pycom10g11190

GPI mannosyltransferase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
Physical Location & Seq
Forward (+)
14725163 .. 14727511
2349 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g11190.1

Sequence Viewer

Length: 1311 bp
ATGGCGCCCATACAATTCCGTGCGCTCCTCATCGTCTCGGCGGTGCTGAGGGTGGTTTTAATCCTGTACGGAGAGTGGCAGGATGCCCACATGGAGGTGAGGTACACAGACGTCGATTACATAGTCTTCTCGGACGCAGCTTCTCTAATGGCGTCTGGTAAATCCCCATTTCAGAGATCCACTTACAGATACTCTCCTCTGCTCGCCCTTCTGCTCCTACCCAATTCCATTCTCCATCGCTCTTGGGGCAAATTCATCTTCTCGGCTGCAGATTTGCTTGTGGGTTTGTTTATAAGGATCATTCTGAAGCTTCGCGGGGTGTCGGAGAAATTGAGCATGATTTCTGTGATTGTTTGGCTCTTTAATCCGTTTACTTTTACGATTGGGACTCGAGGGAATTGTGAGCCAATTGTTTGTGCTTTGGTTCTTTGGGTCTTCGTATGTCTTATGAACGGACGTGTGTTACAAGCTGCATTTTGGTATGGGCTTGTTGTCCACTTCAGAATCTACCCCATTATCTATGCACTCCCTATCCTTGTGATTATGGATCCACATGTGTTTCGACCTGGTCAGAAGCCTAGACTTCAATATTGGAATCGTCGGCAAGATTCACCTCAAAGCAGTTCTGTTACAAGACTCACTCAGCTTCTTTGGCCATGGTTTCTTTTGAAAAGTGCATTAACACGAGAAAGATTACTTTTCTCCTTTATATCTGCGGCCGTATTCTTCCTTTTCACTGGTTTATTCTATCATCTGTATGGGTGGGATTTCCTGTATGAAGCACTGTTGTATCATCTTACCCGTACTGATCCAAGGCACAATTTTTCCATTTACTTTTATCACATCTACCTTCAGTACCACCGTAAACTTTCGATATTGGAGAAACTCGTCTCATTTTTGCCTCAGTTGATAGTCCAGGTTGTTCTTGTTTTTAGTTTCGCCAAAGACCTTCCATTCTGCTGCTTAGTACAGACAGTGGCTTTCGTGGCTTTCAACAAGGTCATGACTGCACAATACTTTGTGTGGTTCTTTTGTCTCTTGCCGCTGGTTCTCGCTTGGAGCAACATGAAGCTTAAATGGAAAGGCCTATCGTGCATCGCATTGTGGGTAGGCGGTCAACTTCATTGGTTGTTTTGGGGTTATATGCTTGAGTTCAAAGGGCAAAATGTCTTTCTTCAACTCTGGATGGCAAGCATCATATTCTTAGCTGCGAACACGTACGTCTTAGTTTCGCTCATCCGCGACCACAGATTTTCTCAAGTTTTCGCACGGTTGGAGAAAACCTCCAAGGACTCGAAGAAACTTAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

437

Amino Acids

51.03

Weight (kDa)

9.79

Isoelectric Point (pI)

34.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PIG-U PF06728 26 - 357 5e-10 GPI transamidase subunit PIG-U
Mannosyl_trans PF05007 128 - 413 8.7e-73 Mannosyltransferase (PIG-M)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 293
AatII GACGTC 1 cut(s) 114
AccB1I GGYRCC 1 cut(s) 4
AccII CGCG 2 cut(s) 315, 1242
AciI CCGC 6 cut(s) 41, 315, 716, 1043, 1113, 1240
