Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0009558

Physical Location & Seq

Genomic Coordinates Forward (+)

41596462 .. 41598648

Gene Structure 2187 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG231900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1269 bp

ATGTTGAGGGCGGTTCTGATCGTGTACGGGGAGTGGCAGGATACCCACATGGAGGTGAGGTACACTGACATCGATTACGTGGTGTTTTCGGACGCAGCTTCACTAGTGGCTTCTGGTAAATCCCCATTTGAGAGATCCACCTACAGGTACTCTCCTCTGCTCGCGTTTTTGCTCCTACCCAATTCGATTCTTCATCGCTCTTGGGGTAAATTCATCTTCTCAGCTGCAGATTTGCTTGTGGGTTTGTTTATACGGACCATATTGAAGCTTCGCGGGGTGCCGGAGAATCTGTCTATGATTTCTGTGATGGCTTGGCTGTTTAATCCGTTTACGTTTACGATTGGGACTCGTGGAAACTGTGAGCCCATTGTTTGTGCTTTGATTCTTTGGGTCTTTATATGTCTCATGAACGGACGTGTGTTACAAGCGGCATTTTGGTATGGACTTGTTGTCCACTTCCGAGTCTACCCCATTATCTATGCACTCCCTATTCTTCTGATTCTTGATCCTCATGTGTTTCGACCCGGTCAGAAACCTAGCCTTCAACGCTGGGATCATCAACAAGAATCACCTCAAAGCAGCTTTAAATCGAGACTTGCCTATCTGCTTCGGCCATGGTTAATTGTGAGAAGTGCATTTACACGAGACAGGATACTTTTTTCTCTCATATCTGGGGCCATATTCTTCCTTTTCACCGGTCTTTTCTATCATCTATATGGGTGGCATTTCCTGCACGAGTCACTGCTATATCATCTTACTCGTACTGATCCAAGGCACAATTTTTCCATTTATTTTTATCACATCTACCTTCAATATGAGCATAAAATCTCGGTACTGGAGAAGCTCATCTCATTTTTGCCTCAGTTGATAGTTCAGCTTGTTCTCATTCTGAGTTTCGCACAAGACCTTCCATTCTGCTGCTTTGTGCAGACAGTGGCATTTGTGGCATTCAACAAGGTAATGACTGCACAATACTTTGTCTGGTTTTTCTGCCTCTTGCCGCTGTCACTTGCTTGGAGCAATCTGAAGCTTAAATGGAAAGGCTTATCTTGCATAGCATTGTGGGTAGGTGGTCAACTTCATTGGTTGTGGTGGGGTTATATGCATGAGTTCAAGGGACGGAATGTCTTTCTTCAGCTGTGGGTGGCCGGCATCATGTTCCTATCTGCAAACACATATGTTTTGGTTTCACTCATCAATCATCACAGATGTTCTCCTGTTTTCACACGATTGGATAAAACCCTCGAGGGTGCGAAGAAATTGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00563 ko01100 map00563 map01100

Pfam Domains

Protein Families

Mannosyl_trans

Protein Analysis

422

Amino Acids

49.35

Weight (kDa)

9.52

Isoelectric Point (pI)

