s)	186, 283
BstC8I	GCNNGC	1 cut(s)	145
BstDEI	CTNAG	1 cut(s)	98
BstDSI	CCRYGG	1 cut(s)	361
BstF5I	GGATG	1 cut(s)	597
BstKTI	GATC	4 cut(s)	22, 245, 685, 799
BstMAI	GTCTC	1 cut(s)	648
BstMBI	GATC	4 cut(s)	19, 242, 682, 796
BstNSI	RCATGY	1 cut(s)	235
BstSFI	CTRYAG	1 cut(s)	513
BstX2I	RGATCY	1 cut(s)	682
BstYI	RGATCY	1 cut(s)	682
BstZ17I	GTATAC	1 cut(s)	52
Bsu15I	ATCGAT	1 cut(s)	491
BsuI	GTATCC	1 cut(s)	512
BsuRI	GGCC	2 cut(s)	75, 453
BsuTUI	ATCGAT	1 cut(s)	491
BtgI	CCRYGG	1 cut(s)	361
BtsCI	GGATG	1 cut(s)	597
BtsI	GCAGTG	1 cut(s)	93
BtsIMutI	CAGTG	2 cut(s)	93, 658
Cac8I	GCNNGC	1 cut(s)	145
Cfr13I	GGNCC	1 cut(s)	836
ClaI	ATCGAT	1 cut(s)	491
CviAII	CATG	3 cut(s)	232, 469, 901
DdeI	CTNAG	1 cut(s)	98
DpnI	GATC	4 cut(s)	21, 244, 684, 798
DpnII	GATC	4 cut(s)	19, 242, 682, 796
Eam1104I	CTCTTC	2 cut(s)	186, 283
EarI	CTCTTC	2 cut(s)	186, 283
Ecl136II	GAGCTC	1 cut(s)	215
Eco24I	GRGCYC	1 cut(s)	217
Eco32I	GATATC	1 cut(s)	441
Eco47I	GGWCC	1 cut(s)	836
Eco53kI	GAGCTC	1 cut(s)	215
Eco57I	CTGAAG	2 cut(s)	264, 903
EcoICRI	GAGCTC	1 cut(s)	215
EcoO109I	RGGNCCY	1 cut(s)	836
EcoRV	GATATC	1 cut(s)	441
EcoT22I	ATGCAT	1 cut(s)	470
EcoT38I	GRGCYC	1 cut(s)	217
FaeI	CATG	3 cut(s)	235, 472, 904
FalI	AAGNNNNNCTT	4 cut(s)	825, 857, 857, 889
FaqI	GGGAC	1 cut(s)	889
FatI	CATG	3 cut(s)	231, 468, 900
FblI	GTMKAC	1 cut(s)	51
Fnu4HI	GCNGC	1 cut(s)	295
FokI	GGATG	1 cut(s)	604
FriOI	GRGCYC	1 cut(s)	217
Fsp4HI	GCNGC	1 cut(s)	295
FspBI	CTAG	7 cut(s)	144, 347, 497, 596, 686, 692, 770
GluI	GCNGC	1 cut(s)	295
HaeIII	GGCC	2 cut(s)	75, 453
Hin1II	CATG	3 cut(s)	235, 472, 904
HinfI	GANTC	4 cut(s)	104, 178, 632, 890
Hpy166II	GTNNAC	2 cut(s)	52, 344
Hpy188III	TCNNGA	3 cut(s)	416, 602, 686
Hpy8I	GTNNAC	2 cut(s)	52, 344
HpyAV	CCTTC	6 cut(s)	103, 194, 469, 797, 827, 851
HpyCH4III	ACNGT	2 cut(s)	49, 362
HpyCH4V	TGCA	9 cut(s)	326, 358, 468, 515, 527, 617, 672, 777, 896
HpyF3I	CTNAG	1 cut(s)	98
Hsp92II	CATG	3 cut(s)	235, 472, 904
Kzo9I	GATC	4 cut(s)	19, 242, 682, 796
LguI	GCTCTTC	1 cut(s)	283
LpnPI	CCDG	6 cut(s)	170, 401, 501, 543, 664, 906
LweI	GCATC	2 cut(s)	483, 582
MaeI	CTAG	7 cut(s)	144, 347, 497, 596, 686, 692, 770
MaeIII	GTNAC	2 cut(s)	175, 368
MalI	GATC	4 cut(s)	21, 244, 684, 798
MboI	GATC	4 cut(s)	19, 242, 682, 796