AclWI GGATC 5 cut(s) 171, 305, 542, 555, 803
AcoI YGGCCR 2 cut(s) 653, 717
AcsI RAATTY 1 cut(s) 251
AcuI CTGAAG 3 cut(s) 326, 484, 836
AcyI GRCGYC 3 cut(s) 5, 111, 152
AfaI GTAC 6 cut(s) 68, 104, 805, 857, 969, 1220
AfiI CCNNNNNNNGG 1 cut(s) 94
AflII CTTAAG 1 cut(s) 1304
AflIII ACRYGT 3 cut(s) 457, 553, 1215
AgsI TTSAA 5 cut(s) 587, 670, 994, 1156, 1178
AjiI CACGTC 1 cut(s) 458
AjnI CCWGG 2 cut(s) 565, 915
AluBI AGCT 6 cut(s) 140, 310, 470, 646, 1072, 1208
AluI AGCT 6 cut(s) 140, 310, 470, 646, 1072, 1208
Alw26I GTCTC 3 cut(s) 40, 895, 1040
AlwI GGATC 5 cut(s) 171, 305, 542, 555, 803
Ama87I CYCGRG 1 cut(s) 390
AoxI GGCC 3 cut(s) 653, 717, 1084
ApeKI GCWGC 5 cut(s) 137, 266, 470, 960, 1208
ApoI RAATTY 1 cut(s) 251
AspLEI GCGC 2 cut(s) 7, 25
AsuHPI GGTGA 2 cut(s) 109, 603
AvaI CYCGRG 1 cut(s) 390
BaeI ACNNNNGTAYC 2 cut(s) 773, 806
BalI TGGCCA 1 cut(s) 655
BamHI GGATCC 1 cut(s) 547
BanI GGYRCC 1 cut(s) 4
BauI CACGAG 1 cut(s) 684
BbsI GAAGAC 2 cut(s) 118, 427
BbvCI CCTCAGC 1 cut(s) 47
BbvI GCAGC 5 cut(s) 149, 253, 457, 947, 1195
BccI CCATC 2 cut(s) 243, 1180
BceAI ACGGC 1 cut(s) 704
BciT130I CCWGG 2 cut(s) 567, 917
BcoDI GTCTC 3 cut(s) 40, 895, 1040
BfaI CTAG 1 cut(s) 579
BfmI CTRYAG 1 cut(s) 267
BfoI RGCGCY 1 cut(s) 8
BfrI CTTAAG 1 cut(s) 1304
BisI GCNGC 7 cut(s) 138, 267, 471, 717, 961, 1043, 1209
BlsI GCNGC 7 cut(s) 139, 268, 472, 718, 962, 1044, 1210
Bme1390I CCNGG 2 cut(s) 567, 917
BmeT110I CYCGRG 1 cut(s) 390
BmgBI CACGTC 1 cut(s) 458
BmiI GGNNCC 2 cut(s) 6, 549
BmrFI CCNGG 2 cut(s) 567, 917
BmsI GCATC 3 cut(s) 73, 1104, 1203
BpiI GAAGAC 2 cut(s) 118, 427
BplI GAGNNNNNCTC 2 cut(s) 1268, 1300
Bpu10I CCTNAGC 1 cut(s) 47
BpuEI CTTGAG 2 cut(s) 1169, 1242
BsaAI YACGTR 1 cut(s) 1218
BsaHI GRCGYC 3 cut(s) 5, 111, 152
BsaJI CCNNGG 3 cut(s) 656, 812, 1287
BsaXI ACNNNNNCTCC 2 cut(s) 86, 116
Bsc4I CCNNNNNNNGG 1 cut(s) 94
Bse1I ACTGG 1 cut(s) 742
BseBI CCWGG 2 cut(s) 567, 917
BseDI CCNNGG 3 cut(s) 656, 812, 1287
BseGI GGATG 3 cut(s) 88, 1191, 1236
BseLI CCNNNNNNNGG 1 cut(s) 94
BseMII CTCAG 3 cut(s) 38, 656, 917
BseNI ACTGG 1 cut(s) 742
BseRI GAGGAG 2 cut(s) 17, 186