40.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PIG-U	PF06728	28 - 336	2.1e-11	GPI transamidase subunit PIG-U
Mannosyl_trans	PF05007	114 - 399	5.4e-71	Mannosyltransferase (PIG-M)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009558)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22130 AT5G22130 AT5G22130
fragaria_vesca	FvH4_2g15820 FvH4_2g15820
malus_domestica	MD05G1127200.v1.1 MD10G1130600.v1.1
prunus_persica	Prupe.8G170900_v2.0.a1
pyrus_communis	pycom05g12300 pycom10g11190
rosa_chinensis	RchiOBHm_Chr6g0279191
rosa_laevigata	RLG00000013156
rosa_multiflora	Rmu_sc0014203.1_g000010 Rmu_sc0014536.1_g000005
rosa_roxburghii	Rroxscaffold_7G00189040
rosa_rugosa	Rorug06G0123600 Rorug06G0123700
rosa_samantha	Rh6AG231900 Rh6BG236800 Rh6CG238700 Rh6DG230300
rosa_wichuraiana	Rw6G020300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	1244
AccB1I	GGYRCC	1 cut(s)	277
AccI	GTMKAC	1 cut(s)	465
AccII	CGCG	2 cut(s)	164, 273
AciI	CCGC	4 cut(s)	11, 273, 428, 1001
AclWI	GGATC	4 cut(s)	129, 500, 561, 761
AcoI	YGGCCR	2 cut(s)	611, 1146
AcsI	RAATTY	1 cut(s)	209
AcuI	CTGAAG	2 cut(s)	1046, 1118
AfaI	GTAC	5 cut(s)	26, 62, 149, 763, 834
AfiI	CCNNNNNNNGG	2 cut(s)	52, 144
AflIII	ACRYGT	1 cut(s)	415
AgeI	ACCGGT	1 cut(s)	695
AgsI	TTSAA	6 cut(s)	265, 545, 812, 952, 1114, 1264
AhdI	GACNNNNNGTC	2 cut(s)	449, 1124
AhlI	ACTAGT	1 cut(s)	103
AjiI	CACGTC	1 cut(s)	416
AluBI	AGCT	8 cut(s)	98, 224, 268, 582, 844, 877, 1030, 1138
AluI	AGCT	8 cut(s)	98, 224, 268, 582, 844, 877, 1030, 1138
Alw26I	GTCTC	3 cut(s)	407, 586, 639
AlwI	GGATC	4 cut(s)	129, 500, 561, 761
Ama87I	CYCGRG	1 cut(s)	1244
AoxI	GGCC	3 cut(s)	611, 675, 1146
ApeKI	GCWGC	4 cut(s)	95, 224, 579, 918
ApoI	RAATTY	1 cut(s)	209
AsiGI	ACCGGT	1 cut(s)	695
AspS9I	GGNCC	2 cut(s)	255, 675
AsuC2I	CCSGG	1 cut(s)	525
AsuHPI	GGTGA	3 cut(s)	67, 561, 685
AvaI	CYCGRG	1 cut(s)	1244
AvaII	GGWCC	1 cut(s)	255
BanI	GGYRCC	1 cut(s)	277
BanII	GRGCYC	1 cut(s)	366
BarI	GAAGNNNNNNTAC	2 cut(s)	622, 654
BauI	CACGAG	3 cut(s)	348, 642, 734
BbvI	GCAGC	4 cut(s)	107, 211, 591, 905
BccI	CCATC	1 cut(s)	301
BciVI	GTATCC	2 cut(s)	34, 645
BcnI	CCSGG	1 cut(s)	525
BcoDI	GTCTC	3 cut(s)	407, 586, 639
BcuI	ACTAGT	1 cut(s)	103