MboII	GAAGA	7 cut(s)	134, 173, 270, 404, 709, 896, 899
MflI	RGATCY	1 cut(s)	682
MhlI	GDGCHC	2 cut(s)	217, 231
MluCI	AATT	6 cut(s)	125, 254, 321, 378, 625, 855
MlyI	GAGTC	1 cut(s)	172
MmeI	TCCRAC	2 cut(s)	228, 810
MnlI	CCTC	4 cut(s)	500, 548, 721, 879
Mph1103I	ATGCAT	1 cut(s)	470
MroXI	GAANNNNTTC	1 cut(s)	660
MseI	TTAA	1 cut(s)	540
MslI	CAYNNNNRTG	1 cut(s)	651
Mva1269I	GAATGC	1 cut(s)	777
NdeII	GATC	4 cut(s)	19, 242, 682, 796
NheI	GCTAGC	1 cut(s)	143
NlaIII	CATG	3 cut(s)	235, 472, 904
NlaIV	GGNNCC	1 cut(s)	838
NmuCI	GTSAC	1 cut(s)	175
NsiI	ATGCAT	1 cut(s)	470
NspI	RCATGY	1 cut(s)	235
PciSI	GCTCTTC	1 cut(s)	283
PctI	GAATGC	1 cut(s)	777
PdmI	GAANNNNTTC	1 cut(s)	660
PfeI	GAWTC	3 cut(s)	104, 632, 890
PkrI	GCNGC	1 cut(s)	296
PleI	GAGTC	1 cut(s)	172
PpsI	GAGTC	1 cut(s)	172
PpuMI	RGGWCCY	1 cut(s)	836
PsiI	TTATAA	1 cut(s)	267
Psp124BI	GAGCTC	1 cut(s)	217
Psp5II	RGGWCCY	1 cut(s)	836
PspN4I	GGNNCC	1 cut(s)	838
PspPI	GGNCC	1 cut(s)	836
PspPPI	RGGWCCY	1 cut(s)	836
PstI	CTGCAG	1 cut(s)	517
PsuI	RGATCY	1 cut(s)	682
RseI	CAYNNNNRTG	1 cut(s)	651
SacI	GAGCTC	1 cut(s)	217
SapI	GCTCTTC	1 cut(s)	283
SaqAI	TTAA	1 cut(s)	540
SatI	GCNGC	1 cut(s)	295
Sau3AI	GATC	4 cut(s)	19, 242, 682, 796
Sau96I	GGNCC	1 cut(s)	836
SchI	GAGTC	1 cut(s)	172
SduI	GDGCHC	2 cut(s)	217, 231
SetI	ASST	5 cut(s)	37, 66, 217, 587, 693
SfaNI	GCATC	2 cut(s)	483, 582
SfcI	CTRYAG	1 cut(s)	513
SinI	GGWCC	1 cut(s)	836
SmiMI	CAYNNNNRTG	1 cut(s)	651
Sse9I	AATT	6 cut(s)	125, 254, 321, 378, 625, 855
SsiI	CCGC	3 cut(s)	80, 295, 665
SspMI	CTAG	7 cut(s)	144, 347, 497, 596, 686, 692, 770
SstI	GAGCTC	1 cut(s)	217
TaaI	ACNGT	2 cut(s)	49, 362
TaqI	TCGA	3 cut(s)	107, 491, 799
TasI	AATT	6 cut(s)	125, 254, 321, 378, 625, 855
TauI	GCSGC	1 cut(s)	297
TfiI	GAWTC	3 cut(s)	104, 632, 890
Tru1I	TTAA	1 cut(s)	540
Tru9I	TTAA	1 cut(s)	540
TscAI	CASTG	2 cut(s)	93, 658
TseFI	GTSAC	1 cut(s)	175
Tsp45I	GTSAC	1 cut(s)	175
TspDTI	ATGAA	5 cut(s)	150, 213, 247, 300, 833
TspRI	CASTG	2 cut(s)	93, 658
VpaK11BI	GGWCC	1 cut(s)	836
XapI	RAATTY	4 cut(s)	125, 254, 378, 625
XbaI	TCTAGA	1 cut(s)	685
XceI	RCATGY	1 cut(s)	235
XmiI	GTMKAC	1 cut(s)	51
XmnI	GAANNNNTTC	1 cut(s)	660
XspI	CTAG	7 cut(s)	144, 347, 497, 596, 686, 692, 770
Zsp2I	ATGCAT	1 cut(s)	470

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.