BseX3I CGGCCG 1 cut(s) 717
BseXI GCAGC 5 cut(s) 149, 253, 457, 947, 1195
BsgI GTGCAG 1 cut(s) 993
Bsh1236I CGCG 2 cut(s) 315, 1242
Bsh1285I CGRYCG 1 cut(s) 720
BshFI GGCC 3 cut(s) 655, 719, 1086
BshNI GGYRCC 1 cut(s) 4
BsiEI CGRYCG 1 cut(s) 720
BsiHKCI CYCGRG 1 cut(s) 390
BsiWI CGTACG 1 cut(s) 1218
BslFI GGGAC 1 cut(s) 400
BslI CCNNNNNNNGG 1 cut(s) 94
BsmAI GTCTC 3 cut(s) 40, 895, 1040
BsmBI CGTCTC 2 cut(s) 40, 895
BsmFI GGGAC 1 cut(s) 400
BsnI GGCC 3 cut(s) 655, 719, 1086
BsoBI CYCGRG 1 cut(s) 390
Bsp143I GATC 4 cut(s) 176, 297, 547, 808
Bsp19I CCATGG 1 cut(s) 656
BspACI CCGC 6 cut(s) 41, 315, 716, 1043, 1113, 1240
BspANI GGCC 3 cut(s) 655, 719, 1086
BspCNI CTCAG 3 cut(s) 39, 655, 916
BspFNI CGCG 2 cut(s) 315, 1242
BspHI TCATGA 1 cut(s) 1002
BspLI GGNNCC 2 cut(s) 6, 549
BspMAI CTGCAG 1 cut(s) 271
BspPI GGATC 5 cut(s) 171, 305, 542, 555, 803
BspT107I GGYRCC 1 cut(s) 4
BspTI CTTAAG 1 cut(s) 1304
BsrI ACTGG 1 cut(s) 742
BssECI CCNNGG 3 cut(s) 656, 812, 1287
BssMI GATC 4 cut(s) 176, 297, 547, 808
BssNI GRCGYC 3 cut(s) 5, 111, 152
BssSI CACGAG 1 cut(s) 684
BssT1I CCWWGG 3 cut(s) 656, 812, 1287
Bst2BI CACGAG 1 cut(s) 684
Bst2UI CCWGG 2 cut(s) 567, 917
Bst4CI ACNGT 4 cut(s) 786, 863, 976, 1272
BstACI GRCGYC 3 cut(s) 5, 111, 152
BstAFI CTTAAG 1 cut(s) 1304
BstBAI YACGTR 1 cut(s) 1218
BstC8I GCNNGC 2 cut(s) 204, 1192
BstDEI CTNAG 6 cut(s) 47, 642, 903, 964, 1204, 1225
BstDSI CCRYGG 1 cut(s) 656
BstF5I GGATG 3 cut(s) 88, 1191, 1236
BstFNI CGCG 2 cut(s) 315, 1242
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 2 cut(s) 7, 25
BstKTI GATC 4 cut(s) 179, 300, 550, 811
BstMAI GTCTC 3 cut(s) 40, 895, 1040
BstMBI GATC 4 cut(s) 176, 297, 547, 808
BstMCI CGRYCG 1 cut(s) 720
BstMWI GCNNNNNNNGC 4 cut(s) 246, 652, 986, 1092
BstNI CCWGG 2 cut(s) 567, 917
BstNSI RCATGY 1 cut(s) 557
BstSCI CCNGG 2 cut(s) 565, 915
BstSFI CTRYAG 1 cut(s) 267
BstUI CGCG 2 cut(s) 315, 1242
BstV1I GCAGC 5 cut(s) 149, 253, 457, 947, 1195
BstV2I GAAGAC 2 cut(s) 118, 427
BstX2I RGATCY 2 cut(s) 176, 547
BstYI RGATCY 2 cut(s) 176, 547
BstZI CGGCCG 1 cut(s) 717
BsuRI GGCC 3 cut(s) 655, 719, 1086