BfaI	CTAG	2 cut(s)	104, 537
BfmI	CTRYAG	2 cut(s)	142, 225
BfuI	GTATCC	2 cut(s)	34, 645
BisI	GCNGC	6 cut(s)	96, 225, 429, 580, 919, 1001
BlsI	GCNGC	6 cut(s)	97, 226, 430, 581, 920, 1002
Bme1390I	CCNGG	1 cut(s)	525
Bme18I	GGWCC	1 cut(s)	255
BmeRI	GACNNNNNGTC	2 cut(s)	449, 1124
BmeT110I	CYCGRG	1 cut(s)	1244
BmgBI	CACGTC	1 cut(s)	416
BmgT120I	GGNCC	2 cut(s)	255, 675
BmiI	GGNNCC	2 cut(s)	279, 676
BmrFI	CCNGG	1 cut(s)	525
BmsI	GCATC	1 cut(s)	1161
BpmI	CTGGAG	1 cut(s)	857
BpuMI	CCSGG	1 cut(s)	525
Bsa29I	ATCGAT	1 cut(s)	72
BsaAI	YACGTR	1 cut(s)	79
BsaJI	CCNNGG	2 cut(s)	614, 770
BsaWI	WCCGGW	1 cut(s)	695
BsaXI	ACNNNNNCTCC	4 cut(s)	44, 74, 275, 305
Bsc4I	CCNNNNNNNGG	2 cut(s)	52, 144
Bse118I	RCCGGY	2 cut(s)	695, 1148
Bse1I	ACTGG	1 cut(s)	840
BseCI	ATCGAT	1 cut(s)	72
BseDI	CCNNGG	2 cut(s)	614, 770
BseLI	CCNNNNNNNGG	2 cut(s)	52, 144
BseMII	CTCAG	3 cut(s)	234, 875, 881
BseNI	ACTGG	1 cut(s)	840
BseRI	GAGGAG	1 cut(s)	144
BseXI	GCAGC	4 cut(s)	107, 211, 591, 905
BseYI	CCCAGC	1 cut(s)	549
BsgI	GTGCAG	3 cut(s)	716, 947, 951
Bsh1236I	CGCG	2 cut(s)	164, 273
BshFI	GGCC	3 cut(s)	613, 677, 1148
BshNI	GGYRCC	1 cut(s)	277
BshTI	ACCGGT	1 cut(s)	695
BshVI	ATCGAT	1 cut(s)	72
BsiHKCI	CYCGRG	1 cut(s)	1244
BsiSI	CCGG	4 cut(s)	281, 525, 696, 1149
BslFI	GGGAC	2 cut(s)	358, 1131
BslI	CCNNNNNNNGG	2 cut(s)	52, 144
BsmAI	GTCTC	3 cut(s)	407, 586, 639
BsmFI	GGGAC	2 cut(s)	358, 1131
BsmI	GAATGC	1 cut(s)	947
BsnI	GGCC	3 cut(s)	613, 677, 1148
BsoBI	CYCGRG	1 cut(s)	1244
Bsp1286I	GDGCHC	1 cut(s)	366
Bsp143I	GATC	5 cut(s)	18, 134, 505, 553, 766
Bsp19I	CCATGG	1 cut(s)	614
BspACI	CCGC	4 cut(s)	11, 273, 428, 1001
BspANI	GGCC	3 cut(s)	613, 677, 1148
BspCNI	CTCAG	3 cut(s)	233, 874, 882
BspDI	ATCGAT	1 cut(s)	72
BspFNI	CGCG	2 cut(s)	164, 273
BspHI	TCATGA	1 cut(s)	405
BspLI	GGNNCC	2 cut(s)	279, 676
BspMAI	CTGCAG	1 cut(s)	229
BspPI	GGATC	4 cut(s)	129, 500, 561, 761
BspT107I	GGYRCC	1 cut(s)	277
BsrFI	RCCGGY	2 cut(s)	695, 1148
BsrI	ACTGG	1 cut(s)	840
BssAI	RCCGGY	2 cut(s)	695, 1148
BssECI	CCNNGG	2 cut(s)	614, 770
BssMI	GATC	5 cut(s)	18, 134, 505, 553, 766
BssSI	CACGAG	3 cut(s)	348, 642, 734
BssT1I	CCWWGG	2 cut(s)	614, 770
Bst2BI	CACGAG	3 cut(s)	348, 642, 734
Bst4CI	ACNGT	2 cut(s)	359, 934
BstAPI	GCANNNNNTGC	1 cut(s)	730
BstBAI	YACGTR	1 cut(s)	79
BstC8I	GCNNGC	2 cut(s)	162, 1150
BstDEI	CTNAG	3 cut(s)	220, 861, 890
BstDSI	CCRYGG	1 cut(s)	614
BstFNI	CGCG	2 cut(s)	164, 273
BstKTI	GATC	5 cut(s)	21, 137, 508, 556, 769
BstMAI	GTCTC	3 cut(s)	407, 586, 639
BstMBI	GATC	5 cut(s)	18, 134, 505, 553, 766
BstMWI	GCNNNNNNNGC	4 cut(s)	546, 730, 944, 1050
BstSCI	CCNGG	1 cut(s)	523
BstSFI	CTRYAG	2 cut(s)	142, 225
BstUI	CGCG	2 cut(s)	164, 273
BstV1I	GCAGC	4 cut(s)	107, 211, 591, 905
BstX2I	RGATCY	1 cut(s)	134
BstYI	RGATCY	1 cut(s)	134
Bsu15I	ATCGAT	1 cut(s)	72
BsuI	GTATCC	2 cut(s)	34, 645
BsuRI	GGCC	3 cut(s)	613, 677, 1148
BsuTUI	ATCGAT	1 cut(s)	72
BtgI	CCRYGG	1 cut(s)	614
BtgZI	GCGATG	1 cut(s)	179
BtrI	CACGTC	1 cut(s)	416
BtsI	GCAGTG	1 cut(s)	740
BtsIMutI	CAGTG	3 cut(s)	63, 740, 939
Cac8I	GCNNGC	2 cut(s)	162, 1150
CciI	TCATGA	1 cut(s)	405
Cfr10I	RCCGGY	2 cut(s)	695, 1148
Cfr13I	GGNCC	2 cut(s)	255, 675
ClaI	ATCGAT	1 cut(s)	72
CseI	GACGC	1 cut(s)	101
Csp6I	GTAC	5 cut(s)	25, 61, 148, 762, 833
CspAI	ACCGGT	1 cut(s)	695
CviAII	CATG	6 cut(s)	49, 406, 512, 615, 1106, 1156
CviQI	GTAC	5 cut(s)	25, 61, 148, 762, 833
DdeI	CTNAG	3 cut(s)	220, 861, 890
DpnI	GATC	5 cut(s)	20, 136, 507, 555, 768
DpnII	GATC	5 cut(s)	18, 134, 505, 553, 766
DraI	TTTAAA	1 cut(s)	586
DriI	GACNNNNNGTC	2 cut(s)	449, 1124
EaeI	YGGCCR	2 cut(s)	611, 1146
Eam1105I	GACNNNNNGTC	2 cut(s)	449, 1124
Eco130I	CCWWGG	2 cut(s)	614, 770
Eco24I	GRGCYC	1 cut(s)	366
Eco47I	GGWCC	1 cut(s)	255
Eco57I	CTGAAG	2 cut(s)	1046, 1118
Eco88I	CYCGRG	1 cut(s)	1244
EcoT14I	CCWWGG	2 cut(s)	614, 770
EcoT22I	ATGCAT	1 cut(s)	1107
EcoT38I	GRGCYC	1 cut(s)	366
ErhI	CCWWGG	2 cut(s)	614, 770
FaeI	CATG	6 cut(s)	52, 409, 515, 618, 1109, 1159
FaqI	GGGAC	2 cut(s)	358, 1131
FatI	CATG	6 cut(s)	48, 405, 511, 614, 1105, 1155
FauI	CCCGC	1 cut(s)	266
FauNDI	CATATG	1 cut(s)	1177
FblI	GTMKAC	1 cut(s)	465
Fnu4HI	GCNGC	6 cut(s)	96, 225, 429, 580, 919, 1001
FriOI	GRGCYC	1 cut(s)	366
Fsp4HI	GCNGC	6 cut(s)	96, 225, 429, 580, 919, 1001
FspBI	CTAG	2 cut(s)	104, 537
GluI	GCNGC	6 cut(s)	96, 225, 429, 580, 919, 1001
GsaI	CCCAGC	1 cut(s)	553
GsuI	CTGGAG	1 cut(s)	857
HaeIII	GGCC	3 cut(s)	613, 677, 1148