BtgI CCRYGG 1 cut(s) 656
BtgZI GCGATG 2 cut(s) 221, 1081
BtrI CACGTC 1 cut(s) 458
BtsCI GGATG 3 cut(s) 88, 1191, 1236
BtsIMutI CAGTG 3 cut(s) 735, 782, 981
Cac8I GCNNGC 2 cut(s) 204, 1192
CciI TCATGA 1 cut(s) 1002
CfoI GCGC 2 cut(s) 7, 25
CseI GACGC 2 cut(s) 141, 143
CsiI ACCWGGT 1 cut(s) 565
Csp6I GTAC 6 cut(s) 67, 103, 804, 856, 968, 1219
CviAII CATG 6 cut(s) 91, 337, 554, 657, 1003, 1066
CviQI GTAC 6 cut(s) 67, 103, 804, 856, 968, 1219
DdeI CTNAG 6 cut(s) 47, 642, 903, 964, 1204, 1225
DinI GGCGCC 1 cut(s) 6
DpnI GATC 4 cut(s) 178, 299, 549, 810
DpnII GATC 4 cut(s) 176, 297, 547, 808
EaeI YGGCCR 2 cut(s) 653, 717
EagI CGGCCG 1 cut(s) 717
EclXI CGGCCG 1 cut(s) 717
Eco130I CCWWGG 3 cut(s) 656, 812, 1287
Eco147I AGGCCT 1 cut(s) 1086
Eco52I CGGCCG 1 cut(s) 717
Eco57I CTGAAG 3 cut(s) 326, 484, 836
Eco88I CYCGRG 1 cut(s) 390
EcoRII CCWGG 2 cut(s) 565, 915
EcoT14I CCWWGG 3 cut(s) 656, 812, 1287
EgeI GGCGCC 1 cut(s) 6
EheI GGCGCC 1 cut(s) 6
ErhI CCWWGG 3 cut(s) 656, 812, 1287
Esp3I CGTCTC 2 cut(s) 40, 895
FaeI CATG 6 cut(s) 94, 340, 557, 660, 1006, 1069
FaqI GGGAC 1 cut(s) 400
FatI CATG 6 cut(s) 90, 336, 553, 656, 1002, 1065
FauI CCCGC 1 cut(s) 308
Fnu4HI GCNGC 7 cut(s) 138, 267, 471, 717, 961, 1043, 1209
FokI GGATG 3 cut(s) 95, 1198, 1223
Fsp4HI GCNGC 7 cut(s) 138, 267, 471, 717, 961, 1043, 1209
FspBI CTAG 1 cut(s) 579
GlaI GCGC 2 cut(s) 6, 24
GluI GCNGC 7 cut(s) 138, 267, 471, 717, 961, 1043, 1209
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 3 cut(s) 655, 719, 1086
HgaI GACGC 2 cut(s) 141, 143
HhaI GCGC 2 cut(s) 7, 25
Hin1I GRCGYC 3 cut(s) 5, 111, 152
Hin1II CATG 6 cut(s) 94, 340, 557, 660, 1006, 1069
Hin6I GCGC 2 cut(s) 5, 23
HinP1I GCGC 2 cut(s) 5, 23
HincII GTYRAC 1 cut(s) 1118
HindII GTYRAC 1 cut(s) 1118
HindIII AAGCTT 2 cut(s) 308, 1070
HinfI GANTC 6 cut(s) 388, 504, 595, 608, 636, 1292
HphI GGTGA 2 cut(s) 109, 603
Hpy166II GTNNAC 5 cut(s) 105, 372, 496, 866, 1118
Hpy188I TCNGA 6 cut(s) 133, 174, 306, 325, 503, 573
Hpy188III TCNNGA 2 cut(s) 1003, 1183
Hpy8I GTNNAC 5 cut(s) 105, 372, 496, 866, 1118
Hpy99I CGWCG 2 cut(s) 116, 603