HapII	CCGG	4 cut(s)	281, 525, 696, 1149
HgaI	GACGC	1 cut(s)	101
Hin1II	CATG	6 cut(s)	52, 409, 515, 618, 1109, 1159
HincII	GTYRAC	1 cut(s)	1076
HindII	GTYRAC	1 cut(s)	1076
HindIII	AAGCTT	2 cut(s)	266, 1028
HinfI	GANTC	8 cut(s)	187, 286, 346, 382, 462, 499, 566, 737
HpaII	CCGG	4 cut(s)	281, 525, 696, 1149
HphI	GGTGA	3 cut(s)	67, 561, 685
Hpy166II	GTNNAC	7 cut(s)	25, 63, 330, 336, 454, 466, 1076
Hpy188I	TCNGA	7 cut(s)	18, 91, 461, 498, 531, 891, 1026
Hpy188III	TCNNGA	3 cut(s)	406, 503, 591
Hpy8I	GTNNAC	7 cut(s)	25, 63, 330, 336, 454, 466, 1076
HpyAV	CCTTC	3 cut(s)	551, 818, 917
HpyCH4III	ACNGT	2 cut(s)	359, 934
HpyCH4IV	ACGT	3 cut(s)	78, 332, 415
HpyCH4V	TGCA	9 cut(s)	227, 482, 635, 733, 928, 968, 1053, 1105, 1169
HpyF10VI	GCNNNNNNNGC	4 cut(s)	546, 730, 944, 1050
HpyF3I	CTNAG	3 cut(s)	220, 861, 890
HpySE526I	ACGT	3 cut(s)	78, 332, 415
Hsp92II	CATG	6 cut(s)	52, 409, 515, 618, 1109, 1159
KroI	GCCGGC	1 cut(s)	1148
KroNI	GCCGGC	1 cut(s)	1150
Kzo9I	GATC	5 cut(s)	18, 134, 505, 553, 766
LmnI	GCTCC	2 cut(s)	177, 1017
Lsp1109I	GCAGC	4 cut(s)	107, 211, 591, 905
LweI	GCATC	1 cut(s)	1161
MaeI	CTAG	2 cut(s)	104, 537
MaeII	ACGT	3 cut(s)	78, 332, 415
MaeIII	GTNAC	3 cut(s)	420, 738, 1005
MalI	GATC	5 cut(s)	20, 136, 507, 555, 768
MboI	GATC	5 cut(s)	18, 134, 505, 553, 766
MboII	GAAGA	6 cut(s)	182, 208, 485, 676, 1124, 1267
MflI	RGATCY	1 cut(s)	134
MhlI	GDGCHC	1 cut(s)	366
MluCI	AATT	5 cut(s)	181, 209, 621, 778, 1259
MlyI	GAGTC	3 cut(s)	340, 471, 746
MnlI	CCTC	9 cut(s)	46, 51, 165, 519, 582, 870, 1004, 1240, 1253
Mph1103I	ATGCAT	1 cut(s)	1107
MroNI	GCCGGC	1 cut(s)	1148
MseI	TTAA	4 cut(s)	321, 585, 620, 1032
MslI	CAYNNNNRTG	2 cut(s)	53, 714
MspA1I	CMGCKG	3 cut(s)	224, 1003, 1138
MspI	CCGG	4 cut(s)	281, 525, 696, 1149
MspR9I	CCNGG	1 cut(s)	525
Mva1269I	GAATGC	1 cut(s)	947
MvnI	CGCG	2 cut(s)	164, 273
MwoI	GCNNNNNNNGC	4 cut(s)	546, 730, 944, 1050
NaeI	GCCGGC	1 cut(s)	1150
NciI	CCSGG	1 cut(s)	525
NcoI	CCATGG	1 cut(s)	614
NdeI	CATATG	1 cut(s)	1177
NdeII	GATC	5 cut(s)	18, 134, 505, 553, 766
NgoMIV	GCCGGC	1 cut(s)	1148
NlaIII	CATG	6 cut(s)	52, 409, 515, 618, 1109, 1159
NlaIV	GGNNCC	2 cut(s)	279, 676
NmuCI	GTSAC	2 cut(s)	738, 1005
NsiI	ATGCAT	1 cut(s)	1107
PaeR7I	CTCGAG	1 cut(s)	1244
PagI	TCATGA	1 cut(s)	405
PctI	GAATGC	1 cut(s)	947
PdiI	GCCGGC	1 cut(s)	1150
PfeI	GAWTC	5 cut(s)	187, 286, 382, 499, 566
PflFI	GACNNNGTC	1 cut(s)	525
PinAI	ACCGGT	1 cut(s)	695
PkrI	GCNGC	6 cut(s)	97, 226, 430, 581, 920, 1002
PleI	GAGTC	3 cut(s)	340, 470, 745
PpsI	GAGTC	3 cut(s)	340, 470, 745
Ppu21I	YACGTR	1 cut(s)	79
PspFI	CCCAGC	1 cut(s)	549
PspN4I	GGNNCC	2 cut(s)	279, 676
PspPI	GGNCC	2 cut(s)	255, 675
PspXI	VCTCGAGB	1 cut(s)	1244
PstI	CTGCAG	1 cut(s)	229
PsuI	RGATCY	1 cut(s)	134
PsyI	GACNNNGTC	1 cut(s)	525
PvuII	CAGCTG	2 cut(s)	224, 1138
RsaI	GTAC	5 cut(s)	26, 62, 149, 763, 834
RsaNI	GTAC	5 cut(s)	25, 61, 148, 762, 833
RseI	CAYNNNNRTG	2 cut(s)	53, 714
SaqAI	TTAA	4 cut(s)	321, 585, 620, 1032
SatI	GCNGC	6 cut(s)	96, 225, 429, 580, 919, 1001
Sau3AI	GATC	5 cut(s)	18, 134, 505, 553, 766
Sau96I	GGNCC	2 cut(s)	255, 675
SchI	GAGTC	3 cut(s)	340, 471, 746
ScrFI	CCNGG	1 cut(s)	525
SduI	GDGCHC	1 cut(s)	366
SfaNI	GCATC	1 cut(s)	1161
SfcI	CTRYAG	2 cut(s)	142, 225
Sfr274I	CTCGAG	1 cut(s)	1244
SinI	GGWCC	1 cut(s)	255
SlaI	CTCGAG	1 cut(s)	1244
SmiMI	CAYNNNNRTG	2 cut(s)	53, 714
SmlI	CTYRAG	1 cut(s)	1244
SmoI	CTYRAG	1 cut(s)	1244
SpeI	ACTAGT	1 cut(s)	103
Sse9I	AATT	5 cut(s)	181, 209, 621, 778, 1259
SsiI	CCGC	4 cut(s)	11, 273, 428, 1001
SspMI	CTAG	2 cut(s)	104, 537
StyD4I	CCNGG	1 cut(s)	523
StyI	CCWWGG	2 cut(s)	614, 770
TaaI	ACNGT	2 cut(s)	359, 934
TaiI	ACGT	3 cut(s)	81, 335, 418
TaqI	TCGA	5 cut(s)	72, 185, 520, 590, 1245
TasI	AATT	5 cut(s)	181, 209, 621, 778, 1259
TauI	GCSGC	2 cut(s)	431, 1003
TfiI	GAWTC	5 cut(s)	187, 286, 382, 499, 566
Tru1I	TTAA	4 cut(s)	321, 585, 620, 1032
Tru9I	TTAA	4 cut(s)	321, 585, 620, 1032
TscAI	CASTG	3 cut(s)	70, 747, 939
TseFI	GTSAC	2 cut(s)	738, 1005
TseI	GCWGC	4 cut(s)	95, 224, 579, 918
Tsp45I	GTSAC	2 cut(s)	738, 1005
TspDTI	ATGAA	4 cut(s)	182, 202, 422, 1070
TspGWI	ACGGA	4 cut(s)	268, 315, 426, 1135
TspRI	CASTG	3 cut(s)	70, 747, 939
Tth111I	GACNNNGTC	1 cut(s)	525
VpaK11BI	GGWCC	1 cut(s)	255
XapI	RAATTY	1 cut(s)	209
XhoI	CTCGAG	1 cut(s)	1244
XmiI	GTMKAC	1 cut(s)	465
XspI	CTAG	2 cut(s)	104, 537
Zsp2I	ATGCAT	1 cut(s)	1107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.