HpyAV CCTTC 3 cut(s) 218, 860, 959
HpyCH4III ACNGT 4 cut(s) 786, 863, 976, 1272
HpyCH4IV ACGT 4 cut(s) 111, 457, 1217, 1221
HpyCH4V TGCA 6 cut(s) 269, 473, 524, 677, 1010, 1095
HpyF10VI GCNNNNNNNGC 4 cut(s) 246, 652, 986, 1092
HpyF3I CTNAG 6 cut(s) 47, 642, 903, 964, 1204, 1225
HpySE526I ACGT 4 cut(s) 111, 457, 1217, 1221
Hsp92I GRCGYC 3 cut(s) 5, 111, 152
Hsp92II CATG 6 cut(s) 94, 340, 557, 660, 1006, 1069
HspAI GCGC 2 cut(s) 5, 23
KasI GGCGCC 1 cut(s) 4
Kzo9I GATC 4 cut(s) 176, 297, 547, 808
LmnI GCTCC 3 cut(s) 30, 219, 1059
Lsp1109I GCAGC 5 cut(s) 149, 253, 457, 947, 1195
LweI GCATC 3 cut(s) 73, 1104, 1203
MabI ACCWGGT 1 cut(s) 565
MaeI CTAG 1 cut(s) 579
MaeII ACGT 4 cut(s) 111, 457, 1217, 1221
MaeIII GTNAC 2 cut(s) 462, 628
MalI GATC 4 cut(s) 178, 299, 549, 810
MboI GATC 4 cut(s) 176, 297, 547, 808
MboII GAAGA 6 cut(s) 118, 250, 427, 718, 1166, 1309
MfeI CAATTG 1 cut(s) 408
MflI RGATCY 2 cut(s) 176, 547
MlsI TGGCCA 1 cut(s) 655
MluCI AATT 7 cut(s) 14, 223, 251, 329, 397, 408, 820
MluNI TGGCCA 1 cut(s) 655
Mly113I GGCGCC 1 cut(s) 5
MlyI GAGTC 3 cut(s) 382, 630, 1286
MmeI TCCRAC 2 cut(s) 303, 1254
MnlI CCTC 9 cut(s) 38, 42, 88, 93, 207, 386, 624, 912, 1294
Mox20I TGGCCA 1 cut(s) 655
MscI TGGCCA 1 cut(s) 655
MseI TTAA 5 cut(s) 59, 363, 680, 1074, 1305
MslI CAYNNNNRTG 2 cut(s) 95, 756
Msp20I TGGCCA 1 cut(s) 655
MspA1I CMGCKG 1 cut(s) 1045
MspCI CTTAAG 1 cut(s) 1304
MspR9I CCNGG 2 cut(s) 567, 917
MunI CAATTG 1 cut(s) 408
MvaI CCWGG 2 cut(s) 567, 917
MvnI CGCG 2 cut(s) 315, 1242
MwoI GCNNNNNNNGC 4 cut(s) 246, 652, 986, 1092
NarI GGCGCC 1 cut(s) 5
NcoI CCATGG 1 cut(s) 656
NdeII GATC 4 cut(s) 176, 297, 547, 808
NlaIII CATG 6 cut(s) 94, 340, 557, 660, 1006, 1069
NlaIV GGNNCC 2 cut(s) 6, 549
NmeAIII GCCGAG 2 cut(s) 17, 242
NspI RCATGY 1 cut(s) 557
PaeR7I CTCGAG 1 cut(s) 390
PagI TCATGA 1 cut(s) 1002
PceI AGGCCT 1 cut(s) 1086
PciI ACATGT 1 cut(s) 553
PfeI GAWTC 3 cut(s) 504, 595, 608
Pfl23II CGTACG 1 cut(s) 1218
PflFI GACNNNGTC 1 cut(s) 567
PkrI GCNGC 7 cut(s) 139, 268, 472, 718, 962, 1044, 1210
PleI GAGTC 3 cut(s) 382, 630, 1286
PluTI GGCGCC 1 cut(s) 8
PpsI GAGTC 3 cut(s) 382, 630, 1286
Ppu21I YACGTR 1 cut(s) 1218
PscI ACATGT 1 cut(s) 553
PsiI TTATAA 1 cut(s) 293
Psp6I CCWGG 2 cut(s) 565, 915
PspGI CCWGG 2 cut(s) 565, 915
PspLI CGTACG 1 cut(s) 1218
PspN4I GGNNCC 2 cut(s) 6, 549
PspXI VCTCGAGB 1 cut(s) 390
PstI CTGCAG 1 cut(s) 271
PsuI RGATCY 2 cut(s) 176, 547
PsyI GACNNNGTC 1 cut(s) 567
RsaI GTAC 6 cut(s) 68, 104, 805, 857, 969, 1220
RsaNI GTAC 6 cut(s) 67, 103, 804, 856, 968, 1219
RseI CAYNNNNRTG 2 cut(s) 95, 756
SaqAI TTAA 5 cut(s) 59, 363, 680, 1074, 1305
SatI GCNGC 7 cut(s) 138, 267, 471, 717, 961, 1043, 1209
Sau3AI GATC 4 cut(s) 176, 297, 547, 808
SchI GAGTC 3 cut(s) 382, 630, 1286
ScrFI CCNGG 2 cut(s) 567, 917
SexAI ACCWGGT 1 cut(s) 565
SfaNI GCATC 3 cut(s) 73, 1104, 1203
SfcI CTRYAG 1 cut(s) 267
SfoI GGCGCC 1 cut(s) 6
Sfr274I CTCGAG 1 cut(s) 390
SlaI CTCGAG 1 cut(s) 390
SmiMI CAYNNNNRTG 2 cut(s) 95, 756
SmlI CTYRAG 4 cut(s) 390, 1148, 1257, 1304
SmoI CTYRAG 4 cut(s) 390, 1148, 1257, 1304
Sse9I AATT 7 cut(s) 14, 223, 251, 329, 397, 408, 820
SseBI AGGCCT 1 cut(s) 1086
SsiI CCGC 6 cut(s) 41, 315, 716, 1043, 1113, 1240
SspDI GGCGCC 1 cut(s) 4
SspI AATATT 1 cut(s) 590
SspMI CTAG 1 cut(s) 579
StuI AGGCCT 1 cut(s) 1086
StyD4I CCNGG 2 cut(s) 565, 915
StyI CCWWGG 3 cut(s) 656, 812, 1287
TaaI ACNGT 4 cut(s) 786, 863, 976, 1272
TaiI ACGT 4 cut(s) 114, 460, 1220, 1224
TaqI TCGA 5 cut(s) 114, 391, 562, 872, 1295
TasI AATT 7 cut(s) 14, 223, 251, 329, 397, 408, 820
TatI WGTACW 1 cut(s) 967
TauI GCSGC 2 cut(s) 719, 1045
TfiI GAWTC 3 cut(s) 504, 595, 608
Tru1I TTAA 5 cut(s) 59, 363, 680, 1074, 1305
Tru9I TTAA 5 cut(s) 59, 363, 680, 1074, 1305
TscAI CASTG 3 cut(s) 742, 789, 981
TseI GCWGC 5 cut(s) 137, 266, 470, 960, 1208
TspDTI ATGAA 5 cut(s) 244, 464, 792, 1082, 1112
TspGWI ACGGA 4 cut(s) 8, 84, 357, 468
TspRI CASTG 3 cut(s) 742, 789, 981
Tth111I GACNNNGTC 1 cut(s) 567
Vha464I CTTAAG 1 cut(s) 1304
XapI RAATTY 1 cut(s) 251
XceI RCATGY 1 cut(s) 557
XhoI CTCGAG 1 cut(s) 390
XspI CTAG 1 cut(s) 579
ZraI GACGTC 1 cut(s) 112
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.